mRNA_F-serratus_M_contig131.2319.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig131.2319.1
Unique NamemRNA_F-serratus_M_contig131.2319.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig131.2319.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.930e-15
Identity = 48/129 (37.21%), Postives = 67/129 (51.94%), Query Frame = 2 
Query:   32 CAFRLIRDDVVVMIVCLF-------------DEFQTT-REGL--------SWYLGCAFERDKE-AFFAHRIRAYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 349
            C FR I D  VV I+ ++             +E  T+ R+ L        +WY GCA ERD E        +AYI  +   +G+   ++ PA  +ADLGP+R+DEP  DKPVR  +G L+W +  TRPD
Sbjct: 1468 CVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFTRPD 1596
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BLAST of mRNA_F-serratus_M_contig131.2319.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.340e-14
Identity = 47/129 (36.43%), Postives = 67/129 (51.94%), Query Frame = 2 
Query:   32 CAFRLIRDDVVVMIVCLF-------------DEFQTT-REGL--------SWYLGCAFERDKE-AFFAHRIRAYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 349
            C FR I D  VV I+ ++             +E  T+ R+ L        +WY GCA ERD E        +AYI  +   +G+   ++ PA  +A+LGP+R+DEP  DKPVR  +G L+W +  TRPD
Sbjct:  915 CVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPD 1043
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BLAST of mRNA_F-serratus_M_contig131.2319.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.800e-13
Identity = 48/129 (37.21%), Postives = 66/129 (51.16%), Query Frame = 2 
Query:   32 CAFRLIRD-DVVVMIVCLFDEF-----QTTREGL----------------SWYLGCAFERDKEAFFAHRIR-AYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 349
            C FR + D +VV +IV   D+      +  RE L                +WY GCA   D E       + AYIES+   + V  ++ +PA+  ADLGP+R+DEP  DKPVR  +G L+W   +TRPD
Sbjct:  112 CVFRKVVDGEVVGLIVIYVDDILVAADEGDREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYIESMLKRFDVTTIAFIPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPD 239
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BLAST of mRNA_F-serratus_M_contig131.2319.1 vs. uniprot
Match: A0A6H5JFZ2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFZ2_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.840e-13
Identity = 46/129 (35.66%), Postives = 62/129 (48.06%), Query Frame = 2 
Query:   32 CAFRLIRD-DVVVMIVCLFDEFQTTREG---------------------LSWYLGCAFERDKEAFFAHRIR-AYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 349
            C FR + D +VV +IV   D+     +G                      +WY GCA   D E       + AYIES+   + V   +  PA+  ADLGP+R+DEP  DKPVR  +G L+W   +TRPD
Sbjct:  414 CVFRKVVDGEVVGLIVIYVDDILVAADGGERGELLASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPD 541
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BLAST of mRNA_F-serratus_M_contig131.2319.1 vs. uniprot
Match: A0A6H5JE75_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE75_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 4.660e-13
Identity = 48/129 (37.21%), Postives = 64/129 (49.61%), Query Frame = 2 
Query:   32 CAFRLIRD-DVVVMIVCLFDEF-----QTTREGL----------------SWYLGCAFERDKEAFFAHRIR-AYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 349
            C FR + D +VV +IV   D+      +  RE L                +WY GCA   D E       + AYIES+   + V   +  PA+  ADLGP+R+DEP  DKPVR  +G L+W   +TRPD
Sbjct:   43 CVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPD 170
[Close]
BLAST of mRNA_F-serratus_M_contig131.2319.1 vs. uniprot
Match: A0A6H5JXE8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 5.100e-13
