prot_F-serratus_M_contig131.2335.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig131.2335.1
Unique Nameprot_F-serratus_M_contig131.2335.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length590
Homology
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BLAST of mRNA_F-serratus_M_contig131.2335.1 vs. uniprot
Match: D8LME0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME0_ECTSI)

HSP 1 Score: 577 bits (1486), Expect = 9.410e-198
Identity = 285/452 (63.05%), Postives = 350/452 (77.43%), Query Frame = 0 
Query:    1 GYVVDST-VALDNPFDDAAYNPASSIAVLPDGSGIYVGGERGGLVFLSKTQGDGSLTLANAWSTSKFVKALQSVEQIIVSPDGTKLVTLGAKGPDLGTFGLFSIASDGALDLLQESSHRGIVRAGFPPTSSRDLYVIDDDRNALTHYEYTYDDGRFVDSQTLGGFSCMYGLGIAPNGLNVYVTDDCLHVVTNFKRDTGTGSLVFQDELEGSPLNGDGLGCIKSLSFAASSVWAVGLDSCDDVLSIISRDPDTGTLTPTSKVKPRNPNGNNINMDKTWNLLVVSDGSGDIYVADWADQYILWVRADFGVGGDGSVLGTAWYPVDFMPSTLAISPNLDHIYASNKENAVWRGGVLSREATPSAEPHLLSEGSSGGTTVLAVVLSLSVLGAVVVVGVVAKYIAQKRTIAKYSDEEETLRGMLKTNPNNVVAHNNLGVLMETVHKDYKEAEFHYNE 451
            GY V+ T  +L+NPFDD ++NPAS+I V  DG+G+YVGGE GGL+ L+++  DGSLT+  AW+ S F +ALQSVEQI+V+PDG+KL+TLG++G   GTFG+FSI++DG L LLQE  HRGI+RAGFP +SSRDLY IDDDR+ LTHY  TYD  RFV SQT+GGF+C+YGLG+AP+G NVYV DDCL+ VTNF+RD  TGSL FQDEL G P NGDGLGC+KSLSF     W VGLDSCDDV+SI+ RD DTGTLTPT+ +   NP+GN IN+DKTW+ LVVSDG GDIYVADW+D  ILWVRADFGVGGDGSV+ T W+ + F PSTL  SP+L  +Y +NKEN VW GG   R A P+  P     G+S     LAV LS+S++ A+V+ GV AK+I +KR I+ Y+ EEETLR  L+ NPN+ VAHNNLG LMETV+KD+ EAE HY+E
Sbjct:   43 GYSVNLTGSSLNNPFDDTSFNPASAIGVSADGTGVYVGGELGGLIHLARSPEDGSLTMTRAWAASDFDEALQSVEQIVVTPDGSKLITLGSRGLGRGTFGVFSISADGDLQLLQEDDHRGIIRAGFPDSSSRDLYAIDDDRSVLTHY--TYDGSRFVVSQTVGGFTCLYGLGVAPDGANVYVADDCLYTVTNFRRDPDTGSLTFQDELSGDPRNGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLTPTTLINTDNPDGNTINIDKTWSALVVSDGLGDIYVADWSDSKILWVRADFGVGGDGSVISTNWFSLSFKPSTLIASPDLQTVYVANKENDVWEGGAYPRVAVPT--PDSDGSGTSAVNVTLAVALSVSLVAAIVIAGVAAKFIQRKRNISMYAGEEETLRAALEANPNDAVAHNNLGYLMETVYKDFAEAEAHYSE 490
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BLAST of mRNA_F-serratus_M_contig131.2335.1 vs. uniprot
Match: A0A835ZFA9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFA9_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.110e-37
Identity = 136/460 (29.57%), Postives = 206/460 (44.78%), Query Frame = 0 
Query:   12 NPFDDAAYNPASSIAVLPDGSGIYVGGERGGLVFLSKTQGDGSLTLANAWSTSKFVKALQSVEQIIVSPDGTKLVTLGAKGPDLGTFGLFSIASDGALDLLQESSHRGIVRAGFPPTSSRDLYVIDDDRNALTHYEYTYDDGRFVDSQTLG--GFSCMYGLGIAPNGLNVYVTDDCLHVVTNFKRDTGTGSLVFQDE---LEGSP--LNGDGLGCIKSLSFAASSVWAVGLDSCDDVLSIISRDPDTGTLTPTSKVKPRNPNGNNINMDKTWNLLVVSDGSGDIYVADWADQYILWVRADFGVGGDGSVLGTAWYPVDFMPSTLAISPNLDHIYASNKENAV----------WRGGVLSREATPSAEPHLLSEGSSGGTTVLAVVLSLSVLGAVVVVGVVAK-----YIAQKRTIAKYSDEEETLRGMLKTNPNNVVAHNNLGVLMETVHKDYKEAEFHY 449
            NPF     + AS+IAV  DG  +YVGG++GGL +L++    G L     W  S F  AL++V+ + +S D   +V  G K    G+ G+FS+  DG   LL +     I  A F P S+ D Y ID     L  + Y+  D  F   Q +   G S    L I+P+GLNVYV D       NF RD  TG LV +     L+G P  +  DG+G   S++F++S+ +A  L++    ++++SR    G L   SK      +G  +       LL+ SD   D+YV   +   I W++ D       ++    W+     P  L      +H+YA+                W+G   +RE      P   +   +  TT        SV    +++G  A       IA  +++     EEE     L+ +PN+ +AHNN G  ++    +Y  AE HY
