mRNA_F-serratus_M_contig1304.2295.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1304.2295.1
Unique NamemRNA_F-serratus_M_contig1304.2295.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1304.2295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1304contigF-serratus_M_contig1304:242870..243108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size168
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.6375432-CDS-F-serratus_M_contig1304:242869..2429561622929262.6375432-CDS-F-serratus_M_contig1304:242869..242956Fucus serratus maleCDSF-serratus_M_contig1304 242870..242956 +
1690962774.200572-CDS-F-serratus_M_contig1304:242869..2429561690962774.200572-CDS-F-serratus_M_contig1304:242869..242956Fucus serratus maleCDSF-serratus_M_contig1304 242870..242956 +
1622929262.6527898-CDS-F-serratus_M_contig1304:243029..2431071622929262.6527898-CDS-F-serratus_M_contig1304:243029..243107Fucus serratus maleCDSF-serratus_M_contig1304 243030..243107 +
1690962774.210331-CDS-F-serratus_M_contig1304:243029..2431071690962774.210331-CDS-F-serratus_M_contig1304:243029..243107Fucus serratus maleCDSF-serratus_M_contig1304 243030..243107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1304.2295.1prot_F-serratus_M_contig1304.2295.1Fucus serratus malepolypeptideF-serratus_M_contig1304 242870..243107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1304.2295.1

>prot_F-serratus_M_contig1304.2295.1 ID=prot_F-serratus_M_contig1304.2295.1|Name=mRNA_F-serratus_M_contig1304.2295.1|organism=Fucus serratus male|type=polypeptide|length=55bp
LPTLVSRNRHASGNAYCCSCVLRDVCWNPFSPEFSLSAVVSSFCKIKFSP
SSMHE
back to top

mRNA from alignment at F-serratus_M_contig1304:242870..243108+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1304.2295.1 ID=mRNA_F-serratus_M_contig1304.2295.1|Name=mRNA_F-serratus_M_contig1304.2295.1|organism=Fucus serratus male|type=mRNA|length=239bp|location=Sequence derived from alignment at F-serratus_M_contig1304:242870..243108+ (Fucus serratus male)
TTGCCGACGCTGGTCAGTCGCAACCGCCACGCGAGTGGCAACGCGTACTG
CTGTAGTTGCGTCTTGCGTGATGTTTGCTGGAACCCAGTTTTCCCCCGAA
TTTTTGGTCTTCTCGCTCTCCGCAGCAACTCGTATTGCTGTGGTATCCGC
TTGTACCCAGTTTTCCCCCGAATTCTCGCTCTCCGCCGTTGTGTCCTCGT
TTTGTAAAATAAAATTTTCCCCCTCATCCATGCATGAGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1304:242870..243108+

>mRNA_F-serratus_M_contig1304.2295.1 ID=mRNA_F-serratus_M_contig1304.2295.1|Name=mRNA_F-serratus_M_contig1304.2295.1|organism=Fucus serratus male|type=CDS|length=330bp|location=Sequence derived from alignment at F-serratus_M_contig1304:242870..243108+ (Fucus serratus male)
TTGCCGACGCTGGTCAGTCGCAACCGCCACGCGAGTGGCAACGCGTACTG
CTGTAGTTGCGTCTTGCGTGATGTTTGCTGGAACCCATTGCCGACGCTGG
TCAGTCGCAACCGCCACGCGAGTGGCAACGCGTACTGCTGTAGTTGCGTC
TTGCGTGATGTTTGCTGGAACCCATTTTCCCCCGAATTCTCGCTCTCCGC
CGTTGTGTCCTCGTTTTGTAAAATAAAATTTTCCCCCTCATCCATGCATG
AGTTTTCCCCCGAATTCTCGCTCTCCGCCGTTGTGTCCTCGTTTTGTAAA
ATAAAATTTTCCCCCTCATCCATGCATGAG
back to top