mRNA_F-serratus_M_contig131.2333.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig131.2333.1
Unique NamemRNA_F-serratus_M_contig131.2333.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig131.2333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig131contigF-serratus_M_contig131:678801..682833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size2081
Cds size1170
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig131.2333.1prot_F-serratus_M_contig131.2333.1Fucus serratus malepolypeptideF-serratus_M_contig131 678991..682112 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929268.0147474-UTR-F-serratus_M_contig131:678800..6789901622929268.0147474-UTR-F-serratus_M_contig131:678800..678990Fucus serratus maleUTRF-serratus_M_contig131 678801..678990 +
1690962776.5744128-UTR-F-serratus_M_contig131:678800..6789901690962776.5744128-UTR-F-serratus_M_contig131:678800..678990Fucus serratus maleUTRF-serratus_M_contig131 678801..678990 +
1622929268.0976195-UTR-F-serratus_M_contig131:682112..6828331622929268.0976195-UTR-F-serratus_M_contig131:682112..682833Fucus serratus maleUTRF-serratus_M_contig131 682113..682833 +
1690962776.6281257-UTR-F-serratus_M_contig131:682112..6828331690962776.6281257-UTR-F-serratus_M_contig131:682112..682833Fucus serratus maleUTRF-serratus_M_contig131 682113..682833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929268.0287547-CDS-F-serratus_M_contig131:678990..6794991622929268.0287547-CDS-F-serratus_M_contig131:678990..679499Fucus serratus maleCDSF-serratus_M_contig131 678991..679499 +
1690962776.5869074-CDS-F-serratus_M_contig131:678990..6794991690962776.5869074-CDS-F-serratus_M_contig131:678990..679499Fucus serratus maleCDSF-serratus_M_contig131 678991..679499 +
1622929268.0476058-CDS-F-serratus_M_contig131:679721..6800401622929268.0476058-CDS-F-serratus_M_contig131:679721..680040Fucus serratus maleCDSF-serratus_M_contig131 679722..680040 +
1690962776.6027038-CDS-F-serratus_M_contig131:679721..6800401690962776.6027038-CDS-F-serratus_M_contig131:679721..680040Fucus serratus maleCDSF-serratus_M_contig131 679722..680040 +