Sbjct:   47 NPFFSKT-SAASAIAVSRDGRNVYVGGDKGGLAWLTRDVATGDLRYQQGWPASAFTTALKAVQHVSISEDDGYMVICGNKADPYGSLGIFSLDVDGTPSLLYQEEIPDIQHALFAPGSATDFYTIDQTNMELRLWSYSSADHGFSVQQAIALEGPS-PDALAISPDGLNVYVHDSSSAKNFNFARDPATG-LVGESPASTLQGDPNAVGSDGIGHWSSMAFSSSAPFAFALETLVGQVTVLSRAVGNGALAVLSKFPVAYDDGAAVACRADAPLLLASDDDVDLYVLGESRGQIGWLQFD---AATHALHANGWFVTGSRPRQLIADAAYEHVYATFAATNTXXXXXXXXXKWKGAHFNREPAVPPTPAPTTPQPTSATT-------YSVESQTLLLGESADTFNLMLIAVHKSVELAQAEEEKFILALQASPNDALAHNNYGHFLQHKRSNYAGAERHY 493
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig131.2335.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LME0_ECTSI9.410e-19863.05TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZFA9_9STRA1.110e-3729.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 495..527
e-value: 31.0
score: 9.4
coord: 460..492
e-value: 16.0
score: 11.8
coord: 530..562
e-value: 17.0
score: 11.7
coord: 425..457
e-value: 25.0
score: 10.2
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 460..494
e-value: 36.0
score: 10.0
coord: 530..564
e-value: 3.0
score: 16.8
coord: 425..459
e-value: 13.0
score: 14.0
coord: 495..529
e-value: 0.64
score: 19.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 404..473
e-value: 7.4E-11
score: 44.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 474..588
e-value: 1.7E-22
score: 81.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 422..575
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 12..282
e-value: 2.3E-8
score: 35.5
NoneNo IPR availablePFAMPF13432TPR_16coord: 439..489
e-value: 0.017
score: 15.8
coord: 508..564
e-value: 6.7E-6
score: 26.7
NoneNo IPR availablePANTHERPTHR44216FAMILY NOT NAMEDcoord: 497..567
coord: 386..525
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 400..590
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..374
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 375..399
NoneNo IPR availableSUPERFAMILY63829Calcium-dependent phosphotriesterasecoord: 21..346
NoneNo IPR availableTMHMMTMhelixcoord: 373..395
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 406..564
score: 26.406

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig131contigF-serratus_M_contig131:738590..757029 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig131.2335.1mRNA_F-serratus_M_contig131.2335.1Fucus serratus malemRNAF-serratus_M_contig131 738590..757030 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig131.2335.1 ID=prot_F-serratus_M_contig131.2335.1|Name=mRNA_F-serratus_M_contig131.2335.1|organism=Fucus serratus male|type=polypeptide|length=590bp
GYVVDSTVALDNPFDDAAYNPASSIAVLPDGSGIYVGGERGGLVFLSKTQ
GDGSLTLANAWSTSKFVKALQSVEQIIVSPDGTKLVTLGAKGPDLGTFGL
FSIASDGALDLLQESSHRGIVRAGFPPTSSRDLYVIDDDRNALTHYEYTY
DDGRFVDSQTLGGFSCMYGLGIAPNGLNVYVTDDCLHVVTNFKRDTGTGS
LVFQDELEGSPLNGDGLGCIKSLSFAASSVWAVGLDSCDDVLSIISRDPD
TGTLTPTSKVKPRNPNGNNINMDKTWNLLVVSDGSGDIYVADWADQYILW
VRADFGVGGDGSVLGTAWYPVDFMPSTLAISPNLDHIYASNKENAVWRGG
VLSREATPSAEPHLLSEGSSGGTTVLAVVLSLSVLGAVVVVGVVAKYIAQ
KRTIAKYSDEEETLRGMLKTNPNNVVAHNNLGVLMETVHKDYKEAEFHYN
EALRINPRAAFAHTSLGHLLHHRHKDFEAAEEHYRKAISLQWRSPNAHYN
IGCLLQHQQNDLVEAERHYRYAIKCDPTHGMAQYNLGWVLEKVKNDLPGA
EKCYRAAIEADPKDKDARRRLAKVLGDQNEEEVDNSQEGK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR013026TPR-contain_dom