mRNA_F-serratus_M_contig130.2257.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig130.2257.1
Unique NamemRNA_F-serratus_M_contig130.2257.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig130.2257.1 vs. uniprot
Match: D8LS41_ECTSI (Uroporphyrinogen-III synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS41_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 2.880e-105
Identity = 198/351 (56.41%), Postives = 217/351 (61.82%), Query Frame = 3
Query:  135 FRVGPFWH--VVGRRQ-LGCVDPPLVRGCSGGSGLSAATMSAQEGAPTIRTKSADMAEVALTREAGKNKKLASRLEEAGISCVEIPCIRHQDGPDLPLLPTALEDRDLAYVVITSPEAAKVFLSGWEGAGQPAVPV--ACVGKATSETLEKSGIKSVFTPSKATGETLAAELPIPDEYAGMERR---------------------------PRVLYPASARAQMTLESGLVARGFHVQRLNTYDTVPAEWDASAEAAAMAASVVAFGSPSAVKTWAVRAGVARETTRT--------------GALAACIGETSARACREAGWAESTIFYPAKPGMEGWARAILDAVAVAKT 1049
            F   P WH  ++GR + +G   P   RGC            A  GA           EVALTREAGKN KLA  L +AGIS VE+PCI HQDGPDLPLLP AL D  LAYVV+TSPEAAKVFL+GW  AG P VPV  ACVGKAT + L   G+  VFTPSKATGETLAAE+P+P      +                             PRVLYPASA+AQ TLESGL ARGF V+RLNTYDTVPA WD SAEAAA  ASV AFGSPSAVKTWA R GV                     GALAACIGETSARACREAGWAES IFYP KPGMEGWA+A+  A+A  +T
Sbjct:   40 FGRSPEWHSGIIGRGETVGHARPSTARGC------------ASRGA-----------EVALTREAGKNGKLAKLLTDAGISSVEVPCIAHQDGPDLPLLPAALADPGLAYVVVTSPEAAKVFLAGWAKAGVPGVPVPVACVGKATGDALRAGGVSPVFTPSKATGETLAAEIPLPPSAPADDTXXXXXXXXXXXXXXXXXXXXXXXXXXXGPRVLYPASAKAQNTLESGLRARGFEVRRLNTYDTVPATWDESAEAAAAGASVAAFGSPSAVKTWAARMGVVAAGVXXXXXXXXXXXXXXXXGALAACIGETSARACREAGWAESAIFYPEKPGMEGWAKAVGQALAAVET 367          
BLAST of mRNA_F-serratus_M_contig130.2257.1 vs. uniprot
Match: A0A835YHW0_9STRA (Uroporphyrinogen-III synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHW0_9STRA)

HSP 1 Score: 242 bits (617), Expect = 6.050e-75
Identity = 146/277 (52.71%), Postives = 175/277 (63.18%), Query Frame = 3
Query:  210 CSGGSGLSAATMSAQEGAPTIRTKSADMAEVALTREAGKNKKLASRLEEAGISCVEIPCIRHQDGPDLPLLPTALEDRDLAYVVITSPEAAKVFLSGWEGAGQPAVPVACVGKATSETLEKSGIKSVFTPSKATGETLAAELPIPDEYA-GMERRPRVLYPASARAQMTLESGLVARGFHVQRLNTYDTVPAEWDASAEAAAMAASVVAFGSPSAVKTWAVRAGVARETTRTGALAACIGETSARACREAGWAESTIFYPAKPGMEGWARAILDAVA 1037
            C+  SG +A  MSA     T RT       VALTREAG N KL + L   GI+CVE+PCI   DGPD   LP  L      YV++TSPE+AKVFL  W+ A +P V VACVG AT + L   G++  FTPS+A GE LAAE+P+P   A G    PRVLYPAS RA  T++ GL ARGFHV RLNTYDT  A W  +  + A  A+V AFGSPSAVK W    GV        A AACIG TSA+A + AGWA+  IF+P KPGM GWA+A+ +A+A
Sbjct:   16 CAAWSGGNAWVMSA---GGTSRT-------VALTREAGNNGKLEALLVAKGINCVEVPCIAFTDGPDSAQLPQHLASGAYDYVIVTSPESAKVFLQAWDAAERPNVSVACVGTATGDALRARGLEPAFTPSRAYGEDLAAEIPLPPSAAVGEGGAPRVLYPASTRAPGTVQEGLEARGFHVVRLNTYDTGAAAWSDADLSNAARAAVAAFGSPSAVKAWVSHMGVEA------AAAACIGVTSAKAAKAAGWADDRIFWPEKPGMPGWAQAVEEALA 276          