1622929268.0676672-CDS-F-serratus_M_contig131:680791..6809111622929268.0676672-CDS-F-serratus_M_contig131:680791..680911Fucus serratus maleCDSF-serratus_M_contig131 680792..680911 +
1690962776.61092-CDS-F-serratus_M_contig131:680791..6809111690962776.61092-CDS-F-serratus_M_contig131:680791..680911Fucus serratus maleCDSF-serratus_M_contig131 680792..680911 +
1622929268.0832129-CDS-F-serratus_M_contig131:681890..6821121622929268.0832129-CDS-F-serratus_M_contig131:681890..682112Fucus serratus maleCDSF-serratus_M_contig131 681891..682112 +
1690962776.6192882-CDS-F-serratus_M_contig131:681890..6821121690962776.6192882-CDS-F-serratus_M_contig131:681890..682112Fucus serratus maleCDSF-serratus_M_contig131 681891..682112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig131.2333.1

>prot_F-serratus_M_contig131.2333.1 ID=prot_F-serratus_M_contig131.2333.1|Name=mRNA_F-serratus_M_contig131.2333.1|organism=Fucus serratus male|type=polypeptide|length=390bp
MLDAYGPQPDGGAPPPKAVTSFRGGGYEGPQPHHQNQNTQQHQQQRRWNS
RERRDGGGQGYPERSTRHDSRHRSSGGSGGHSGSHKRDEEGSRHGRRGRD
DRDGGDRRDRSKGGRGDSRDSYRDKERGRGHDRGREGERRGSREVDRRGG
RGDWSDSRDRNSKRSQSWERHDSRDGDQQRNRHPSPAPRHRGSSKENRDR
ANPSPSKHKAEGDRAHGASDADDGGRERGEASRGRGGDVTATSSVAGKGE
AKQKKKKKEKDRKEKKEKKDKKKGKRDRREDRSASPYPNDSGKRKRGRSV
EDDDYYRDVGAGTSRKANAPVGKPAAGNTKKGDGADRTPERWTPTVDPVD
ALLTTIPASKHKRSRQTSSGGGGATVGASDFYTKRNRPR*
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mRNA from alignment at F-serratus_M_contig131:678801..682833+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig131.2333.1 ID=mRNA_F-serratus_M_contig131.2333.1|Name=mRNA_F-serratus_M_contig131.2333.1|organism=Fucus serratus male|type=mRNA|length=4033bp|location=Sequence derived from alignment at F-serratus_M_contig131:678801..682833+ (Fucus serratus male)
GGTCGACCAGCAGAGGTGGCCCGCCAATCAGCCAGGGGATTTATTCGGCG
GGGAGAGGGATAGGGAAGGGCGGGGTTTCCATCCTGGGAGGCCTGGTGGA
TACCACCGCGGCGGTGGTCGCTTCGGCAGAGGGAGCAGTCGTGGACGCGG
GGGGCAGGATTGGAGCAGACCTAGGAGAGACGGCCCTAGCATGTTGGACG
CGTACGGCCCTCAGCCCGACGGTGGTGCGCCTCCCCCAAAAGCAGTGACG
TCTTTCCGCGGCGGCGGCTATGAGGGACCGCAGCCACACCATCAGAACCA
GAATACTCAACAACACCAGCAACAGCGACGATGGAATTCCAGGGAGCGTC
GCGACGGTGGCGGGCAAGGCTATCCTGAGCGCTCAACTCGTCACGATAGT
CGACACCGCTCTTCCGGTGGTAGCGGCGGGCACAGCGGTTCCCACAAGCG
