prot_F-serratus_M_contig130.2237.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig130.2237.1
Unique Nameprot_F-serratus_M_contig130.2237.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length298
Homology
BLAST of mRNA_F-serratus_M_contig130.2237.1 vs. uniprot
Match: D8LT94_ECTSI (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT94_ECTSI)

HSP 1 Score: 521 bits (1341), Expect = 1.640e-185
Identity = 261/298 (87.58%), Postives = 284/298 (95.30%), Query Frame = 0
Query:    2 TLTPDKFADLHGRLMTILSADTSDVGVNSEALSESFGEQYPLLVDVINSLLMDNRLQLSKGENDTVWYKLVQEEKAKKLVGLTPEQMMIYQVIEKAGNQGIWTRDIKTSTSVNQNTLTKSLKSLENRHLIKTVKSVTSKSKKLYMLYELTPPKAITGGPWYTDQEFDYDFVKHLSNYVLSYVKEQQTPALKDIAAAIKVSGISKIDLSMEEVKLIVNTLVYDGELEEVRGA--RFSRGAGDGPVYKMAPSVEVVNAFTEIPCGTCKVMKHCSEGGVVSPRTCVYLAEWLNMPNSDELF 297
            +L+ +KFA LHGRLMTILSAD+SD GVNSE LSESFGE+YPLLVDVINSLL+DNRLQLSKGENDT+WYKLVQEEKAKKL+GLTPEQMMIYQVIEKAGN+GIWTRDIKT+T+VNQNT+TK+LKSLE RHL+KT KSVTSKSKKLYMLYELTP K ITGGPWYTDQEFDY+FVKHLS+YVLSYVKEQ+TP LKDIAAAIKVSGISKIDLSMEEVKLIV+TLVYDG LEEVRGA  RF+R AGDGPVYKMAP+VEVVNAFTE+PCGTCKVMKHCSE GVVSP+TCVYLAEWLN+PNSDELF
Sbjct:    3 SLSQEKFASLHGRLMTILSADSSDDGVNSEVLSESFGEEYPLLVDVINSLLVDNRLQLSKGENDTMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDAGDGPVYKMAPAVEVVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNLPNSDELF 300          
BLAST of mRNA_F-serratus_M_contig130.2237.1 vs. uniprot
Match: A0A7R9U7U3_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7U3_9STRA)

HSP 1 Score: 271 bits (693), Expect = 5.740e-87
Identity = 134/274 (48.91%), Postives = 189/274 (68.98%), Query Frame = 0
Query:   22 DTSDVGVNSEALSESFGEQYPLLVDVINSLLMDNRLQLSKGENDTVWYKLVQEEKAKKLVGLTPEQMMIYQVIEKAGNQGIWTRDIKTSTSVNQNTLTKSLKSLENRHLIKTVKSVTSKSKKLYMLYELTPPKAITGGPWYTDQEFDYDFVKHLSNYVLSYVKEQQTPALKDIAAAIKVSGISKIDLSMEEVKLIVNTLVYDGELEEVRGARFSR-GAGDGPVYKMAPSVEVVNAFTEIPCGTCKVMKHCSEGGVVSPRTCVYLAEWLNMPNSD 294
            D +D GV+ E L   FG++Y  L DV+N++L   R+ + +  +DT+ YKLV  EKA KL GLT EQ +IYQ I+KAGN+GIWTR I T T+V Q  LTK+LK LE R LIK+VKSVTS+ KKLYML+E  P   ITGG WY++ EFD++FV  +S +V +Y+K+ ++ +L+DIA A++ +G SK+DLS ++V+ IV +L++DG +E V+    ++ G  +GP+Y+  P +      TE PCG C V   C EGGV+SP TCVY+  WL + + D
Sbjct:   30 DENDGGVSDELLQHEFGKEYGKLADVLNTMLEQRRVTILRAHDDTLVYKLVSAEKASKLQGLTREQELIYQEIKKAGNKGIWTRKITTETNVQQQVLTKTLKLLEQRQLIKSVKSVTSRRKKLYMLFEEVPATEITGGAWYSEGEFDHEFVSSMSQFVYTYIKQGESASLQDIAKAVRETGFSKVDLSTDDVQQIVESLIFDGRVERVQNPILTQMGLDNGPLYRSKPKITTPQFVTENPCGICPVANQCCEGGVISPATCVYMNHWLELDSLD 303          
BLAST of mRNA_F-serratus_M_contig130.2237.1 vs. uniprot
Match: A0A067BY85_SAPPC (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BY85_SAPPC)

