mRNA_F-serratus_M_contig131.2328.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig131.2328.1
Unique NamemRNA_F-serratus_M_contig131.2328.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig131.2328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig131contigF-serratus_M_contig131:653913..654433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size521
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig131.2328.1prot_F-serratus_M_contig131.2328.1Fucus serratus malepolypeptideF-serratus_M_contig131 653980..654333 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929268.2592714-UTR-F-serratus_M_contig131:653912..6539791622929268.2592714-UTR-F-serratus_M_contig131:653912..653979Fucus serratus maleUTRF-serratus_M_contig131 653913..653979 +
1690962776.676638-UTR-F-serratus_M_contig131:653912..6539791690962776.676638-UTR-F-serratus_M_contig131:653912..653979Fucus serratus maleUTRF-serratus_M_contig131 653913..653979 +
1622929268.294705-UTR-F-serratus_M_contig131:654333..6544331622929268.294705-UTR-F-serratus_M_contig131:654333..654433Fucus serratus maleUTRF-serratus_M_contig131 654334..654433 +
1690962776.6961153-UTR-F-serratus_M_contig131:654333..6544331690962776.6961153-UTR-F-serratus_M_contig131:654333..654433Fucus serratus maleUTRF-serratus_M_contig131 654334..654433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929268.2791212-CDS-F-serratus_M_contig131:653979..6543331622929268.2791212-CDS-F-serratus_M_contig131:653979..654333Fucus serratus maleCDSF-serratus_M_contig131 653980..654333 +
1690962776.6860948-CDS-F-serratus_M_contig131:653979..6543331690962776.6860948-CDS-F-serratus_M_contig131:653979..654333Fucus serratus maleCDSF-serratus_M_contig131 653980..654333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig131.2328.1

>prot_F-serratus_M_contig131.2328.1 ID=prot_F-serratus_M_contig131.2328.1|Name=mRNA_F-serratus_M_contig131.2328.1|organism=Fucus serratus male|type=polypeptide|length=118bp
MPREKCTWIGGQFVYIVGGAHALNGCVASGAMGTELKSRFLWYRRTLFAV
CQAGVFVVVFTGLVAAATASDQTTHGCETINLIRCSFGLYNSCFFRTSTH
FCFVNNFVFLFCFFCGS*
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mRNA from alignment at F-serratus_M_contig131:653913..654433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig131.2328.1 ID=mRNA_F-serratus_M_contig131.2328.1|Name=mRNA_F-serratus_M_contig131.2328.1|organism=Fucus serratus male|type=mRNA|length=521bp|location=Sequence derived from alignment at F-serratus_M_contig131:653913..654433+ (Fucus serratus male)
CAAGCCACACCCCATACTACAGCTCCTCGGCCGTGGTTGGGTTTCGCTCA
CGACGGTAGGCGTTTTTATGCCACGAGAAAAGTGTACTTGGATTGGAGGC
CAGTTTGTTTATATAGTTGGAGGAGCCCACGCGTTAAACGGGTGTGTTGC
GAGTGGGGCAATGGGTACAGAGCTCAAATCTCGTTTCTTGTGGTATCGTC
GTACGTTGTTTGCTGTGTGCCAAGCGGGAGTTTTCGTTGTTGTTTTCACT
GGGCTGGTTGCGGCCGCGACCGCGAGCGACCAGACCACCCACGGGTGTGA
AACCATTAATCTAATACGTTGCTCGTTTGGACTCTATAATAGCTGTTTTT
TTCGTACTTCAACACATTTCTGTTTTGTAAATAATTTTGTCTTTTTGTTT
TGTTTTTTTTGTGGCTCTTGAAATTTTTCAAGGCGCGCTCGCTTTATTTC
CCCAGCAGATCAAACAAAATCGGGCGTTGGGGTACGTTCGGCGCTAGGGC
CTATATCCGGGTCCTTGTCAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig131:653913..654433+

>mRNA_F-serratus_M_contig131.2328.1 ID=mRNA_F-serratus_M_contig131.2328.1|Name=mRNA_F-serratus_M_contig131.2328.1|organism=Fucus serratus male|type=CDS|length=708bp|location=Sequence derived from alignment at F-serratus_M_contig131:653913..654433+ (Fucus serratus male)
ATGCCACGAGAAAAGTGTACTTGGATTGGAGGCCAGTTTGTTTATATAGT
TGGAGGAGCCCACGCGTTAAACGGGTGTGTTGCGAGTGGGGCAATGGGTA
CAGAGCTCAAATCTCGTTTCTTGTGGTATCGTCGTACGTTGTTTGCTGTG
TGCCAAGCGGGAGTTTTCGTTGTTGTTTTCACTGGGCTGGTTGCGGCCGC
GACCGCGAGCGACCAGACCACCCACGGGTGTGAAACCATTAATCTAATAC
GTTGCTCGTTTGGACTCTATAATAGCTGTTTTTTTCGTACTTCAACACAT
TTCTGTTTTGTAAATAATTTTGTCTTTTTGTTTTGTTTTTTTTGTGGCTC
TTGAATGCCACGAGAAAAGTGTACTTGGATTGGAGGCCAGTTTGTTTATA
TAGTTGGAGGAGCCCACGCGTTAAACGGGTGTGTTGCGAGTGGGGCAATG
GGTACAGAGCTCAAATCTCGTTTCTTGTGGTATCGTCGTACGTTGTTTGC
TGTGTGCCAAGCGGGAGTTTTCGTTGTTGTTTTCACTGGGCTGGTTGCGG
CCGCGACCGCGAGCGACCAGACCACCCACGGGTGTGAAACCATTAATCTA
ATACGTTGCTCGTTTGGACTCTATAATAGCTGTTTTTTTCGTACTTCAAC
ACATTTCTGTTTTGTAAATAATTTTGTCTTTTTGTTTTGTTTTTTTTGTG
GCTCTTGA
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