mRNA_F-serratus_M_contig1308.2305.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1308.2305.1
Unique NamemRNA_F-serratus_M_contig1308.2305.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 5.550e-22
Identity = 61/149 (40.94%), Postives = 88/149 (59.06%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRT----SITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIETHNASN------KHAFWTTLE 411
            ++  T NVRT+A  G++ +G  V+ V+ +    GCDVIGLQETRR+GQ + +  GY++  SG   G ++  K+G  GVG+A++     S+    R  E IS RL+KV L++ GR   VTF V YAP ET   +       K +FWT L+
Sbjct:  175 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALD 320          
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 7.300e-22
Identity = 60/149 (40.27%), Postives = 88/149 (59.06%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRTSITRA----DRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
            ++  T NV T+A  G++ +G  V+ V+ +    GCDVIGLQETRR GQ + +  GY++  SG   G ++  K+G  GVG+A++ +I  +     R  E IS RL+KV L++ GR   VTF V YAP ET       + + K +FWT L+
Sbjct:    9 LSFGTFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALD 154          
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 7.840e-22
Identity = 61/149 (40.94%), Postives = 89/149 (59.73%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRT----SITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
            ++  T NVRT+A  G++ +G  V+ V+ +    GCDVIGLQETRR+GQ + +  GY++  SG   G ++  K+G  GVG+A++     S+    R  E IS RL+KV L++ GR   VTF V YAP ET       + + K +FWT L+
Sbjct:   86 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALD 231          
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.690e-21
Identity = 59/149 (39.60%), Postives = 86/149 (57.72%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRT----SITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
            ++  T NVRT+A  G++ +G  V+ V+ +    GCDVIGLQETRR GQ + +  GY++  SG   G ++  K+G  GVG+A++     S+    R  E I  RL+KV L + GR   +TF V YAP ET       + + K +FWT L+
Sbjct:  148 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRI-GRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALD 293          
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.340e-20
Identity = 59/149 (39.60%), Postives = 86/149 (57.72%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRT----SITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
            ++    NVRT+A  G+  +G  V+ ++ +    GCDVIGLQETRR GQ + +  GY++  SG   G ++  K+G  GVG+A++     S+    R  E IS RL+KV L++ GR   VTF V YAP ET       + + K +FWT L+
Sbjct:   59 LSFGAFNVRTLAYSGRKPIGHNVMTIMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALD 204          
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.340e-20
Identity = 58/149 (38.93%), Postives = 88/149 (59.06%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRTS----ITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
            ++  T +VRT+   G++ +G  V+ V+ +    GCDVIGLQETRR GQ + +  GY++  SG   G ++  K+G+ GVG+A++ +    +    R  E IS RL+KV L++ GR   VTF V YAP ET       + + K +FWT L+
Sbjct:  155 LSFGTFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALD 300          
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.850e-20
Identity = 60/149 (40.27%), Postives = 87/149 (58.39%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRT----SITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
            ++  T NV T+A  G++ +G  V+ V+ +    GCDVIGLQETRR GQ + +  GY++  SG   G ++  K+G  GVG+A++     S+    R  E IS RL+KV L++ GR   VTF V YAP ET       + + K +FWT L+
Sbjct:  657 LSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALD 802          
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 4.580e-20
Identity = 58/149 (38.93%), Postives = 86/149 (57.72%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRT----SITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
            ++  T NVRT+A  G++ +G  V+ V+ +    GCDVIGLQETRR+GQ + +  GY++  SG   G ++  K+G  GVG+ ++     S+    R  E I  RL+KV L++ GR   V F V YAP ET       + + K +FWT L+
Sbjct:   81 LSFGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQI-GRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALD 226          
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.210e-19
Identity = 59/149 (39.60%), Postives = 86/149 (57.72%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRT----SITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
            ++  T NVRT+A  G++ +G  V+ V+ +    GCDVIGLQETRR GQ + +  GY++  SG   G ++  K+G  GVG+A++     S+    R  E  S RL+KV L++ GR   VTF V YA  ET       + + K +FWT L+
Sbjct:  820 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEVMWESVGEEGRTVECSSPRLMKVRLQI-GRTCRVTFVVGYALTETVRTTAGRDVNAKDSFWTALD 965          
