mRNA_F-serratus_M_contig1303.2289.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1303.2289.1
Unique NamemRNA_F-serratus_M_contig1303.2289.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1303.2289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1303contigF-serratus_M_contig1303:169831..172982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_000495.1
Exons6
Model size1782
Cds size1782
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1303.2289.1prot_F-serratus_M_contig1303.2289.1Fucus serratus malepolypeptideF-serratus_M_contig1303 169831..172982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.3661735-CDS-F-serratus_M_contig1303:169830..1699941622929262.3661735-CDS-F-serratus_M_contig1303:169830..169994Fucus serratus maleCDSF-serratus_M_contig1303 169831..169994 +
1690962774.0980048-CDS-F-serratus_M_contig1303:169830..1699941690962774.0980048-CDS-F-serratus_M_contig1303:169830..169994Fucus serratus maleCDSF-serratus_M_contig1303 169831..169994 +
1622929262.4548247-CDS-F-serratus_M_contig1303:170282..1704711622929262.4548247-CDS-F-serratus_M_contig1303:170282..170471Fucus serratus maleCDSF-serratus_M_contig1303 170283..170471 +
1690962774.1165628-CDS-F-serratus_M_contig1303:170282..1704711690962774.1165628-CDS-F-serratus_M_contig1303:170282..170471Fucus serratus maleCDSF-serratus_M_contig1303 170283..170471 +
1622929262.4713829-CDS-F-serratus_M_contig1303:170859..1710751622929262.4713829-CDS-F-serratus_M_contig1303:170859..171075Fucus serratus maleCDSF-serratus_M_contig1303 170860..171075 +
1690962774.1283774-CDS-F-serratus_M_contig1303:170859..1710751690962774.1283774-CDS-F-serratus_M_contig1303:170859..171075Fucus serratus maleCDSF-serratus_M_contig1303 170860..171075 +
1622929262.4852073-CDS-F-serratus_M_contig1303:171362..1716301622929262.4852073-CDS-F-serratus_M_contig1303:171362..171630Fucus serratus maleCDSF-serratus_M_contig1303 171363..171630 +
1690962774.1362936-CDS-F-serratus_M_contig1303:171362..1716301690962774.1362936-CDS-F-serratus_M_contig1303:171362..171630Fucus serratus maleCDSF-serratus_M_contig1303 171363..171630 +
1622929262.508474-CDS-F-serratus_M_contig1303:171968..1724221622929262.508474-CDS-F-serratus_M_contig1303:171968..172422Fucus serratus maleCDSF-serratus_M_contig1303 171969..172422 +