TGACGAGGAAGGTTCAAGGCATGGCCGACGTGGAAGAGATGACAGAGACG
GCGGAGATCGTAGAGACAGGTCTAAGGGTGGTAGGGGCGATAGTCGAGAC
AGCTACCGGGATAAAGAGAGGGGTCGAGGTCACGATCGGGGTCGGGAGGG
GGAGAGGCGAGGGAGTCGGGAGGTGGACAGGCGCGGAGGTCGGGGTGACT
GGAGCGACAGTCGAGACCGCAATAGCAAGCGGTCTCAGTCGTGGGAAAGG
TGAGGGAATCGCATGTCCCGCCCTTTAATTGAGAATACTTTTCGTCGAGA
GAGCCGTGGTTCACAGATCTGATGGTTGTATGGATGTTTGAGAAGGGGGG
GGATGCACGACGGCTAATATTTTCCTTGTCTGACCGGTCGATTCCGCGCA
CGAGAGCCCGAATTACAGTCGTGCGTCCCTATTACCGGAATATCTCTCGT
GTTCCTGATGTGGAACTCCAGGCACGACTCCCGCGACGGGGACCAGCAAC
GTAATCGCCACCCGTCTCCGGCTCCGAGGCACCGAGGCTCCTCCAAGGAA
AATCGGGATCGAGCGAATCCCTCCCCGAGCAAGCACAAGGCAGAGGGCGA
CCGCGCACACGGCGCCAGCGATGCCGACGATGGTGGGAGGGAGCGAGGCG
AGGCCTCGCGCGGTCGCGGCGGGGACGTTACCGCCACCAGCAGCGTTGCG
GGCAAGGGGGAGGCCAAGCAGAAGAAGAAAAAGAAGGAGAAGGACCGGAA
GGAGAAGAAGGAAAAGAAAGACAAAAAGAAGGGAAAAAGGGTGCGTTTGT
GTATGTGTATATATATGGCCCTCGTCGCCCGAGTGGTCTAGTAGGTAACC
TGCACACCTGCTAGTGCGGAGGTCGTGAATTCAATTCTTGGTTGAATCAG
GATTGTAATTCTTGCTTCCGTAGCGGAAAGCGTGAGTAGGTAAAATTCAA
CCATTGGTTGACGAGTTGTAAGAGTGCTGAACTTGCTTGCGATAAAAAAT
CGTAAGGCGTGAACCGGGGAGAGATGGGAAGATCCTTTGTGACCACAGGC
AGGATGGAATGAGGCCCATCGGCTGTAAGTGAGATGAATATGTTAGATAC
ATACGTATATGTTAAATGTGTGTAAATGTGAGAGTGAGAGAAATTATGAA
ACGGTTCGATGCCGTTGTGTTTGTCTTGTTCTTTTACGCGCTATCCCTTC
TCTTTCCTTGTCGCTTACTTAGATGGAGTGATTGTGTGATTGTCTATTTT
GAGGGAACTCGACCGAAGGTTCCTTGTGTCTCCCCACAGCACAGCCAGGC
GTTTCATTTCCGCGGTACTCTGAATCAAGTTGTGGGTCCCGGGTCGACGC
GCAGGCGACGCCTTTTTGTATTTTATTGTGTGCGAGCAATCACCCCTCCG
CGCATTTTCCCTAAAAAAACAAGATAAAGAGAGAGAGGCTATGGGCAATA
CTCATGGGCAATCCTAGATTTATCGACCTCCCCCCCCCTTTCCCTTCCCG
CCTTCCGCCTCTCGTGGAAAAAAAATGAACTCCTCAAGAAGGACCGGCGC
GAAGACAGAAGCGCTTCTCCTTATCCAAACGACTCTGGTAAGCGTAAGCG
GGGACGTTCCGTGGAGGACGACGATTACTACCGTGATGTTGGCGCGGGGA
CGTCTCGCAAGGTGAGAGCTAAGCTGAGGGTTTCGATGCAGCGGGTTGGG
GTCCAGATTCGACGTTTTAGCTTTTACTGTGGATAACTTGTTGACCCCGA
CACACGTACAAAAAAGGGAACAATTACGTCAAAGCGCCTACAAAGAAAGA
AAACGAATAAAAACTTGCACCTGCAGTCTCCCAATGTTCAGTCCATAGAA
CTCATTTCCTGGAGAAAATGGCAAGTCTTTACGCAGGAGCATCCGGTCCT
TTGAAGGAAAATACTACATTCAAGATGACTCCAATTTATATAGGAAATGC
GGTTACAATCAGATCAGAACCTTGTCTGCTTATTCCCCCAGAAAGGTACT
TTCTACGGTATGTTGTCAAGATGGTCTCGCACGTCCGCGTAGCCCGATCT
TCCGAAAACTGTGTTTCTCGCGATTTTTAGCTGTGGGTATCTTCTTTCCC