BLAST of mRNA_F-serratus_M_contig130.2257.1 vs. uniprot
Match: A0A7S0HHZ2_9CRYP (Uroporphyrinogen-III synthase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HHZ2_9CRYP)

HSP 1 Score: 228 bits (581), Expect = 6.350e-69
Identity = 131/245 (53.47%), Postives = 161/245 (65.71%), Query Frame = 3
Query:  300 VALTREAGKNKKLASRLEEAGISCVEIPCIRHQDGPDLPLLPTALEDRDLAYVVITSPEAAKVFLSGWEGAGQPAVPVACVGKATSETLEKSGIKSVFTPSKATGETLAAELPIPDEYAGMERRPRVLYPASARAQMTLESGLVARGFHVQRLNTYDTVPAEWDASAEAAAMAASVVAFGSPSAVKTWAVRAGVARETTRTGALAACIGETSARACREAGWAESTIFYPAKPGMEGWARAILDAV 1034
            VALTRE GKN KL   L E GI  VE+PCI  + G D   LP AL++ +  YVV+TSPEAA VFL  W  AG+P++PVACVG  T + L++ GI+ VF PSKATG+TLA ELP      G  R  RVLYPASA+A+  ++ GL ARGF V RLNTYDTV A W         +A+V+A  SPSAVKTWA R G  +        AACIGETSA AC+E G+    +F+P  PG+ GWA+A+ DA+
Sbjct:   88 VALTRELGKNSKLEKVLSEKGIRTVELPCIAFEAGTDAETLPKALQE-EWEYVVVTSPEAASVFLDAWREAGEPSLPVACVGAGTKQALQEGGIEPVFMPSKATGKTLADELP------GPRRSGRVLYPASAKARTEVQGGLTARGFSVTRLNTYDTVSATWSDKELQMGASAAVIALASPSAVKTWAERLGTKQ-------YAACIGETSAAACKELGFEH--VFWPESPGILGWAQAVHDAL 316          
BLAST of mRNA_F-serratus_M_contig130.2257.1 vs. uniprot
Match: L1JFY6_GUITC (Uroporphyrinogen-III synthase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JFY6_GUITC)

HSP 1 Score: 224 bits (571), Expect = 2.850e-68
Identity = 131/245 (53.47%), Postives = 161/245 (65.71%), Query Frame = 3
Query:  300 VALTREAGKNKKLASRLEEAGISCVEIPCIRHQDGPDLPLLPTALEDRDLAYVVITSPEAAKVFLSGWEGAGQPAVPVACVGKATSETLEKSGIKSVFTPSKATGETLAAELPIPDEYAGMERRPRVLYPASARAQMTLESGLVARGFHVQRLNTYDTVPAEWDASAEAAAMAASVVAFGSPSAVKTWAVRAGVARETTRTGALAACIGETSARACREAGWAESTIFYPAKPGMEGWARAILDAV 1034
            VALTRE GKN KL   L E G+  VE+PCI  + G D   LP+AL++ D  YVV+TSPEAA VFL  W  A QP++ VACVG  T + L++ GI+ VF PSKATG+TLA ELP      G +   RVLYPASA+A+  ++ GL ARGF V RLNTYDTV A W       A +A+VVA  SPSAVKTWA R G  +        AACIGETSA AC+E G+    +F+P  PG+ GWA+A+ DA+
Sbjct:   24 VALTRELGKNLKLEKALSEKGVRTVELPCIAFEAGIDSDSLPSALKE-DWEYVVVTSPEAASVFLDAWRLASQPSLQVACVGTGTKQALQEGGIEPVFMPSKATGKTLADELP------GPQGNGRVLYPASAKARTEVQGGLTARGFTVTRLNTYDTVSATWSEQELQMAASAAVVALASPSAVKTWAERLGTKQ-------YAACIGETSASACKELGFEH--VFWPESPGIPGWAQAVHDAL 252          
BLAST of mRNA_F-serratus_M_contig130.2257.1 vs. uniprot
Match: A0A1Z5JYL0_FISSO (Uroporphyrinogen-III synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JYL0_FISSO)

HSP 1 Score: 220 bits (560), Expect = 3.420e-66
Identity = 124/251 (49.40%), Postives = 150/251 (59.76%), Query Frame = 3