1690962774.1435428-CDS-F-serratus_M_contig1303:171968..1724221690962774.1435428-CDS-F-serratus_M_contig1303:171968..172422Fucus serratus maleCDSF-serratus_M_contig1303 171969..172422 +
1622929262.5231774-CDS-F-serratus_M_contig1303:172491..1729821622929262.5231774-CDS-F-serratus_M_contig1303:172491..172982Fucus serratus maleCDSF-serratus_M_contig1303 172492..172982 +
1690962774.1508315-CDS-F-serratus_M_contig1303:172491..1729821690962774.1508315-CDS-F-serratus_M_contig1303:172491..172982Fucus serratus maleCDSF-serratus_M_contig1303 172492..172982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1303.2289.1

>prot_F-serratus_M_contig1303.2289.1 ID=prot_F-serratus_M_contig1303.2289.1|Name=mRNA_F-serratus_M_contig1303.2289.1|organism=Fucus serratus male|type=polypeptide|length=594bp
MESGPPVVIAGDEDGGVSVRRVPADATGEGVDAKSWSRRLEEPRRARLHD
AGVNSIKVLPQQRGFVCAGDDGVLSVVETLEVDASSDLRRVTTVLAGHRG
FVTECDTLSCGQAILSSSTDGRMLIWDPMASKTPVVSITVGRPVNSACFS
AGDPYALVCAPELERIPPGKGDCGFSGDGREDLVQIWDVRSLRCFRDAIP
AALTTAFTEACATPQSSFTDMQPPSHSPQAPFPSIWEHNASWQSTPVRIP
RARMPNRGPSWLVAALESSSAPSPATPLLRRSAWADESSNTESLTTPGNV
CIHGWSRLWATPTSEGPSEKENSHPFAAGGDLGSSQGDEGASEPCRRPSP
GTSMRCQSADVSPSLEACKGNGEDRRPSNYFTARATGQDEPASVLGQAFL
PSDSIGVGGCLHGGDGTIWLPGGKTTWSSSTGEVSSISARAVLPRQCAAC
SGGLTSVYSVQVSSDGRGILTASRDATVTLWDAQSRRVTYRFGHPRLSTR
ARPILWDEDSSAGGVGGLAGEEAGRGSGRRMVLTGMKDGELRPWRVGSRF
PNRVFKSARRHEGFEVTCLASSRDGSVFASADCGGNVCVQSATA
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mRNA from alignment at F-serratus_M_contig1303:169831..172982+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1303.2289.1 ID=mRNA_F-serratus_M_contig1303.2289.1|Name=mRNA_F-serratus_M_contig1303.2289.1|organism=Fucus serratus male|type=mRNA|length=3152bp|location=Sequence derived from alignment at F-serratus_M_contig1303:169831..172982+ (Fucus serratus male)
ATGGAATCAGGTCCTCCTGTGGTTATCGCTGGGGATGAAGATGGTGGCGT
CTCCGTGCGACGAGTGCCTGCGGACGCCACAGGCGAGGGCGTGGATGCCA
AATCGTGGTCGAGGAGGCTCGAGGAGCCACGGCGGGCCCGACTCCACGAC
GCCGGCGTCAACAGGTATCGCAATCGGGCAGATCCACGGTTTCATATCCG
GATACCTGGTATGTCATTAATAATCAATCAATACCACGGTAATGATGTAC
CCGTAATGATTAGAGTGACGACGCACCTCCTCGGCCATGGACGCAATCCA
ATCCTATTATTAATAGTGCCTAATTGTGGCAGACAACCGACACTATGGTT
CTGGTACAGCAGCAGCAGCAGTTTGTGTATGAATTGGATCACCTCGCGGC
ATAGGTTGACAATCCTTTTAATAAAATTTACTGTAATCCCACGCTGCGGC