TACTACGTAGCTCTTGTTTGATGCTGATTCCAAAAGCCTATCGCTTGTTG
TTGTAAGCAAAGGTCTGCAACTATCAGTATTAGTTTATGACTTCAAGTAT
TTTGCAGGGGTGCTGGAAGACCCGACCCCGCGTATTGGCGGGTGGGTTTC
CTACGCAACGACAGCCCGGGATGGGATACGCTTGTCAAAAGTTGTTGGGA
TCGGCTGTCTGTGCCCTACAACATCAATAGATTCCCCCAACATCAATTGA
AGGCAATCAAAAATATTTTCCGCTCGTGCCAAAAACGCGCTTCCTTCCCT
CTGTCCCAAGACGCGCGCGCACACACACACACACACACACCTTGATGCCC
TGCTGGAATGACCACTACGAGCTTTGTGCTTTGGATCGATCGATTGATTA
ATTATATAAAGTACACAGCAAGGCCGGATCCGATTGCGGCGGTCATTTGC
GATCTCACGAAAATACACGCACATAATTCCCCACTTTTCCATAAAATAAA
TAAAACAACCCCGCCGCGCACCCTCCTTCCTCCCCGGAAGGCCAACGCCC
CCGTAGGAAAACCTGCCGCCGGCAACACCAAGAAGGGCGACGGCGCCGAC
CGCACCCCAGAACGGTGGACTCCGACGGTCGATCCTGTTGATGCCTTGCT
AACCACCATCCCCGCCAGCAAGCACAAACGGTCTCGTCAGACTTCAAGTG
GAGGGGGGGGGGCTACCGTCGGCGCCAGCGACTTTTACACCAAGAGAAAC
AGACCGCGCTGAGAGAGGGAGAGAAAGAGAGAGGAATGGTTCCAGGATTT
TTGTTGTTTTTTCAATCCTTTGTTGGTACTTTTGCCACCTGGAACGTTTG
TTTTTTGCGAGACAGAGGGGAGGGGTATTACATTAATAGTGTAAAATGAT
GGGAAAAAAATATGACGTGTGAATTTGCAAAAAAAAAAAGAAAAAAAGAA
GAAGAAAAAGAATGCGTCGTTTCTCTTAAAGGTGGGGGGGGGTGTTAAGT
ATTTTTTCAAGGTCTGGAGAGACCGAAATGGTCCTCTGTCAGGTGTAGCG
GCTTGCTGTGGAGGGAAAATAGGGCTGATGGCTGATGGCTGACCTCTCGA
TGTTGGGTCTCGGATTTGTGGCACAGCGGCATGTGGAGGGAAGGGTTGTG
AGTGATGGGTAACATATTTTCCCCTCGTTGACATCGGCAGCAGGAGAGAG
AGGATGGCAGGGAAAGCGTCGTGTTTATGCGAAAACCGTGTGCATTTTCG
TGTTGGGTGCCTGATCTGGTCGACACTGGGACAGTGGGAAGCCTTGCGGG
ATATTTGTGTTCTCTTTCAGTGTGGTGGGATACATCTTGATAGAGTTCCA
TTTAGTGGGTGTGTCTGGGGGTGAGGGGCGTGGTGGTCGATGGTGTATCG
ATTCGTTAGTCACCATTGATGTGGACGAATTTAAGAGAAACGATGCTTCT
GAAACAATCCTCGTCGCGAGCGTCGGGCGACAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig131:678801..682833+

>mRNA_F-serratus_M_contig131.2333.1 ID=mRNA_F-serratus_M_contig131.2333.1|Name=mRNA_F-serratus_M_contig131.2333.1|organism=Fucus serratus male|type=CDS|length=2340bp|location=Sequence derived from alignment at F-serratus_M_contig131:678801..682833+ (Fucus serratus male)
ATGTTGGACGCGTACGGCCCTCAGCCCGACGGTGGTGCGCCTCCCCCAAA
AGCAGTGACGTCTTTCCGCGGCGGCGGCTATGAGGGACCGCAGCCACACC
ATCAGAACCAGAATACTCAACAACACCAGCAACAGCGACGATGGAATTCC
AGGGAGCGTCGCGACGGTGGCGGGCAAGGCTATCCTGAGCGCTCAACTCG
TCACGATAGTCGACACCGCTCTTCCGGTGGTAGCGGCGGGCACAGCGGTT
CCCACAAGCGTGACGAGGAAGGTTCAAGGCATGGCCGACGTGGAAGAGAT
