mRNA_F-serratus_M_contig131.2334.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig131.2334.1
Unique NamemRNA_F-serratus_M_contig131.2334.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig131.2334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig131contigF-serratus_M_contig131:710696..713293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1413
Cds size1413
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig131.2334.1prot_F-serratus_M_contig131.2334.1Fucus serratus malepolypeptideF-serratus_M_contig131 710696..713293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929268.1376326-CDS-F-serratus_M_contig131:710695..7112471622929268.1376326-CDS-F-serratus_M_contig131:710695..711247Fucus serratus maleCDSF-serratus_M_contig131 710696..711247 +
1690962776.6378794-CDS-F-serratus_M_contig131:710695..7112471690962776.6378794-CDS-F-serratus_M_contig131:710695..711247Fucus serratus maleCDSF-serratus_M_contig131 710696..711247 +
1622929268.1553257-CDS-F-serratus_M_contig131:711355..7121201622929268.1553257-CDS-F-serratus_M_contig131:711355..712120Fucus serratus maleCDSF-serratus_M_contig131 711356..712120 +
1690962776.6483493-CDS-F-serratus_M_contig131:711355..7121201690962776.6483493-CDS-F-serratus_M_contig131:711355..712120Fucus serratus maleCDSF-serratus_M_contig131 711356..712120 +
1622929268.170455-CDS-F-serratus_M_contig131:713197..7132931622929268.170455-CDS-F-serratus_M_contig131:713197..713293Fucus serratus maleCDSF-serratus_M_contig131 713198..713293 +
1690962776.6574955-CDS-F-serratus_M_contig131:713197..7132931690962776.6574955-CDS-F-serratus_M_contig131:713197..713293Fucus serratus maleCDSF-serratus_M_contig131 713198..713293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig131.2334.1

>prot_F-serratus_M_contig131.2334.1 ID=prot_F-serratus_M_contig131.2334.1|Name=mRNA_F-serratus_M_contig131.2334.1|organism=Fucus serratus male|type=polypeptide|length=471bp
AASSNNAREINLLLKARARPDATDRDGSTPLHWAARSGHLSAVQALLAGG
APVNAASSTGVTALHEASLKNKVEVMYLLLQAGANVDALNTDGRTPIHEA
ARFGNLPAMLALASAGASVDAAGSTGVTPLHEAVVENKVRAIGLLSKVGA
NVDVLEGSGCTPLHWAADSGHLSAVQALLAAGATSVDVLDREGRTPLHVA
ALTGHLSVVQTLLAAGADASRRYGRRDDAAITWAAYNGHVGMLNTLVQHG