Identity = 50/131 (38.17%), Postives = 66/131 (50.38%), Query Frame = 2 
Query:   32 CAFRLIRD-DVVVMIVCLFDEF-----QTTREGL----------------SWYLGCAFERDKE---AFFAHRIRAYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 349
            C FR + D +VV +IV   D+      +  RE L                +WY GCA   D E   A  +H   AYIES+   + V   +  PA+  ADLGP+R+DEP  DKPVR  +G L+W   +TRPD
Sbjct:  195 CVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKVPVKDLGECTWYDGCATAMDVENGIAKLSHT--AYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAADKPVREAIGCLMWTK-LTRPD 322
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BLAST of mRNA_F-serratus_M_contig131.2319.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 5.290e-13
Identity = 49/129 (37.98%), Postives = 64/129 (49.61%), Query Frame = 2 
Query:   32 CAFRLIRD-DVVVMIVCLFDEF-----QTTREGL----------------SWYLGCAFERDKEAFFAHRIR-AYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 349
            C FR + D +VV +IV   DE      +  RE L                +W+ GCA   D E       + AYIES+   + V   +  PA+  ADLGP+R+DEP  DKPVR  +G LIW   +TRPD
Sbjct:  462 CVFRKVVDGEVVGLIVIYVDEILVAADEGEREELFASLNKKFPVKYMGECTWFDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLIWTK-LTRPD 589
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BLAST of mRNA_F-serratus_M_contig131.2319.1 vs. uniprot
Match: A0A6H5L6D0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D0_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.370e-13
Identity = 48/139 (34.53%), Postives = 67/139 (48.20%), Query Frame = 2 
Query:    2 IHSG*FGLQCCAFRLIRD-DVVVMIVCLFDEF-----QTTREGL----------------SWYLGCAFERDKEAFFAHRIR-AYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 349
            I +G   +  C  R + D +VV +IV   D+      +  RE L                +WY GCA   D E       + AYIES+   + V   +  PA+  A++GPRR+DEP  DKPVR  +G L+W   +TRPD
Sbjct:   31 IENGYEQVDPCVLRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAAADAEIGPRRDDEPAVDKPVREAIGCLMWAK-LTRPD 168
[Close]
BLAST of mRNA_F-serratus_M_contig131.2319.1 vs. uniprot
Match: A0A6H5JUE2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 7.060e-13
Identity = 42/107 (39.25%), Postives = 56/107 (52.34%), Query Frame = 2 
Query:   32 CAFRLIRDDVVVMIVCLFDEFQTTREGLSWYLGCAFERDKEAFFAHRIR-AYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 349
            C FR + D  V   +      +   E  +WY GCA   D E       + AYIES+   + V   +  PA+  ADLGP+R+DEP  DKPVR  +G L+W   +TRPD
Sbjct:  195 CVFRKVVDGEVFAFLNKKSPVKDLGE-CTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPD 299
[Close]
BLAST of mRNA_F-serratus_M_contig131.2319.1 vs. uniprot
Match: A0A6H5K2N9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N9_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 9.140e-13
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 2 
Query:  110 GLSWYLGCAFERDKEAFFAHRIR-AYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 349
            G +WY GCA   D E       + AYIES+   + V   +  PA+ +ADLGP+R+DEP  DKPV+  +G L+W   +TRPD
Sbjct:  334 GCTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATNADLGPKRDDEPAVDKPVKEAIGCLMWTK-LTRPD 413
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig131.2319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L175_9PHAE3.930e-1537.21Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKS3_9PHAE1.340e-1436.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXU1_9PHAE1.800e-1337.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFZ2_9PHAE2.840e-1335.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JE75_9PHAE4.660e-1337.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXE8_9PHAE5.100e-1338.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK49_9PHAE5.290e-1337.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6D0_9PHAE5.370e-1334.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUE2_9PHAE7.060e-1339.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2N9_9PHAE9.140e-1344.44Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig131contigF-serratus_M_contig131:155417..155765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size349