Query:  303 ALTREAGKNKKLASRLEEAGISCVEIPCIRHQDGPDLPLLPTALEDRDLAYVVITSPEAAKVFLSGWEGAGQPAVP-VACVGKATSETLEKSGIKSVFTPSKATGETLAAELPIPDEYAGMERRPRVLYPASARAQMTLESGLVARGFHVQRLNTYDTVPAEWDASAEAAAMAASVVAFGSPSAVKTWAVRAGVARETTRTGALAACIGETSARACREAGWAESTIFYPAKPGMEGWARAILDAVAVAKTS 1052
            A TRE GKN++L   +    +  VE+PCI H DGPD   L   L++    YV ITSPEAA+V  S W+    P  P V  VGKAT + L+ +GI   F PSKAT E L  ELP+P +    +++P+VLYPAS RAQ TL+ GL  RGF V RLNTYDTV A W+      A    +  F SPSAVK W +             LAACIGETSA+ACRE GW E  IFYP KPGMEGW  A+ +A A   T+
Sbjct:   50 AATREQGKNEQLMKGIRGIHLHPVELPCIAHADGPDFSSLQETLQNNHWDYVTITSPEAARVLSSAWQHCTWPTPPAVVAVGKATEDALQAAGIAVAFCPSKATAEVLVQELPLPSQ---QQQQPKVLYPASVRAQTTLQDGLTQRGFTVVRLNTYDTVTAHWNEHETVQAAQVQIACFASPSAVKGWLLNT-----ENNNAVLAACIGETSAKACRERGWDEEHIFYPEKPGMEGWVNAVAEAAASLATT 292          
BLAST of mRNA_F-serratus_M_contig130.2257.1 vs. uniprot
Match: A0A7S4JXA4_9STRA (Uroporphyrinogen-III synthase n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JXA4_9STRA)

HSP 1 Score: 220 bits (561), Expect = 5.420e-66
Identity = 127/253 (50.20%), Postives = 152/253 (60.08%), Query Frame = 3
Query:  300 VALTREAGKNKKLASRL-------EEAGISCVEIPCIRHQDGPDLPLLPTALEDRDLAYVVITSPEAAKVFLSGWEGAGQPAV-PVACVGKATSETLEKSGIKSVFTPSKATGETLAAELPIPDEYAGMERRPRVLYPASARAQMTLESGLVARGFHVQRLNTYDTVPAEWDASAEAAAMAASVVAFGSPSAVKTWAVRAGVARETTRTGALAACIGETSARACREAGWAESTIFYPAKPGMEGWARAILDAV 1034
            VALTRE GKN KL   L       +   +   EIPCI H DG D   L   L++R   YV +TSPEAA+V  S WEGAG+P++  +A VGKAT E L   GI+  F PSKAT +TL  ELP  D+     R   +LYPASA+A+ TL++GL  RGF V RL+TYDTVPA W       A  A V  F SPSAV  W    G   E       AACIGETSA+ CR+ GW E  I+YP KPG+EGWA A+ DA+
Sbjct:   62 VALTREDGKNSKLLRALLSHPRIGDAIPVDIEEIPCIEHADGDDYDRLGPTLKERSFDYVAVTSPEAARVLASAWEGAGRPSMGKIAAVGKATGEALIALGIEVDFVPSKATAKTLVEELPPSDDATAEGRPTTLLYPASAKARPTLQNGLEGRGFDVTRLDTYDTVPASWSEDRTDLAREAGVACFASPSAVNAWVENLGGEGEGCSGDVAAACIGETSAQGCRDMGWDEGDIYYPEKPGVEGWANAVADAL 314          
BLAST of mRNA_F-serratus_M_contig130.2257.1 vs. uniprot
Match: A0A1Z5JNA0_FISSO (Uroporphyrinogen-III synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JNA0_FISSO)

HSP 1 Score: 216 bits (551), Expect = 7.650e-65
Identity = 126/253 (49.80%), Postives = 149/253 (58.89%), Query Frame = 3
Query:  303 ALTREAGKNKKLASRLEEAGISCVEIPCIRHQDGPDLPLLPTALEDRDLAYVVITSPEAAKVFLSGWEGAGQPAVP---VACVGKATSETLEKSGIKSVFTPSKATGETLAAELPIPDEYAGMERRPRVLYPASARAQMTLESGLVARGFHVQRLNTYDTVPAEWDASAEAAAMAASVVAFGSPSAVKTWAVRAGVARETTRTGALAACIGETSARACREAGWAESTIFYPAKPGMEGWARAILDAVAVAKTS 1052