VDVNGSGQTGVSALHQAVGGNRVGAMELLLKAGANVNASDREGRTPLHWA
ARLGHISAVQTVLAAGASVNAVGSTGVTALHEAARANQVGVIDLLSKAGA
NVNSLEATGCTPLHWAADSGHLSAVQALLTAGAAVNAAGETGITALHVAA
CKNQVGAINLLLKAGNGVDILDSEGRTPLHLAAMTGNVFRVRELLANAPA
DRAWHRRRLLVLCRARLERVR
back to top

mRNA from alignment at F-serratus_M_contig131:710696..713293+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig131.2334.1 ID=mRNA_F-serratus_M_contig131.2334.1|Name=mRNA_F-serratus_M_contig131.2334.1|organism=Fucus serratus male|type=mRNA|length=2598bp|location=Sequence derived from alignment at F-serratus_M_contig131:710696..713293+ (Fucus serratus male)
GCAGCTAGCAGTAACAACGCGCGGGAGATCAATTTGCTGCTGAAGGCACG
GGCCAGGCCGGACGCCACGGACAGAGATGGGAGCACGCCGCTACACTGGG
CAGCCCGTTCTGGCCATCTTTCTGCCGTCCAAGCTCTGCTCGCTGGTGGT
GCACCCGTAAACGCCGCAAGCTCCACGGGCGTAACAGCCCTGCATGAGGC
CTCTCTCAAAAACAAAGTCGAGGTGATGTATCTACTGCTGCAGGCTGGAG
CGAACGTGGATGCTTTGAACACCGACGGCAGGACTCCGATTCATGAAGCC
GCCCGCTTTGGGAACCTTCCCGCGATGCTCGCTCTCGCGAGCGCGGGTGC
GTCCGTGGACGCCGCGGGCTCCACGGGAGTTACCCCCTTGCATGAAGCCG
TAGTAGAAAATAAGGTTCGAGCGATCGGCCTGCTTTCGAAGGTGGGAGCA
AACGTTGACGTTCTAGAAGGTTCAGGGTGTACGCCGCTTCATTGGGCAGC
GGACTCCGGACACCTTTCCGCGGTGCAAGCTCTGTTAGCAGCCGGTGCCA
CAGTGAACGCTGCAGGCAAGACCGGGATCACCGCCCTGCACTCGGCGGCC
TACAGGAATCAGGTGGGGGTGGTTTGCTTACTCGTGGAGGAGTTGTCGAA
GGCGGGAGAGAGTGTGGATGTTCTAGATCGCGAGGGTCGCACACCGCTTC
ACGTCGCCGCCTTAACGGGCCACCTATCCGTGGTCCAAACGCTGTTGGCC
GCTGGCGCCGACGCTTCCCGCCGCTACGGCCGCCGAGACGACGCAGCGAT
CACCTGGGCCGCTTACAACGGACACGTTGGCATGCTGAACACCCTGGTAC
AGCACGGGGTGGATGTGAACGGGTCAGGACAGACGGGTGTATCAGCCCTA
CACCAGGCCGTTGGAGGGAACCGGGTGGGGGCGATGGAACTGCTGCTGAA
GGCGGGTGCAAACGTGAACGCTTCGGACCGCGAGGGGCGCACACCGCTCC
ACTGGGCGGCCCGCCTTGGCCACATTTCCGCGGTGCAGACCGTGTTGGCT
GCTGGCGCGTCAGTGAACGCCGTGGGATCGACGGGCGTGACAGCATTGCA
CGAAGCCGCGAGGGCGAACCAGGTTGGAGTGATTGACCTACTTTCGAAGG
CGGGAGCAAACGTGAACTCTCTGGAGGCGACGGGATGTACGCCGCTCCAC
TGGGCAGCGGACTCCGGCCACCTTTCCGCGGTGCAAGCGTTGTTGACCGC
CGGGGCCGCCGTGAACGCTGCAGGTGAGACCGGAATCACCGCCTTACACG
TGGCGGCTTGTAAAAACCAGGTGGGAGCGATTAACCTACTCTTGAAGGCG
GGGAACGGCGTTGACATCTTGGATAGCGAGGGTCGCACCCCGCTCCATCT
GGCGGCGATGACGGGGAATGTTTTCGTGGTGCAAGCTCTACTCGCCGCCG
GCGCCGATGCTTCCCTTCTCTACGGTCTCCGGGACGACGCCGCCATCACT
TGGGCCGCTTACAATGGGCACGTTGACATGCTTATTATCCTGGTTGAGCA