GACAGAGACGGCGGAGATCGTAGAGACAGGTCTAAGGGTGGTAGGGGCGA
TAGTCGAGACAGCTACCGGGATAAAGAGAGGGGTCGAGGTCACGATCGGG
GTCGGGAGGGGGAGAGGCGAGGGAGTCGGGAGGTGGACAGGCGCGGAGGT
CGGGGTGACTGGAGCGACAGTCGAGACCGCAATAGCAAGCGGTCTCAGTC
GTGGGAAAGATGTTGGACGCGTACGGCCCTCAGCCCGACGGTGGTGCGCC
TCCCCCAAAAGCAGTGACGTCTTTCCGCGGCGGCGGCTATGAGGGACCGC
AGCCACACCATCAGAACCAGAATACTCAACAACACCAGCAACAGCGACGA
TGGAATTCCAGGGAGCGTCGCGACGGTGGCGGGCAAGGCTATCCTGAGCG
CTCAACTCGTCACGATAGTCGACACCGCTCTTCCGGTGGTAGCGGCGGGC
ACAGCGGTTCCCACAAGCGTGACGAGGAAGGTTCAAGGCATGGCCGACGT
GGAAGAGATGACAGAGACGGCGGAGATCGTAGAGACAGGTCTAAGGGTGG
TAGGGGCGATAGTCGAGACAGCTACCGGGATAAAGAGAGGGGTCGAGGTC
ACGATCGGGGTCGGGAGGGGGAGAGGCGAGGGAGTCGGGAGGTGGACAGG
CGCGGAGGTCGGGGTGACTGGAGCGACAGTCGAGACCGCAATAGCAAGCG
GTCTCAGTCGTGGGAAAGGCACGACTCCCGCGACGGGGACCAGCAACGTA
ATCGCCACCCGTCTCCGGCTCCGAGGCACCGAGGCTCCTCCAAGGAAAAT
CGGGATCGAGCGAATCCCTCCCCGAGCAAGCACAAGGCAGAGGGCGACCG
CGCACACGGCGCCAGCGATGCCGACGATGGTGGGAGGGAGCGAGGCGAGG
CCTCGCGCGGTCGCGGCGGGGACGTTACCGCCACCAGCAGCGTTGCGGGC
AAGGGGGAGGCCAAGCAGAAGAAGAAAAAGAAGGAGAAGGACCGGAAGGA
GAAGAAGGAAAAGAAAGACAAAAAGAAGGGAAAAAGGGCACGACTCCCGC
GACGGGGACCAGCAACGTAATCGCCACCCGTCTCCGGCTCCGAGGCACCG
AGGCTCCTCCAAGGAAAATCGGGATCGAGCGAATCCCTCCCCGAGCAAGC
ACAAGGCAGAGGGCGACCGCGCACACGGCGCCAGCGATGCCGACGATGGT
GGGAGGGAGCGAGGCGAGGCCTCGCGCGGTCGCGGCGGGGACGTTACCGC
CACCAGCAGCGTTGCGGGCAAGGGGGAGGCCAAGCAGAAGAAGAAAAAGA
AGGAGAAGGACCGGAAGGAGAAGAAGGAAAAGAAAGACAAAAAGAAGGGA
AAAAGGGACCGGCGCGAAGACAGAAGCGCTTCTCCTTATCCAAACGACTC
TGGTAAGCGTAAGCGGGGACGTTCCGTGGAGGACGACGATTACTACCGTG
ATGTTGGCGCGGGGACGTCTCGCAAGGACCGGCGCGAAGACAGAAGCGCT
TCTCCTTATCCAAACGACTCTGGTAAGCGTAAGCGGGGACGTTCCGTGGA
GGACGACGATTACTACCGTGATGTTGGCGCGGGGACGTCTCGCAAGGCCA
ACGCCCCCGTAGGAAAACCTGCCGCCGGCAACACCAAGAAGGGCGACGGC
GCCGACCGCACCCCAGAACGGTGGACTCCGACGGTCGATCCTGTTGATGC
CTTGCTAACCACCATCCCCGCCAGCAAGCACAAACGGTCTCGTCAGACTT
CAAGTGGAGGGGGGGGGGCTACCGTCGGCGCCAGCGACTTTTACACCAAG
AGAAACAGACCGCGCTGAGCCAACGCCCCCGTAGGAAAACCTGCCGCCGG
CAACACCAAGAAGGGCGACGGCGCCGACCGCACCCCAGAACGGTGGACTC
CGACGGTCGATCCTGTTGATGCCTTGCTAACCACCATCCCCGCCAGCAAG
CACAAACGGTCTCGTCAGACTTCAAGTGGAGGGGGGGGGGCTACCGTCGG
CGCCAGCGACTTTTACACCAAGAGAAACAGACCGCGCTGA
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