prot_F-serratus_M_contig1303.2289.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1303.2289.1
Unique Nameprot_F-serratus_M_contig1303.2289.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length594
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1303.2289.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 39..78
e-value: 2.8
score: 14.2
coord: 551..591
e-value: 1.3
score: 16.3
coord: 443..482
e-value: 0.002
score: 27.4
coord: 88..127
e-value: 0.0035
score: 26.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 455..482
e-value: 0.18
score: 12.8
coord: 92..127
e-value: 0.077
score: 13.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 95..127
score: 9.907
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 450..491
score: 11.478
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 2..223
e-value: 8.6E-16
score: 59.9
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 525..593
e-value: 2.3E-5
score: 25.8
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 377..514
e-value: 3.0E-8
score: 35.0
NoneNo IPR availablePANTHERPTHR19879TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 450..589
coord: 90..157
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 469..483
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 450..491
score: 10.917
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 46..136
score: 9.942
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 7..589

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1303contigF-serratus_M_contig1303:169831..172982 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1303.2289.1mRNA_F-serratus_M_contig1303.2289.1Fucus serratus malemRNAF-serratus_M_contig1303 169831..172982 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1303.2289.1 ID=prot_F-serratus_M_contig1303.2289.1|Name=mRNA_F-serratus_M_contig1303.2289.1|organism=Fucus serratus male|type=polypeptide|length=594bp
MESGPPVVIAGDEDGGVSVRRVPADATGEGVDAKSWSRRLEEPRRARLHD
AGVNSIKVLPQQRGFVCAGDDGVLSVVETLEVDASSDLRRVTTVLAGHRG
FVTECDTLSCGQAILSSSTDGRMLIWDPMASKTPVVSITVGRPVNSACFS
AGDPYALVCAPELERIPPGKGDCGFSGDGREDLVQIWDVRSLRCFRDAIP
AALTTAFTEACATPQSSFTDMQPPSHSPQAPFPSIWEHNASWQSTPVRIP
RARMPNRGPSWLVAALESSSAPSPATPLLRRSAWADESSNTESLTTPGNV
CIHGWSRLWATPTSEGPSEKENSHPFAAGGDLGSSQGDEGASEPCRRPSP
GTSMRCQSADVSPSLEACKGNGEDRRPSNYFTARATGQDEPASVLGQAFL
PSDSIGVGGCLHGGDGTIWLPGGKTTWSSSTGEVSSISARAVLPRQCAAC
SGGLTSVYSVQVSSDGRGILTASRDATVTLWDAQSRRVTYRFGHPRLSTR
ARPILWDEDSSAGGVGGLAGEEAGRGSGRRMVLTGMKDGELRPWRVGSRF
PNRVFKSARRHEGFEVTCLASSRDGSVFASADCGGNVCVQSATA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf