mRNA_F-serratus_M_contig1302.2281.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1302.2281.1 vs. uniprot
Match: A0A6H5JCP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP2_9PHAE) HSP 1 Score: 222 bits (565), Expect = 3.730e-68 Identity = 125/260 (48.08%), Postives = 139/260 (53.46%), Query Frame = 1
Query: 34 SRYPTLETPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCVMVGAIAATGGGTTRDLLLGQTPVFWLVEV--------------------------------------------------------------------------------------------------------EYVGICITTALATFFLWPILSRVSVLSHMGTDFDGWLSQALDTIGLASFAVVGTQHGIRKGCHPLVTIIICMVTCSGGGIIRDV 501
SRYP ++PGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGC+ VG +AATGGGT RDLLLGQTPVFWLVEV EYV IC+ TA+ TF LWP+LSRVSVLSHMGT DGWLSQA+DT+GLASFAV TQ+GIR+ CHP TI+IC +TCSGGGI+RDV
Sbjct: 105 SRYPNFKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVGVRGAWIVLFFCGAGDLVGRSLCPTSPCAFLRFLACLDAWVELALRRFCSVDGGVGCLPSLALLFLIGRIWRCLLMFVLRHSSVVWPVAVLLSWTPLLLPLSQVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDV 364
BLAST of mRNA_F-serratus_M_contig1302.2281.1 vs. uniprot
Match: A0A835ZGC7_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC7_9STRA) HSP 1 Score: 202 bits (515), Expect = 1.410e-62 Identity = 96/156 (61.54%), Postives = 120/156 (76.92%), Query Frame = 1
Query: 34 SRYPTLETPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCVMVGAIAATGGGTTRDLLLGQTPVFWLVEVEYVGICITTALATFFLWPILSRVSVLSHMGTDFDGWLSQALDTIGLASFAVVGTQHGIRKGCHPLVTIIICMVTCSGGGIIRDV 501
+RYP+L + GGL+R LDY+GTV+FA GA AG GM+LLGC+ +G I A GGGTTRDLLLGQTPVFWL EVEY+ +CI T++ATF+ WP L + +LS G+ DG L + LDTIGL +FAVVGTQHGIR+ HPL T++I +TCS GG+ RDV
Sbjct: 47 TRYPSLRSAGGLLRSLDYLGTVAFATGGAICAGRAGMDLLGCIEIGVITAMGGGTTRDLLLGQTPVFWLQEVEYLAMCIVTSIATFYAWPHLRHMPILSASGSSDDGALPRWLDTIGLGAFAVVGTQHGIRRRLHPLATVVIATITCSFGGVTRDV 202
BLAST of mRNA_F-serratus_M_contig1302.2281.1 vs. uniprot
Match: D8LE41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE41_ECTSI) HSP 1 Score: 157 bits (396), Expect = 4.410e-44 Identity = 77/160 (48.12%), Postives = 104/160 (65.00%), Query Frame = 1
Query: 28 GTSRYPTLETPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCVMVGAIAATGGGTTRDLLLGQTPVFWLVEVEYVGICITTALATFFLWPILSRVSVLSHMGTDFDGWLSQALDTIGLASFAVVGTQHGIRKGCHPLVTIIICMVTCSGGGIIRDVSC 507
G +RYPT +P G++R LDY+GT FA+SG TAG GM+LLGC++VG I ATGGGT RD+LLG TPVFW+ E EY+ +C+ T + FFLW L+ V M L +D +G+ +F +G Q G+RKG +V + M+T + GG+IRDV C
Sbjct: 71 GLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTPVFWMHETEYLWMCLATTVGIFFLWSYLAERGVRDDMA------LLNWVDAMGVGAFCCIGAQAGVRKGLSNVVCVACGMLTSTFGGVIRDVLC 224
BLAST of mRNA_F-serratus_M_contig1302.2281.1 vs. uniprot
Match: A0A6H5JGY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY7_9PHAE) HSP 1 Score: 157 bits (398), Expect = 1.430e-43 Identity = 77/160 (48.12%), Postives = 106/160 (66.25%), Query Frame = 1
Query: 28 GTSRYPTLETPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCVMVGAIAATGGGTTRDLLLGQTPVFWLVEVEYVGICITTALATFFLWPILSRVSVLSHMGTDFDGWLSQALDTIGLASFAVVGTQHGIRKGCHPLVTIIICMVTCSGGGIIRDVSC 507
G +RYPT +P G++R LDY+GT FA+SG TAG GM+LLGC++VG I ATGGGT RD+LLG TPVFW+ E EY+ +C+ T++ FFLW L+ V + M L +D +G+ +F +G Q G+RKG +V + M+T + GG+IRDV C
Sbjct: 153 GLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGHVGMDLLGCIIVGTITATGGGTVRDMLLGNTPVFWMHETEYLWMCLATSVGVFFLWSYLAERGVRNDMA------LLNWVDAMGVGAFCCIGAQAGVRKGLSNVVCVACGMLTSTFGGVIRDVLC 306
BLAST of mRNA_F-serratus_M_contig1302.2281.1 vs. uniprot
Match: A0A5J4Z897_PORPP (UPF0126 membrane protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z897_PORPP) HSP 1 Score: 154 bits (390), Expect = 1.130e-42 Identity = 74/164 (45.12%), Postives = 106/164 (64.63%), Query Frame = 1
Query: 7 AASLTLTGTSRYPTLETPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCVMVGAIAATGGGTTRDLLLGQTPVFWLVEVEYVGICITTALATFFLWPILSRVSVLSHMGTDFDGWLSQALDTIGLASFAVVGTQHGIRKGCHPLVTIIICMVTCSGGGIIRD 498
A ++ + RYP L PGG +R DY+GT FA++GA TA GM++LGC +VG I A GGGTTRDLL+G PVFWL+E EY+ I + T+L FF WP +S +G D + +D+ L +F+ +GT +GIR G +PL+ ++ +VTC+ GG++RD
Sbjct: 116 APAVHIDSMPRYPDLS-PGGFLRAFDYIGTSIFALTGALTAASGGMDVLGCTVVGTITAVGGGTTRDLLMGARPVFWLIESEYIAIAVATSLLAFFFWPDVSDA-----LGITEDEYFINVIDSWSLGAFSCIGTMNGIRAGYNPLIVLVCAVVTCTFGGVVRD 273
BLAST of mRNA_F-serratus_M_contig1302.2281.1 vs. uniprot
Match: C1MVB5_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MVB5_MICPC) HSP 1 Score: 152 bits (384), Expect = 2.240e-41 Identity = 84/162 (51.85%), Postives = 102/162 (62.96%), Query Frame = 1
Query: 22 LTGTSRYPTLETPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCVMVGAIAATGGGTTRDLLLGQ-TPVFWLVEVEYVGICITTALATFFLWPILSRVSVLSHMGTDFDGWLSQALDTIGLASFAVVGTQHGIRKGCHPLVTIIIC-MVTCSGGGIIRDV 501
+ G RYP L PG L RFLDY GT SFAM+G A RGM+LLGCV+VG I A GGGT RDLLLG+ FW+ E+EY+ IC+ T + TF WP L R G D W +A D IG+ +F V+G Q+GIR G PL +I C M T + GG+IRDV
Sbjct: 143 IDGMPRYPELSIPGTL-RFLDYFGTASFAMTGTLAAAARGMDLLGCVVVGTITAVGGGTVRDLLLGRGRRAFWMEEIEYLWICLGTGVLTFLSWPTLRR-----EFGVDESDWWVEAWDAIGVGAFCVIGAQNGIRAGV-PLPAVIACGMFTATFGGVIRDV 297
BLAST of mRNA_F-serratus_M_contig1302.2281.1 vs. uniprot
Match: A0A836CDZ5_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ5_9STRA) HSP 1 Score: 148 bits (373), Expect = 7.230e-41 Identity = 75/160 (46.88%), Postives = 99/160 (61.88%), Query Frame = 1
Query: 28 GTSRYPTLETPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCVMVGAIAATGGGTTRDLLLGQTPVFWLVEVEYVGICITTALATFFLWPILSRVSVLSHMGTDFDGWLSQALDTIGLASFAVVGTQHGIRKGCHPLVTIIICMVTCSGGGIIRDVSC 507
G +RYP+L +P G++R LD GTV FA SG TAG GM+LLGC +VG I A GGGT RDLLLG TPVFW+ E EY+ IC+ A+ TFF + S L+ G D L D +G+ +F V+G Q+ +R+ + + M T + GG+IRDV C
Sbjct: 23 GLTRYPSLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGNTPVFWMTETEYLYICLAAAVGTFFTY------SALAEQGFTTDSELLNWADALGVGAFCVIGAQNAVRRRLSTAICVACGMFTATFGGVIRDVLC 176
BLAST of mRNA_F-serratus_M_contig1302.2281.1 vs. uniprot
Match: A0A7S1TDV4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDV4_9RHOD) HSP 1 Score: 145 bits (367), Expect = 9.640e-41 Identity = 77/166 (46.39%), Postives = 105/166 (63.25%), Query Frame = 1
Query: 10 ASLTLTGTSRYPTLETPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCVMVGAIAATGGGTTRDLLLGQTPVFWLVEVEYVGICITTALATFFLWPILSRVSVLSHMGTDFDGWLSQALDTIGLASFAVVGTQHGIRKGCHPLVTIIICMVTCSGGGIIRDVSC 507