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.210e-19
Identity = 58/149 (38.93%), Postives = 86/149 (57.72%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRT----SITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
            ++  T NVRT+A  G++ +G  V+ V+ ++   GCDVIGLQETRR GQ + +  GY++  SG   G ++  K+G  GVG+A++     S+    R  E IS RL+KV L++ G    V   V YAP ET       + + K +FWT L+
Sbjct:  133 LSFGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GHTCGVISVVGYAPTETVRTTAGGDVNAKDSFWTALD 278          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3Q1_9PHAE5.550e-2240.94Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KZE6_9PHAE7.300e-2240.27Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JMB4_9PHAE7.840e-2240.94Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L660_9PHAE5.690e-2139.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE1.340e-2039.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN7_9PHAE1.340e-2038.93Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1H7_9PHAE1.850e-2040.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV75_9PHAE4.580e-2038.93Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K0W6_9PHAE1.210e-1939.60Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K5A7_9PHAE1.210e-1938.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1308contigF-serratus_M_contig1308:15688..16101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size384
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929264.9528604-UTR-F-serratus_M_contig1308:15687..157171622929264.9528604-UTR-F-serratus_M_contig1308:15687..15717Fucus serratus maleUTRF-serratus_M_contig1308 15688..15717 +
1690962775.3133175-UTR-F-serratus_M_contig1308:15687..157171690962775.3133175-UTR-F-serratus_M_contig1308:15687..15717Fucus serratus maleUTRF-serratus_M_contig1308 15688..15717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929264.9641054-CDS-F-serratus_M_contig1308:15717..161011622929264.9641054-CDS-F-serratus_M_contig1308:15717..16101Fucus serratus maleCDSF-serratus_M_contig1308 15718..16101 +
1690962775.3225298-CDS-F-serratus_M_contig1308:15717..161011690962775.3225298-CDS-F-serratus_M_contig1308:15717..16101Fucus serratus maleCDSF-serratus_M_contig1308 15718..16101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1308.2305.1prot_F-serratus_M_contig1308.2305.1Fucus serratus malepolypeptideF-serratus_M_contig1308 15718..16101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1308.2305.1

>prot_F-serratus_M_contig1308.2305.1 ID=prot_F-serratus_M_contig1308.2305.1|Name=mRNA_F-serratus_M_contig1308.2305.1|organism=Fucus serratus male|type=polypeptide|length=128bp
MAVDGKHGVGRVLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCS
GECGDENGGKKGQGGVGLAVRTSITRADRPPEFISDRLLKVTLELRGRAK
AVTFFVAYAPIETHNASNKHAFWTTLE*
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mRNA from alignment at F-serratus_M_contig1308:15688..16101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1308.2305.1 ID=mRNA_F-serratus_M_contig1308.2305.1|Name=mRNA_F-serratus_M_contig1308.2305.1|organism=Fucus serratus male|type=mRNA|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig1308:15688..16101+ (Fucus serratus male)
ATCACAGTTGCCACACACAACGTACGGACGATGGCCGTGGATGGGAAGCA CGGAGTTGGACGGGTGCTCGATGTTCTGAGTGTGTATGATCGACTGGGGT GCGATGTTATCGGTCTACAGGAGACTCGACGCAGTGGACAATCAGCCTTC AGCCAGGCTGGCTACTTGGTGTACTGCAGCGGTGAGTGCGGTGATGAAAA TGGTGGGAAGAAAGGGCAAGGTGGAGTAGGACTAGCTGTGAGGACTTCCA TCACACGTGCTGATCGCCCCCCGGAGTTTATCAGTGATCGCTTGCTAAAG GTTACACTTGAACTTCGTGGCCGAGCCAAAGCCGTTACGTTTTTTGTGGC ATATGCTCCAATCGAAACACATAATGCTAGTAATAAACATGCATTTTGGA CGACTTTGGAATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1308:15688..16101+

>mRNA_F-serratus_M_contig1308.2305.1 ID=mRNA_F-serratus_M_contig1308.2305.1|Name=mRNA_F-serratus_M_contig1308.2305.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig1308:15688..16101+ (Fucus serratus male)
ATGGCCGTGGATGGGAAGCACGGAGTTGGACGGGTGCTCGATGTTCTGAG
TGTGTATGATCGACTGGGGTGCGATGTTATCGGTCTACAGGAGACTCGAC
GCAGTGGACAATCAGCCTTCAGCCAGGCTGGCTACTTGGTGTACTGCAGC
GGTGAGTGCGGTGATGAAAATGGTGGGAAGAAAGGGCAAGGTGGAGTAGG
ACTAGCTGTGAGGACTTCCATCACACGTGCTGATCGCCCCCCGGAGTTTA
TCAGTGATCGCTTGCTAAAGGTTACACTTGAACTTCGTGGCCGAGCCAAA
GCCGTTACGTTTTTTGTGGCATATGCTCCAATCGAAACACATAATGCTAG
TAATAAACATGCATTTTGGACGACTTTGGAATGAATGGCCGTGGATGGGA
AGCACGGAGTTGGACGGGTGCTCGATGTTCTGAGTGTGTATGATCGACTG
GGGTGCGATGTTATCGGTCTACAGGAGACTCGACGCAGTGGACAATCAGC
CTTCAGCCAGGCTGGCTACTTGGTGTACTGCAGCGGTGAGTGCGGTGATG
AAAATGGTGGGAAGAAAGGGCAAGGTGGAGTAGGACTAGCTGTGAGGACT
TCCATCACACGTGCTGATCGCCCCCCGGAGTTTATCAGTGATCGCTTGCT
AAAGGTTACACTTGAACTTCGTGGCCGAGCCAAAGCCGTTACGTTTTTTG
TGGCATATGCTCCAATCGAAACACATAATGCTAGTAATAAACATGCATTT
TGGACGACTTTGGAATGA
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