Cds size282
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929270.3702526-UTR-F-serratus_M_contig131:155416..1554831622929270.3702526-UTR-F-serratus_M_contig131:155416..155483Fucus serratus maleUTRF-serratus_M_contig131 155417..155483 +
1690962777.6835694-UTR-F-serratus_M_contig131:155416..1554831690962777.6835694-UTR-F-serratus_M_contig131:155416..155483Fucus serratus maleUTRF-serratus_M_contig131 155417..155483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929270.3824055-CDS-F-serratus_M_contig131:155483..1557651622929270.3824055-CDS-F-serratus_M_contig131:155483..155765Fucus serratus maleCDSF-serratus_M_contig131 155484..155765 +
1690962777.6916697-CDS-F-serratus_M_contig131:155483..1557651690962777.6916697-CDS-F-serratus_M_contig131:155483..155765Fucus serratus maleCDSF-serratus_M_contig131 155484..155765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig131.2319.1prot_F-serratus_M_contig131.2319.1Fucus serratus malepolypeptideF-serratus_M_contig131 155484..155765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig131.2319.1

>prot_F-serratus_M_contig131.2319.1 ID=prot_F-serratus_M_contig131.2319.1|Name=mRNA_F-serratus_M_contig131.2319.1|organism=Fucus serratus male|type=polypeptide|length=94bp
MIVCLFDEFQTTREGLSWYLGCAFERDKEAFFAHRIRAYIESVASHYGVD
AVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD
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mRNA from alignment at F-serratus_M_contig131:155417..155765+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig131.2319.1 ID=mRNA_F-serratus_M_contig131.2319.1|Name=mRNA_F-serratus_M_contig131.2319.1|organism=Fucus serratus male|type=mRNA|length=349bp|location=Sequence derived from alignment at F-serratus_M_contig131:155417..155765+ (Fucus serratus male)
CATTCATTCAGGCTGATTTGGACTTCAATGTTGTGCTTTCCGGCTGATTA
GGGATGATGTAGTAGTTATGATTGTTTGTCTTTTTGACGAGTTCCAGACT
ACGAGAGAAGGACTCTCGTGGTACCTAGGGTGCGCGTTTGAGCGTGATAA
GGAGGCGTTCTTCGCGCATCGCATAAGAGCGTATATCGAGTCTGTTGCCA
GCCACTATGGAGTTGACGCAGTGTCTAATCTCCCGGCTTCTCAATCGGCA
GATCTCGGCCCTAGGAGGAACGACGAGCCGGTCTGTGATAAACCTGTTCG
GGCGACTGTTGGTAGTTTGATTTGGTTGAGTGGTATGACGCGGCCAGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig131:155417..155765+

>mRNA_F-serratus_M_contig131.2319.1 ID=mRNA_F-serratus_M_contig131.2319.1|Name=mRNA_F-serratus_M_contig131.2319.1|organism=Fucus serratus male|type=CDS|length=564bp|location=Sequence derived from alignment at F-serratus_M_contig131:155417..155765+ (Fucus serratus male)
ATGATTGTTTGTCTTTTTGACGAGTTCCAGACTACGAGAGAAGGACTCTC
GTGGTACCTAGGGTGCGCGTTTGAGCGTGATAAGGAGGCGTTCTTCGCGC
ATCGCATAAGAGCGTATATCGAGTCTGTTGCCAGCCACTATGGAGTTGAC
GCAGTGTCTAATCTCCCGGCTTCTCAATCGGCAGATCTCGGCCCTAGGAG
GAACGACGAGCCGGTCTGTGATAAACCTGTTCGGGCGACTGTTGGTAGTT
TGATTTGGTTGAGTGGTATGACGCGGCCAGACATGATTGTTTGTCTTTTT
GACGAGTTCCAGACTACGAGAGAAGGACTCTCGTGGTACCTAGGGTGCGC
GTTTGAGCGTGATAAGGAGGCGTTCTTCGCGCATCGCATAAGAGCGTATA
TCGAGTCTGTTGCCAGCCACTATGGAGTTGACGCAGTGTCTAATCTCCCG
GCTTCTCAATCGGCAGATCTCGGCCCTAGGAGGAACGACGAGCCGGTCTG
TGATAAACCTGTTCGGGCGACTGTTGGTAGTTTGATTTGGTTGAGTGGTA
TGACGCGGCCAGAC
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