CGGGGCGGAAGTGGACGCCGCGGGGCCCTCGGGTGTAACTGCTCTGCATC
AGGCCGCTAGGAGCAACCGGGTCAGGGCGATGGCCCACCTACTGAAGGCA
GGAGCAAACGTGAATGCTTCGGACCGCGAGGGACGCACGCCACTCCACTG
GGCGGCACGCTTTGGCCACCTTTCCGCGGTGCAGACGTTGCTGGAGGCCG
GCGCGGCAGTAAACGCCGCGGGCTCGACGGGCGCGACGGCCTTGCACGAG
GCCGCTCGAATGAACCAGGTGGAAGCTTTGGTATTGCTGCTGAAGGCGGG
GGGGGAGAGTGTCGATGCCGTGGACAGTGAAGGGCGCACGCCGCTTCACG
TAGCCGCCGAGCAGGGTCACTTCACCGCGGTAACAGCGCTGTTGGCCGCA
GGAGCTGACGTTTCCCTCCGATATGGCCGCTACGAAGATACAGCAATAAC
CGGCGCCGCTTACAATGGGCACGTGGACATGCTGAGCGCCATGATCGAGC
ACGGGACGGATGTGAACACCGCGGGCTCCACGGGTGTCACGGCCCTGCAC
GTGGCGGCGAGCAGGAACCAAGTCGAGGCCATGAAGGTGCTGCTGAGGCG
AGGCGCAAGCGCCGACATCGCGAACAGCGAGGGCTGCACGCCGCTGCACT
GGGCGGCCTACTTCGGCTACCTCTCCGCGGTGCGGGTGCTTCTCGAGGCG
GGGGCGAACGTCCACTCGCGGAACGCCAGGGGGCTGACTCCTTTGCATCG
CGCTGTGTCGGTGGCTGGCAAGGGCAAGGACAAGGGCAAGGACGGCGTGG
CCGACTGTGTCCGCCTCCTGCTTCTATCGGGGGCGGACGAATTCGTGCGG
GGCAGCAAAGGAGAGACCGCGATGGACATAGTCAGGCAAAACCAGACTGG
TGGCGATGGCGACGACGATGAAAGGGGAGAAATCGGGGCAAGCGAAATCG
AGCGCGTGCGCGAACTCTTGGCCAACGCGCCGGCGGACAGGGCATGGCAT
CGTCGGAGGCTGCTGGTCCTCTGCCGTGCTCGTCTCGAGAGGGTGCGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig131:710696..713293+

>mRNA_F-serratus_M_contig131.2334.1 ID=mRNA_F-serratus_M_contig131.2334.1|Name=mRNA_F-serratus_M_contig131.2334.1|organism=Fucus serratus male|type=CDS|length=2826bp|location=Sequence derived from alignment at F-serratus_M_contig131:710696..713293+ (Fucus serratus male)
GCAGCTAGCAGTAACAACGCGCGGGAGATCAATTTGCTGCTGAAGGCACG
GGCCAGGCCGGACGCCACGGACAGAGATGGGAGCACGCCGCTACACTGGG
CAGCCCGTTCTGGCCATCTTTCTGCCGTCCAAGCTCTGCTCGCTGGTGGT
GCACCCGTAAACGCCGCAAGCTCCACGGGCGTAACAGCCCTGCATGAGGC
CTCTCTCAAAAACAAAGTCGAGGTGATGTATCTACTGCTGCAGGCTGGAG
CGAACGTGGATGCTTTGAACACCGACGGCAGGACTCCGATTCATGAAGCC
GCCCGCTTTGGGAACCTTCCCGCGATGCTCGCTCTCGCGAGCGCGGGTGC
GTCCGTGGACGCCGCGGGCTCCACGGGAGTTACCCCCTTGCATGAAGCCG
TAGTAGAAAATAAGGTTCGAGCGATCGGCCTGCTTTCGAAGGTGGGAGCA
AACGTTGACGTTCTAGAAGGTTCAGGGTGTACGCCGCTTCATTGGGCAGC
GGACTCCGGACACCTTTCCGCGGTGCAAGCTCTGTTAGCAGCCGGTGCCA
CAGCAGCTAGCAGTAACAACGCGCGGGAGATCAATTTGCTGCTGAAGGCA
CGGGCCAGGCCGGACGCCACGGACAGAGATGGGAGCACGCCGCTACACTG
GGCAGCCCGTTCTGGCCATCTTTCTGCCGTCCAAGCTCTGCTCGCTGGTG