            A TRE GKN++L   +    ++ VE+PCI H DGPD   L   LE     YV ITSPEAA+V  S W+       P   V  VGKAT + L+ SGI   F PSKAT E L  ELP+P       ++PRVLYPAS RAQ TL+ GL  RGF V RLNTYDTV A+W+      A    +  F SPSAVK W +      +      LAACIGETSA+ACRE GW E  IFYP KPGMEGW  A+ +A A   T+
Sbjct:   50 AATREQGKNEQLMKGIRAIHLNPVELPCIAHADGPDFSSLQETLETNPWDYVTITSPEAARVLSSAWQHCTWQTTPPPAVVAVGKATEDALQASGITVTFCPSKATAEVLVQELPLPSS-----QQPRVLYPASVRAQTTLQDGLTQRGFTVVRLNTYDTVTAQWNEHETNMAAQVQIACFASPSAVKGWLLNTENNHQV-----LAACIGETSAKACRERGWNEEHIFYPDKPGMEGWVDAVAEAAASLATT 292          
BLAST of mRNA_F-serratus_M_contig130.2257.1 vs. uniprot
Match: B8BVT8_THAPS (Uroporphyrinogen-III synthase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVT8_THAPS)

HSP 1 Score: 213 bits (543), Expect = 3.270e-63
Identity = 129/258 (50.00%), Postives = 155/258 (60.08%), Query Frame = 3
Query:  300 VALTREAGKNKKLASRL----------EEAGISCV--EIPCIRHQDGPDLPLLPTALEDRDLAYVVITSPEAAKVFLSGWEGAGQPAV-PVACVGKATSETLEKSGIKSVFTPSKATGETLAAELPIPDEYAGMERRPRVLYPASARAQMTLESGLVARGFHVQRLNTYDTVPAEWDASAEAAAMAASVVAFGSPSAVKTWAVRAGVARETTRTGALAACIGETSARACREAGWAESTIFYPAKPGMEGWARAILDAV 1034
            VALTRE GKN KL   L          + +G++    EIPCI H DGPD   L   L      YV ITSPEAAKV ++ W  AG+P +  VA VGKAT E+L++ GI+  F PSKAT  TL  ELP+ D      R   + YPAS +A  TL++GL  RGF V RLNTYDTVPA WD      A +A+V  F SPSAVK W        +  R  A AACIGETSA ACR+  W ES IFYP KPG++GWA ++ DA+
Sbjct:   67 VALTREEGKNDKLRKALLSNEHIQQLSQSSGVAVDIHEIPCIEHADGPDTDKLVPTLASTQFDYVAITSPEAAKVLVNAWIEAGRPQLGKVAAVGKATQESLKEFGIEVAFVPSKATAATLVKELPLSDAATKEGRSSTLFYPASNKAADTLQNGLEERGFDVMRLNTYDTVPASWDEEQTLLAQSANVACFASPSAVKAWLKNTDGMNKPAR--AKAACIGETSAEACRKNQWDESDIFYPEKPGVDGWAVSVADAL 322          
BLAST of mRNA_F-serratus_M_contig130.2257.1 vs. uniprot
Match: A0A7S2PU27_9STRA (Uroporphyrinogen-III synthase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PU27_9STRA)

HSP 1 Score: 213 bits (542), Expect = 4.120e-63
Identity = 129/259 (49.81%), Postives = 155/259 (59.85%), Query Frame = 3
Query:  300 VALTREAGKNKKLASRLEE-------------AGISCVEIPCIRHQDGPDLPLLPTALEDRDLAYVVITSPEAAKVFLSGWEGAGQPAV-PVACVGKATSETLEKSGIKSVFTPSKATGETLAAELPIPDEYAGMERRPRVLYPASARAQMTLESGLVARGFHVQRLNTYDTVPAEWDASAEAAAMAASVVAFGSPSAVKTWAVRAGVARETTRTGALAACIGETSARACREAGWAESTIFYPAKPGMEGWARAILDAV 1034
            +ALTRE GKN KL   L+              + +   EIPCI H DGPD  +L   L   D  YV ITSPEAAKVF + W   G+P V  VA VGKAT E L+  GI   F PSKAT  TL  ELP  +E     R   +LYPASA+AQ TL++GL  RGF V RLNTYDTV A W    E+ A + +V  F SPSAVK W V+     +  R  ALAACIGETS  AC++ GW E  IFYP KPG++GWA ++ +A+
Sbjct:   63 IALTREEGKNGKLNKALQSNSNIKQIISSSSGSAMEVNEIPCIAHADGPDSDILGKTLSSSDFDYVAITSPEAAKVFATAWIDEGRPKVGSVAAVGKATQEALKAYGIDVAFVPSKATAATLVKELPTLEEATNEGRSTSLLYPASAKAQDTLQNGLEERGFIVTRLNTYDTVTATWTPEEESLAKSTTVACFASPSAVKAW-VKNTAQLDCPR--ALAACIGETSFAACKKNGWKEEDIFYPEKPGIDGWAESVANAL 318          
BLAST of mRNA_F-serratus_M_contig130.2257.1 vs. uniprot
Match: A0A7S4ATH7_9STRA (Uroporphyrinogen-III synthase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ATH7_9STRA)

HSP 1 Score: 206 bits (525), Expect = 1.070e-60
Identity = 124/257 (48.25%), Postives = 150/257 (58.37%), Query Frame = 3
Query:  300 VALTREAGKNKKLASRLEEAG-----ISCVEIPCIRHQDGPDLPLLPTALEDRDLAYVVITSPEAAKVFLSGWEGAGQPAVPVACVGKATSETLEKSGIKSVFTPSKATGETLAAELPIPDEYAGMERRPRVLYPASARAQMTLESGLVARGFHVQRLNTYDTVPAEWDASAEAAAMAASVVAFGSPSAVKTWAVRAGVARETTRTGALAACIGETSARACREAGWAESTIFYPAKPGMEGWARAILDAVAVAKTSS 1055
            + LTRE GKN+KL  ++EE       I  +E+PCI H  GPD   L + L      +V ITSPEAA +  S W+      +PV  VGKAT   L+ S I   F PSKAT +TLA EL    E     ++  VLYPASA+A+ TLE+ L+ARGF V+RLNTYDTV A W    + ++    V  F SPSAVK W    G       TG LAACIGETSA AC E GW E+ IF+P  PG+EGW  AI  A   AK SS
Sbjct:   66 ITLTREDGKNEKLIKKMEENSQLMEEIDVLEMPCIEHAVGPDYEQLSSTLLSERWDFVAITSPEAANILASAWDAVRDNPLPVVAVGKATENRLKDSEISVAFVPSKATAKTLAKEL----ESVHETKKTSVLYPASAKAKKTLENDLMARGFAVKRLNTYDTVTATWTDEQKESSNRVLVACFASPSAVKGWLKNTGG-----NTGVLAACIGETSASACEELGWEENQIFFPESPGLEGWVEAIQKATEFAKKSS 313          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig130.2257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS41_ECTSI2.880e-10556.41Uroporphyrinogen-III synthase n=2 Tax=Ectocarpus T... [more]
A0A835YHW0_9STRA6.050e-7552.71Uroporphyrinogen-III synthase n=1 Tax=Tribonema mi... [more]
A0A7S0HHZ2_9CRYP6.350e-6953.47Uroporphyrinogen-III synthase n=1 Tax=Hanusia phi ... [more]
L1JFY6_GUITC2.850e-6853.47Uroporphyrinogen-III synthase n=2 Tax=Guillardia t... [more]
A0A1Z5JYL0_FISSO3.420e-6649.40Uroporphyrinogen-III synthase n=1 Tax=Fistulifera ... [more]
A0A7S4JXA4_9STRA5.420e-6650.20Uroporphyrinogen-III synthase n=3 Tax=Odontella au... [more]
A0A1Z5JNA0_FISSO7.650e-6549.80Uroporphyrinogen-III synthase n=1 Tax=Fistulifera ... [more]
B8BVT8_THAPS3.270e-6350.00Uroporphyrinogen-III synthase n=1 Tax=Thalassiosir... [more]
A0A7S2PU27_9STRA4.120e-6349.81Uroporphyrinogen-III synthase n=1 Tax=Skeletonema ... [more]
A0A7S4ATH7_9STRA1.070e-6048.25Uroporphyrinogen-III synthase n=1 Tax=Pseudo-nitzs... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig130contigF-serratus_M_contig130:606060..607713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score329.7
Seed ortholog evalue1.6e-87
Seed eggNOG ortholog2880.D8LS41
Preferred nameHEMD
KEGG rclassRC01861
KEGG koko:K01719
KEGG ReactionR03165
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004852,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006725,GO:0006778,GO:0006779,GO:0006780,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0033013,GO:0033014,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046502,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.uroporphyrinogen III biosynthetic process
EggNOG OGs2QST9@2759,COG1587@1
Ec32 ortholog descriptionuroporphyrinogen synthase, putative chloroplast precursor
Ec32 orthologEc-12_004890.1
EC4.2.1.75
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons4
Model size1070
Cds size1047
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig130.2257.1prot_F-serratus_M_contig130.2257.1Fucus serratus malepolypeptideF-serratus_M_contig130 606060..607690 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929256.2835524-CDS-F-serratus_M_contig130:606059..6062371622929256.2835524-CDS-F-serratus_M_contig130:606059..606237Fucus serratus maleCDSF-serratus_M_contig130 606060..606237 -
1690962771.4692702-CDS-F-serratus_M_contig130:606059..6062371690962771.4692702-CDS-F-serratus_M_contig130:606059..606237Fucus serratus maleCDSF-serratus_M_contig130 606060..606237 -
1622929256.295128-CDS-F-serratus_M_contig130:606282..6067971622929256.295128-CDS-F-serratus_M_contig130:606282..606797Fucus serratus maleCDSF-serratus_M_contig130 606283..606797 -
1690962771.4827225-CDS-F-serratus_M_contig130:606282..6067971690962771.4827225-CDS-F-serratus_M_contig130:606282..606797Fucus serratus maleCDSF-serratus_M_contig130 606283..606797 -
1622929256.3092692-CDS-F-serratus_M_contig130:606978..6070971622929256.3092692-CDS-F-serratus_M_contig130:606978..607097Fucus serratus maleCDSF-serratus_M_contig130 606979..607097 -
1690962771.494913-CDS-F-serratus_M_contig130:606978..6070971690962771.494913-CDS-F-serratus_M_contig130:606978..607097Fucus serratus maleCDSF-serratus_M_contig130 606979..607097 -
1622929256.322791-CDS-F-serratus_M_contig130:607455..6076901622929256.322791-CDS-F-serratus_M_contig130:607455..607690Fucus serratus maleCDSF-serratus_M_contig130 607456..607690 -
1690962771.5030084-CDS-F-serratus_M_contig130:607455..6076901690962771.5030084-CDS-F-serratus_M_contig130:607455..607690Fucus serratus maleCDSF-serratus_M_contig130 607456..607690 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929256.3384192-UTR-F-serratus_M_contig130:607690..6077131622929256.3384192-UTR-F-serratus_M_contig130:607690..607713Fucus serratus maleUTRF-serratus_M_contig130 607691..607713 -
1690962771.5109973-UTR-F-serratus_M_contig130:607690..6077131690962771.5109973-UTR-F-serratus_M_contig130:607690..607713Fucus serratus maleUTRF-serratus_M_contig130 607691..607713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig130.2257.1