AGCATAAAAGTCCTGCCACAGCAGAGGGGGTTTGTGTGTGCTGGGGACGA
CGGGGTCCTTAGCGTCGTGGAAACCCTCGAGGTTGATGCGAGCAGCGACC
TCCGAAGGGTTACGACGGTGTTGGCGGGGCATCGCGGATTTGTCACGGAA
TGCGACACGCTCTCCTGCGGCCAGGCTATCTTATCGAGCAGGTTTGGAAA
TGGTAGAGCCGGACTATGATATCTTGTGTCTGATGGTAGTTCTTTTTCGA
ATCTTGTGATTCACTGAAGGGTTTTGTAAGGGGGGGGAGGGGGTAATCCT
GCCGCCATTCAGCAGCAGCGTGATTATCTTTCCGGCTATTATCGTCACGC
GATCATAAACAAAAAAGAAGTTTACAAACATCCACGATACCACCACGCCT
TCGCCTCGATGAGGAAACCCCATACTCGTAGCGTTGGTTTTATCATTTAT
TAATAGTGTAGCAACGTAATAACGCCGTATGAATAGACTCTTCTCGTCGT
CGATCTCTCGCGAGACCTAGAAAAAGACGTAAGCGTGCAACGCCGCATTC
TGCACTCTTGTCCTCTCCCTCTCCCTCAGCACCGACGGCAGAATGCTCAT
CTGGGACCCGATGGCCTCCAAGACGCCCGTGGTGAGCATCACTGTGGGTC
GACCGGTCAACAGCGCGTGCTTTTCCGCAGGAGACCCCTACGCGTTAGTG
TGCGCGCCCGAGCTCGAGCGGATTCCACCCGGAAAGGGCGACTGTGGTTT
TTCGGGTGACGGAAGGGAAGACCTCGTACAGATCTGGGATGTCAGGTACC
CGTACGTTGTTTTCATGGTTTCTTATACCTTTCCTCCACCGTCGACAGTG
TGTTGTGTTAGTTTTGATGTTGATATTAGTGTTAGTACTCGCCTCCCACG
CAGTGTAGAGGCGCGGCTTCTTGATCTGACCTTATTCGCAGCAATGGTCG
AGTCGAGCAAAGGTCTCGGCGTAGTGTGTCGGCTTTTTTCTTGTCACGTG
TTTCGTCCTGCTCGACCCGATTTTGGTTCGTACACTCCTGACTCAGTATA
TACCTTCTGCTTCCTCCGCGTTTCGCGCACAGGTCTCTACGATGCTTTCG
CGACGCCATCCCAGCAGCCCTTACAACGGCCTTCACCGAAGCCTGCGCCA
CCCCTCAATCTTCTTTCACTGACATGCAGCCTCCGTCGCATTCTCCTCAA
GCGCCCTTTCCTTCGATCTGGGAGCACAACGCCTCCTGGCAGTCTACACC
GGTACGCATCCCTCGGGCGCGTATGCCTAATAGAGGCCCCTCATGGCTGG
TAGCCGCCTTGGAATCTTCTTCAGCACCTTCGCCAGCGACTCCGCTTCTG
GTGAGACTGATGTGACTTTGTATAGATTATTGTGCTCCCCCATCGACACC
CACTCTGAGGACATTATTGCACGTTTTTGCGCCCTTCGTACACTGCATTA
GACTTACATGGACATCATTGCGTCTTGGTTGTGCGGCCTTCGTACACCGT
TTTCGACACGATGTGGCTGTCGGCAAGCTTGGCATGACCCTTCTCATCAG
CCATCATATCATAAGCCTTGCGCCGTGGGAGGAGGAGCGGGTTGCACCAC
TCGTGCGGGGAAACCTCGCCTCTCCACTGGTCTCTCCTCTGATCTTTCCT
GTCCAACCTACCCGCGGCCTGTTTCTTGGTTTTGGCAGCGGAGATCTGCC
TGGGCGGACGAAAGCAGCAACACTGAGTCCCTGACCACTCCAGGCAACGT
GTGCATTCACGGTTGGAGCCGCTTGTGGGCAACTCCGACGTCGGAGGGAC
CGAGCGAAAAGGAAAATTCCCACCCCTTTGCGGCCGGCGGAGATCTCGGA
AGCAGCCAAGGAGATGAAGGGGCCAGCGAACCCTGCCGTCGTCCTTCGCC
TGGCACCAGCATGAGATGCCAATCCGCCGACGTTTCACCCTCTCTCGAAG
CCTGCAAGGGAAATGGTGAGGACCGAAGGCCGTCGAATTACTTTACAGCG
CGGGCGACGGGGCAGGATGAACCCGCGTCGGTTCTTGGCCAGGCGTTTCT
CCCGAGTGACTCCATTGGCGTCGGCGGGTGCCTCCACGGAGGAGACGGGA
CAATTTGGCTCCCTGGGGGGAAGACTACCTGGTCCTCGAGCAGTAGCAGA
CGACGACCGCGTGCCGCCTGCAATCGACGCTTACGGCGTGTGGTCGGTTA