GTGCACCCGTAAACGCCGCAAGCTCCACGGGCGTAACAGCCCTGCATGAG
GCCTCTCTCAAAAACAAAGTCGAGGTGATGTATCTACTGCTGCAGGCTGG
AGCGAACGTGGATGCTTTGAACACCGACGGCAGGACTCCGATTCATGAAG
CCGCCCGCTTTGGGAACCTTCCCGCGATGCTCGCTCTCGCGAGCGCGGGT
GCGTCCGTGGACGCCGCGGGCTCCACGGGAGTTACCCCCTTGCATGAAGC
CGTAGTAGAAAATAAGGTTCGAGCGATCGGCCTGCTTTCGAAGGTGGGAG
CAAACGTTGACGTTCTAGAAGGTTCAGGGTGTACGCCGCTTCATTGGGCA
GCGGACTCCGGACACCTTTCCGCGGTGCAAGCTCTGTTAGCAGCCGGTGC
CACAAGTGTGGATGTTCTAGATCGCGAGGGTCGCACACCGCTTCACGTCG
CCGCCTTAACGGGCCACCTATCCGTGGTCCAAACGCTGTTGGCCGCTGGC
GCCGACGCTTCCCGCCGCTACGGCCGCCGAGACGACGCAGCGATCACCTG
GGCCGCTTACAACGGACACGTTGGCATGCTGAACACCCTGGTACAGCACG
GGGTGGATGTGAACGGGTCAGGACAGACGGGTGTATCAGCCCTACACCAG
GCCGTTGGAGGGAACCGGGTGGGGGCGATGGAACTGCTGCTGAAGGCGGG
TGCAAACGTGAACGCTTCGGACCGCGAGGGGCGCACACCGCTCCACTGGG
CGGCCCGCCTTGGCCACATTTCCGCGGTGCAGACCGTGTTGGCTGCTGGC
GCGTCAGTGAACGCCGTGGGATCGACGGGCGTGACAGCATTGCACGAAGC
CGCGAGGGCGAACCAGGTTGGAGTGATTGACCTACTTTCGAAGGCGGGAG
CAAACGTGAACTCTCTGGAGGCGACGGGATGTACGCCGCTCCACTGGGCA
GCGGACTCCGGCCACCTTTCCGCGGTGCAAGCGTTGTTGACCGCCGGGGC
CGCCGTGAACGCTGCAGGTGAGACCGGAATCACCGCCTTACACGTGGCGG
CTTGTAAAAACCAGGTGGGAGCGATTAACCTACTCTTGAAGGCGGGGAAC
GGCGTTGACATCTTGGATAGCGAGGGTCGCACCCCGCTCCATCTGGCGGC
GATGACGGGGAATGTTTTCAGTGTGGATGTTCTAGATCGCGAGGGTCGCA
CACCGCTTCACGTCGCCGCCTTAACGGGCCACCTATCCGTGGTCCAAACG
CTGTTGGCCGCTGGCGCCGACGCTTCCCGCCGCTACGGCCGCCGAGACGA
CGCAGCGATCACCTGGGCCGCTTACAACGGACACGTTGGCATGCTGAACA
CCCTGGTACAGCACGGGGTGGATGTGAACGGGTCAGGACAGACGGGTGTA
TCAGCCCTACACCAGGCCGTTGGAGGGAACCGGGTGGGGGCGATGGAACT
GCTGCTGAAGGCGGGTGCAAACGTGAACGCTTCGGACCGCGAGGGGCGCA
CACCGCTCCACTGGGCGGCCCGCCTTGGCCACATTTCCGCGGTGCAGACC
GTGTTGGCTGCTGGCGCGTCAGTGAACGCCGTGGGATCGACGGGCGTGAC
AGCATTGCACGAAGCCGCGAGGGCGAACCAGGTTGGAGTGATTGACCTAC
TTTCGAAGGCGGGAGCAAACGTGAACTCTCTGGAGGCGACGGGATGTACG
CCGCTCCACTGGGCAGCGGACTCCGGCCACCTTTCCGCGGTGCAAGCGTT
GTTGACCGCCGGGGCCGCCGTGAACGCTGCAGGTGAGACCGGAATCACCG
CCTTACACGTGGCGGCTTGTAAAAACCAGGTGGGAGCGATTAACCTACTC
TTGAAGGCGGGGAACGGCGTTGACATCTTGGATAGCGAGGGTCGCACCCC
GCTCCATCTGGCGGCGATGACGGGGAATGTTTTCCGCGTGCGCGAACTCT
TGGCCAACGCGCCGGCGGACAGGGCATGGCATCGTCGGAGGCTGCTGGTC
CTCTGCCGTGCTCGTCTCGAGAGGGTGCGGCGCGTGCGCGAACTCTTGGC
CAACGCGCCGGCGGACAGGGCATGGCATCGTCGGAGGCTGCTGGTCCTCT
GCCGTGCTCGTCTCGAGAGGGTGCGG
back to top