>prot_F-serratus_M_contig130.2257.1 ID=prot_F-serratus_M_contig130.2257.1|Name=mRNA_F-serratus_M_contig130.2257.1|organism=Fucus serratus male|type=polypeptide|length=349bp
MNNPKLMRHIPSVRLLRTARVIALTVATFDLFLLSAGFRVGPFWHVVGRR
QLGCVDPPLVRGCSGGSGLSAATMSAQEGAPTIRTKSADMAEVALTREAG
KNKKLASRLEEAGISCVEIPCIRHQDGPDLPLLPTALEDRDLAYVVITSP
EAAKVFLSGWEGAGQPAVPVACVGKATSETLEKSGIKSVFTPSKATGETL
AAELPIPDEYAGMERRPRVLYPASARAQMTLESGLVARGFHVQRLNTYDT
VPAEWDASAEAAAMAASVVAFGSPSAVKTWAVRAGVARETTRTGALAACI
GETSARACREAGWAESTIFYPAKPGMEGWARAILDAVAVAKTSSGAVV*
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mRNA from alignment at F-serratus_M_contig130:606060..607713-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig130.2257.1 ID=mRNA_F-serratus_M_contig130.2257.1|Name=mRNA_F-serratus_M_contig130.2257.1|organism=Fucus serratus male|type=mRNA|length=1654bp|location=Sequence derived from alignment at F-serratus_M_contig130:606060..607713- (Fucus serratus male)
TGTATCTTCTGTACGTAGACAACATGAACAACCCAAAACTAATGCGCCAC ATTCCGAGCGTCCGGCTTCTCCGCACAGCACGAGTGATAGCATTGACCGT AGCTACGTTTGATCTGTTTCTACTCTCTGCCGGATTCCGTGTTGGCCCTT TTTGGCACGTAGTGGGAAGACGGCAGCTGGGCTGCGTTGATCCCCCTTTG GTTCGAGGATGCAGCGGCGGATCGGGCCTCTCCGCGGCCACAATGAGCGC TCAAGAAGGTAATCTTCGTAACCGTACCATCGTTGGAATTGTTCTTAATA TTTTGTCAGAAAAAAAAGACGCTCTCGTCTCTATCACACACGAATGCTTG CTTGCGAGTTCTCCACAGTTTACCTTGTTTTTTTAAAGAAAAATCAGAAC GCGCCTATACCTTCCGAGTCTGGATTCTTGGCTGCAGGCCTGCACTCGGC TACGCAACGAAACCGCCTGTTCTGTTCGCCTGAAGTAATAAGGCTGAGTA AAAAAGATCCCGGTGCTCGAAAGTGTGCTCATTTGTGCACGTGTCCCATG GACCATCACCGTCTTGCGTATGCTCTCTGTTTCGCCATTCTCAACAACAA CTGCTGGCCGGAAAAGGAGCGCCCACGATACGCACGAAATCGGCTGATAT GGCTGAGGTTGCTCTAACCAGAGAGGCGGGGAAGAACAAAAAGCTCGCGT CGCGTTTAGAAGAAGCAGGCATTTCTTGCGTCGAGGTGGGCAAGCGCTTA TCCCGTCAGCATAATCGATGCCTGGCTTCACCCAATTTGAAATACCTAGC GCACTCCCGCAGTAGAACTTCGTAGTAATCCATTGTTCTCTTCTCGCTCG AGGTAAGAAACATAATCTTGACGTCGCCTGCCTGTAATGCGTACCCGTTG CAATGCCTATCTCAAGATACCTTGCATCAGGCACCAGGATGGACCAGATC TCCCTCTTTTGCCGACTGCCTTGGAGGACAGGGATCTCGCGTACGTTGTC ATCACCTCACCGGAAGCGGCCAAGGTATTCCTCTCTGGATGGGAGGGAGC CGGGCAGCCCGCGGTCCCCGTGGCCTGCGTCGGAAAGGCCACGAGCGAAA CCCTGGAGAAGAGTGGTATTAAATCCGTCTTCACTCCGTCGAAAGCCACA GGCGAAACCCTGGCGGCTGAACTACCGATCCCCGACGAATACGCGGGCAT GGAACGACGCCCCCGTGTGCTGTATCCGGCCTCCGCCAGGGCACAAATGA CGCTGGAGTCCGGACTGGTGGCAAGAGGGTTTCACGTGCAGAGGCTGAAT ACGTACGACACCGTGCCGGCGGAGTGGGACGCCAGTGCGGAAGCAGCGGC CATGGCCGCGTCGGTGGTGGCGTTCGGGAGCCCCAGCGCTGTAAAGACAT GGGCTGTCCGGGCGGGGGTCGCGCGAGAAACGTTTTTTGCGAGGAAAGAA GGTGCAAGGGGCCCGGGAGAAGGAAGAACTCGGACAGGCGCGCTGGCCGC GTGCATCGGGGAGACTAGCGCACGGGCTTGTCGAGAGGCGGGGTGGGCGG AGTCAACGATATTTTACCCCGCGAAGCCCGGGATGGAAGGCTGGGCGCGG GCGATCTTGGATGCGGTGGCGGTGGCGAAGACCTCCTCTGGAGCTGTCGT TTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig130:606060..607713-