TGGCACGGAAGCGGGCGAAGTCTCTTCCATCTCTGCGCGTGCTGTCCTAC
CGCGGCAGTGCGCCGCGTGTAGTGGAGGCCTCACCAGCGTCTACAGCGTA
CAGGTGTCTTCAGACGGGAGGGGGATTCTGACGGCGTCAAGAGACGCTAC
CGTGACGCTGTGGGATGCGCAGTCCAGGCGAGTCACGTACCGCTTCGGCC
ACCCCCGACTCTCCACGCGAGCGCGGCCGATTTTGTGGGACGAGGACTCG
AGCGCCGGGGGGGTTGGGGGCTTAGCAGGGGAGGAAGCTGGCAGAGGAAG
TGGTCGAAGAATGGTTCTCACCGGCATGAAGGACGGAGAATTGAGGCCTT
GGAGGGTGGGGTCGCGGTTTCCTAATCGCGTGTTCAAGTCTGCGCGACGG
CATGAGGGCTTCGAGGTCACCTGCTTGGCGTCTAGCCGGGACGGAAGCGT
TTTCGCTTCGGCTGATTGTGGCGGTAATGTTTGTGTGCAGTCTGCTACAG
CG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1303:169831..172982+

>mRNA_F-serratus_M_contig1303.2289.1 ID=mRNA_F-serratus_M_contig1303.2289.1|Name=mRNA_F-serratus_M_contig1303.2289.1|organism=Fucus serratus male|type=CDS|length=3564bp|location=Sequence derived from alignment at F-serratus_M_contig1303:169831..172982+ (Fucus serratus male)
ATGGAATCAGGTCCTCCTGTGGTTATCGCTGGGGATGAAGATGGTGGCGT
CTCCGTGCGACGAGTGCCTGCGGACGCCACAGGCGAGGGCGTGGATGCCA
AATCGTGGTCGAGGAGGCTCGAGGAGCCACGGCGGGCCCGACTCCACGAC
GCCGGCGTCAACAGATGGAATCAGGTCCTCCTGTGGTTATCGCTGGGGAT
GAAGATGGTGGCGTCTCCGTGCGACGAGTGCCTGCGGACGCCACAGGCGA
GGGCGTGGATGCCAAATCGTGGTCGAGGAGGCTCGAGGAGCCACGGCGGG
CCCGACTCCACGACGCCGGCGTCAACAGCATAAAAGTCCTGCCACAGCAG
AGGGGGTTTGTGTGTGCTGGGGACGACGGGGTCCTTAGCGTCGTGGAAAC
CCTCGAGGTTGATGCGAGCAGCGACCTCCGAAGGGTTACGACGGTGTTGG
CGGGGCATCGCGGATTTGTCACGGAATGCGACACGCTCTCCTGCGGCCAG
GCTATCTTATCGAGCAGCATAAAAGTCCTGCCACAGCAGAGGGGGTTTGT
GTGTGCTGGGGACGACGGGGTCCTTAGCGTCGTGGAAACCCTCGAGGTTG
ATGCGAGCAGCGACCTCCGAAGGGTTACGACGGTGTTGGCGGGGCATCGC
GGATTTGTCACGGAATGCGACACGCTCTCCTGCGGCCAGGCTATCTTATC
GAGCAGCACCGACGGCAGAATGCTCATCTGGGACCCGATGGCCTCCAAGA
CGCCCGTGGTGAGCATCACTGTGGGTCGACCGGTCAACAGCGCGTGCTTT
TCCGCAGGAGACCCCTACGCGTTAGTGTGCGCGCCCGAGCTCGAGCGGAT
TCCACCCGGAAAGGGCGACTGTGGTTTTTCGGGTGACGGAAGGGAAGACC
TCGTACAGATCTGGGATGTCAGCACCGACGGCAGAATGCTCATCTGGGAC
CCGATGGCCTCCAAGACGCCCGTGGTGAGCATCACTGTGGGTCGACCGGT
CAACAGCGCGTGCTTTTCCGCAGGAGACCCCTACGCGTTAGTGTGCGCGC
CCGAGCTCGAGCGGATTCCACCCGGAAAGGGCGACTGTGGTTTTTCGGGT
GACGGAAGGGAAGACCTCGTACAGATCTGGGATGTCAGGTCTCTACGATG
CTTTCGCGACGCCATCCCAGCAGCCCTTACAACGGCCTTCACCGAAGCCT
GCGCCACCCCTCAATCTTCTTTCACTGACATGCAGCCTCCGTCGCATTCT
CCTCAAGCGCCCTTTCCTTCGATCTGGGAGCACAACGCCTCCTGGCAGTC
TACACCGGTACGCATCCCTCGGGCGCGTATGCCTAATAGAGGCCCCTCAT
GGCTGGTAGCCGCCTTGGAATCTTCTTCAGCACCTTCGCCAGCGACTCCG