+S + G R+P GGL+R LDY GT+ FA SG A GM+LLGC +VGAI A GGGT RDL LG PVFW+VE EY+ +C+ T+ T LWP+L+R S S + + D GL++F V+G Q+GIR G P+++++ M+T + GG+IRDV C
Sbjct: 1 SSSIVDGMPRFPNWSA-GGLLRGLDYGGTIVFAFSGTVQAAAHGMDLLGCSVVGAITAVGGGTVRDLFLGNRPVFWMVETEYLILCLITSGLTLALWPVLTRDSNSSSTFKKVELYS----DAAGLSAFCVIGAQNGIRLGVPPIISVVCGMMTATFGGVIRDVLC 161
BLAST of mRNA_F-serratus_M_contig1302.2281.1 vs. uniprot
Match: A0A7S1XFC8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XFC8_9RHOD) HSP 1 Score: 146 bits (368), Expect = 6.840e-40 Identity = 77/167 (46.11%), Postives = 106/167 (63.47%), Query Frame = 1
Query: 7 AASLTLTGTSRYPTLETPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCVMVGAIAATGGGTTRDLLLGQTPVFWLVEVEYVGICITTALATFFLWPILSRVSVLSHMGTDFDGWLSQALDTIGLASFAVVGTQHGIRKGCHPLVTIIICMVTCSGGGIIRDVSC 507
++S + G R+P GGL+R LDY GT+ FA SG A GM+LLGC +VGAI A GGGT RDL LG PVFW+VE EY+ +C+ T+ T LWP+L+R S S + + D GL++F V+G Q+GIR G P+++++ M+T + GG+IRDV C
Sbjct: 90 SSSSMVDGMPRFPNWSA-GGLLRGLDYGGTIVFAFSGTVQAAAHGMDLLGCSVVGAITAVGGGTVRDLFLGNRPVFWMVETEYLILCLITSGLTLALWPVLTRDSNSSSTFKKVELYS----DAAGLSAFCVIGAQNGIRLGVPPIISVVCGMMTATFGGVIRDVLC 251
BLAST of mRNA_F-serratus_M_contig1302.2281.1 vs. uniprot
Match: A0A6T5MA33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5MA33_HETAK) HSP 1 Score: 145 bits (367), Expect = 1.130e-39 Identity = 75/160 (46.88%), Postives = 99/160 (61.88%), Query Frame = 1
Query: 28 GTSRYPTLETPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCVMVGAIAATGGGTTRDLLLGQTPVFWLVEVEYVGICITTALATFFLWPILSRVSVLSHMGTDFDGWLSQALDTIGLASFAVVGTQHGIRKGCHPLVTIIICMVTCSGGGIIRDVSC 507
G R+P+ GGL+R LDY GTV FA+ G+ TAG+ GM+LLGC +VG + A GGGT RDLLLG PVFW++E EYV + + A A FF W L L W D G+ +F+V+G Q+G+R G HP V ++ M+T + GG+IRDV C
Sbjct: 105 GMPRFPSTSA-GGLLRGLDYFGTVVFALGGSVTAGLAGMDLLGCTIVGTVTAVGGGTVRDLLLGNFPVFWMLETEYVLLSLACAWAGFFGWDYLHEHWHLEENSDILRWW-----DACGVGAFSVIGAQNGLRAGLHPAVAVVCGMITATFGGMIRDVLC 258 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1302.2281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1302.2281.1 >prot_F-serratus_M_contig1302.2281.1 ID=prot_F-serratus_M_contig1302.2281.1|Name=mRNA_F-serratus_M_contig1302.2281.1|organism=Fucus serratus male|type=polypeptide|length=169bp RPAASLTLTGTSRYPTLETPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLback to top mRNA from alignment at F-serratus_M_contig1302:217427..218447- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1302.2281.1 ID=mRNA_F-serratus_M_contig1302.2281.1|Name=mRNA_F-serratus_M_contig1302.2281.1|organism=Fucus serratus male|type=mRNA|length=1021bp|location=Sequence derived from alignment at F-serratus_M_contig1302:217427..218447- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1302:217427..218447- >mRNA_F-serratus_M_contig1302.2281.1 ID=mRNA_F-serratus_M_contig1302.2281.1|Name=mRNA_F-serratus_M_contig1302.2281.1|organism=Fucus serratus male|type=CDS|length=1014bp|location=Sequence derived from alignment at F-serratus_M_contig1302:217427..218447- (Fucus serratus male)back to top |