>mRNA_F-serratus_M_contig130.2257.1 ID=mRNA_F-serratus_M_contig130.2257.1|Name=mRNA_F-serratus_M_contig130.2257.1|organism=Fucus serratus male|type=CDS|length=2094bp|location=Sequence derived from alignment at F-serratus_M_contig130:606060..607713- (Fucus serratus male)
ATGAACAACCCAAAACTAATGCGCCACATTCCGAGCGTCCGGCTTCTCCG
CACAGCACGAGTGATAGCATTGACCGTAGCTACGTTTGATCTGTTTCTAC
TCTCTGCCGGATTCCGTGTTGGCCCTTTTTGGCACGTAGTGGGAAGACGG
CAGCTGGGCTGCGTTGATCCCCCTTTGGTTCGAGGATGCAGCGGCGGATC
GGGCCTCTCCGCGGCCACAATGAGCGCTCAAGAAGATGAACAACCCAAAA
CTAATGCGCCACATTCCGAGCGTCCGGCTTCTCCGCACAGCACGAGTGAT
AGCATTGACCGTAGCTACGTTTGATCTGTTTCTACTCTCTGCCGGATTCC
GTGTTGGCCCTTTTTGGCACGTAGTGGGAAGACGGCAGCTGGGCTGCGTT
GATCCCCCTTTGGTTCGAGGATGCAGCGGCGGATCGGGCCTCTCCGCGGC
CACAATGAGCGCTCAAGAAGGAGCGCCCACGATACGCACGAAATCGGCTG
ATATGGCTGAGGTTGCTCTAACCAGAGAGGCGGGGAAGAACAAAAAGCTC
GCGTCGCGTTTAGAAGAAGCAGGCATTTCTTGCGTCGAGGAGCGCCCACG
ATACGCACGAAATCGGCTGATATGGCTGAGGTTGCTCTAACCAGAGAGGC
GGGGAAGAACAAAAAGCTCGCGTCGCGTTTAGAAGAAGCAGGCATTTCTT
GCGTCGAGATACCTTGCATCAGGCACCAGGATGGACCAGATCTCCCTCTT
TTGCCGACTGCCTTGGAGGACAGGGATCTCGCGTACGTTGTCATCACCTC
ACCGGAAGCGGCCAAGGTATTCCTCTCTGGATGGGAGGGAGCCGGGCAGC
CCGCGGTCCCCGTGGCCTGCGTCGGAAAGGCCACGAGCGAAACCCTGGAG
AAGAGTGGTATTAAATCCGTCTTCACTCCGTCGAAAGCCACAGGCGAAAC
CCTGGCGGCTGAACTACCGATCCCCGACGAATACGCGGGCATGGAACGAC
GCCCCCGTGTGCTGTATCCGGCCTCCGCCAGGGCACAAATGACGCTGGAG
TCCGGACTGGTGGCAAGAGGGTTTCACGTGCAGAGGCTGAATACGTACGA
CACCGTGCCGGCGGAGTGGGACGCCAGTGCGGAAGCAGCGGCCATGGCCG
CGTCGGTGGTGGCGTTCGGGAGCCCCAGCGCTGTAAAGACATGGGCTGTC
CGGGCGGGGGTCGCGCGAGAAACATACCTTGCATCAGGCACCAGGATGGA
CCAGATCTCCCTCTTTTGCCGACTGCCTTGGAGGACAGGGATCTCGCGTA
CGTTGTCATCACCTCACCGGAAGCGGCCAAGGTATTCCTCTCTGGATGGG
AGGGAGCCGGGCAGCCCGCGGTCCCCGTGGCCTGCGTCGGAAAGGCCACG
AGCGAAACCCTGGAGAAGAGTGGTATTAAATCCGTCTTCACTCCGTCGAA
AGCCACAGGCGAAACCCTGGCGGCTGAACTACCGATCCCCGACGAATACG
CGGGCATGGAACGACGCCCCCGTGTGCTGTATCCGGCCTCCGCCAGGGCA
CAAATGACGCTGGAGTCCGGACTGGTGGCAAGAGGGTTTCACGTGCAGAG
GCTGAATACGTACGACACCGTGCCGGCGGAGTGGGACGCCAGTGCGGAAG
CAGCGGCCATGGCCGCGTCGGTGGTGGCGTTCGGGAGCCCCAGCGCTGTA
AAGACATGGGCTGTCCGGGCGGGGGTCGCGCGAGAAACAACTCGGACAGG
CGCGCTGGCCGCGTGCATCGGGGAGACTAGCGCACGGGCTTGTCGAGAGG
CGGGGTGGGCGGAGTCAACGATATTTTACCCCGCGAAGCCCGGGATGGAA
GGCTGGGCGCGGGCGATCTTGGATGCGGTGGCGGTGGCGAAGACCTCCTC
TGGAGCTGTCGTTTGAAACTCGGACAGGCGCGCTGGCCGCGTGCATCGGG
GAGACTAGCGCACGGGCTTGTCGAGAGGCGGGGTGGGCGGAGTCAACGAT
ATTTTACCCCGCGAAGCCCGGGATGGAAGGCTGGGCGCGGGCGATCTTGG
ATGCGGTGGCGGTGGCGAAGACCTCCTCTGGAGCTGTCGTTTGA
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