CTTCTGGTCTCTACGATGCTTTCGCGACGCCATCCCAGCAGCCCTTACAA
CGGCCTTCACCGAAGCCTGCGCCACCCCTCAATCTTCTTTCACTGACATG
CAGCCTCCGTCGCATTCTCCTCAAGCGCCCTTTCCTTCGATCTGGGAGCA
CAACGCCTCCTGGCAGTCTACACCGGTACGCATCCCTCGGGCGCGTATGC
CTAATAGAGGCCCCTCATGGCTGGTAGCCGCCTTGGAATCTTCTTCAGCA
CCTTCGCCAGCGACTCCGCTTCTGCGGAGATCTGCCTGGGCGGACGAAAG
CAGCAACACTGAGTCCCTGACCACTCCAGGCAACGTGTGCATTCACGGTT
GGAGCCGCTTGTGGGCAACTCCGACGTCGGAGGGACCGAGCGAAAAGGAA
AATTCCCACCCCTTTGCGGCCGGCGGAGATCTCGGAAGCAGCCAAGGAGA
TGAAGGGGCCAGCGAACCCTGCCGTCGTCCTTCGCCTGGCACCAGCATGA
GATGCCAATCCGCCGACGTTTCACCCTCTCTCGAAGCCTGCAAGGGAAAT
GGTGAGGACCGAAGGCCGTCGAATTACTTTACAGCGCGGGCGACGGGGCA
GGATGAACCCGCGTCGGTTCTTGGCCAGGCGTTTCTCCCGAGTGACTCCA
TTGGCGTCGGCGGGTGCCTCCACGGAGGAGACGGGACAATTTGGCTCCCT
GGGGGGAAGACTACCTGGTCCTCGAGCACGGAGATCTGCCTGGGCGGACG
AAAGCAGCAACACTGAGTCCCTGACCACTCCAGGCAACGTGTGCATTCAC
GGTTGGAGCCGCTTGTGGGCAACTCCGACGTCGGAGGGACCGAGCGAAAA
GGAAAATTCCCACCCCTTTGCGGCCGGCGGAGATCTCGGAAGCAGCCAAG
GAGATGAAGGGGCCAGCGAACCCTGCCGTCGTCCTTCGCCTGGCACCAGC
ATGAGATGCCAATCCGCCGACGTTTCACCCTCTCTCGAAGCCTGCAAGGG
AAATGGTGAGGACCGAAGGCCGTCGAATTACTTTACAGCGCGGGCGACGG
GGCAGGATGAACCCGCGTCGGTTCTTGGCCAGGCGTTTCTCCCGAGTGAC
TCCATTGGCGTCGGCGGGTGCCTCCACGGAGGAGACGGGACAATTTGGCT
CCCTGGGGGGAAGACTACCTGGTCCTCGAGCACGGGCGAAGTCTCTTCCA
TCTCTGCGCGTGCTGTCCTACCGCGGCAGTGCGCCGCGTGTAGTGGAGGC
CTCACCAGCGTCTACAGCGTACAGGTGTCTTCAGACGGGAGGGGGATTCT
GACGGCGTCAAGAGACGCTACCGTGACGCTGTGGGATGCGCAGTCCAGGC
GAGTCACGTACCGCTTCGGCCACCCCCGACTCTCCACGCGAGCGCGGCCG
ATTTTGTGGGACGAGGACTCGAGCGCCGGGGGGGTTGGGGGCTTAGCAGG
GGAGGAAGCTGGCAGAGGAAGTGGTCGAAGAATGGTTCTCACCGGCATGA
AGGACGGAGAATTGAGGCCTTGGAGGGTGGGGTCGCGGTTTCCTAATCGC
GTGTTCAAGTCTGCGCGACGGCATGAGGGCTTCGAGGTCACCTGCTTGGC
GTCTAGCCGGGACGGAAGCGTTTTCGCTTCGGCTGATTGTGGCGGTAATG
TTTGTGTGCAGTCTGCTACAGCGCGGGCGAAGTCTCTTCCATCTCTGCGC
GTGCTGTCCTACCGCGGCAGTGCGCCGCGTGTAGTGGAGGCCTCACCAGC
GTCTACAGCGTACAGGTGTCTTCAGACGGGAGGGGGATTCTGACGGCGTC
AAGAGACGCTACCGTGACGCTGTGGGATGCGCAGTCCAGGCGAGTCACGT
ACCGCTTCGGCCACCCCCGACTCTCCACGCGAGCGCGGCCGATTTTGTGG
GACGAGGACTCGAGCGCCGGGGGGGTTGGGGGCTTAGCAGGGGAGGAAGC
TGGCAGAGGAAGTGGTCGAAGAATGGTTCTCACCGGCATGAAGGACGGAG
AATTGAGGCCTTGGAGGGTGGGGTCGCGGTTTCCTAATCGCGTGTTCAAG
TCTGCGCGACGGCATGAGGGCTTCGAGGTCACCTGCTTGGCGTCTAGCCG
GGACGGAAGCGTTTTCGCTTCGGCTGATTGTGGCGGTAATGTTTGTGTGC
AGTCTGCTACAGCG
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