HSP 1 Score: 243 bits (619), Expect = 4.630e-76
Identity = 121/283 (42.76%), Postives = 191/283 (67.49%), Query Frame = 0
Query:   16 MTILSADTSDVGVNSEALSESFGEQYPLLVDVINSLLMDNRLQ-LSKGENDTVWYKLVQEEKAKKLVGLTPEQMMIYQVIEKAGNQGIWTRDIKTSTSVNQNTLTKSLKSLENRHLIKTVKSVTSKSKKLYMLYELTPPKAITGGPWYTDQEFDYDFVKHLSNYVLSYVKEQQTPALKDIAAAIKVSGISKIDLSMEEVKLIVNTLVYDGELEEVRGARFSRGAGDGPVYKMAPSVEVVNAFTEIPCGTCKVMKHCSEGGVVSPRTCVYLAEWLNMPNSDELF 297
            + +L++ T  +G   + + +SFG+QY  L   IN L+ ++R++ L +G N  V Y+LV +E+++++ GL+ E   +   IEK+GN+G+WTRDIK  T++ + T+ K +++LE+RHL+K VKS++ K+KKLYMLY+L P + ITGGPWY +QEFD+DF+  LS +V  +++ +    L+ I   +  SGI+K+ L  +E+  IVNTL+YD  +EEVR AR + G      YK+   V V +  +E PCG C V + C++G +VSP TCVYL +W+N+  +D+LF
Sbjct:    8 LDLLASSTEPIG--DDVVRKSFGDQYAKLPVCINRLMGESRIKILMQGSN--VLYQLVTKEESERMQGLSGEHRAVLHEIEKSGNKGVWTRDIKMQTNLPEMTIRKIIRTLESRHLVKAVKSISQKNKKLYMLYDLVPSRDITGGPWYNEQEFDHDFIDTLSTFVCQFIRAKGVVTLQQITDKVHESGIAKVSLGPDEMMSIVNTLIYDERIEEVRTARLANGEMRDVSYKICRDVSVFDGLSEAPCGVCPVFEQCADGNIVSPATCVYLTKWMNV--ADDLF 284          
BLAST of mRNA_F-serratus_M_contig130.2237.1 vs. uniprot
Match: A0A1V9ZF30_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZF30_9STRA)

HSP 1 Score: 239 bits (611), Expect = 1.020e-74
Identity = 125/292 (42.81%), Postives = 188/292 (64.38%), Query Frame = 0
Query:   16 MTILSADTSDVGVNSEALSESFGEQYPLLVDVINSLLMDNRLQLSKGENDTVWYKLVQEEKAKKLVGLT----------PEQMMIYQVIEKAGNQGIWTRDIKTSTSVNQNTLTKSLKSLENRHLIKTVKSVTSKSKKLYMLYELTPPKAITGGPWYTDQEFDYDFVKHLSNYVLSYVKEQQTPALKDIAAAIKVSGISKIDLSMEEVKLIVNTLVYDGELEEVRGARFSRGAGDGPVYKMAPSVEVVNAFTEIPCGTCKVMKHCSEGGVVSPRTCVYLAEWLNMPNSDELF 297
            + +L + T  V  N   + +SFGEQY  L   IN L+ ++R+++   +  T+ Y+LV +E+A+++ GL+           E   +   IEKAGN+G+WTRDIK+ T++ + T+ K ++ LE RHL+K VKS++ K+KKLYMLY+L P + ITGGPWY +QEFD+DF+  LSN+V  +++ +    L+ I   +  SGI+K+ L  EE+  IVNTL+YD  +EEVR AR + G      YK+   V V +A +E PCG C V   C++G +VSP TCVYL +W+N+  +D+LF
Sbjct:    8 LDLLGSSTEPVSDN--VIKKSFGEQYAKLPSCINRLVNESRVKILM-QGTTLMYQLVPKEEAERMQGLSYVAVNSNYHWGEHRAVLHEIEKAGNKGVWTRDIKSQTNLAEVTIRKIIRVLETRHLVKAVKSISQKNKKLYMLYDLVPSRDITGGPWYNEQEFDHDFIDTLSNFVCQFIRAKGVVTLQQITDKVHESGIAKVSLGPEEMMSIVNTLIYDERIEEVRTARLANGEMREVSYKICRDVSVFDALSEAPCGICPVFDQCADGNIVSPATCVYLTKWMNV--ADDLF 294          
BLAST of mRNA_F-serratus_M_contig130.2237.1 vs. uniprot
Match: A0A2D4BDY6_PYTIN (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDY6_PYTIN)

HSP 1 Score: 236 bits (601), Expect = 3.500e-73
Identity = 115/257 (44.75%), Postives = 172/257 (66.93%), Query Frame = 0
Query:   38 GEQYPLLVDVINSLLMDNRLQLSKGENDTVWYKLVQEEKAKKLVGLTPEQMMIYQVIEKAGNQGIWTRDIKTSTSVNQNTLTKSLKSLENRHLIKTVKSVTSKSKKLYMLYELTPPKAITGGPWYTDQEFDYDFVKHLSNYVLSYVKEQQTPALKDIAAAIKVSGISKIDLSMEEVKLIVNTLVYDGELEEVRGARFSRGAGDGPVYKMAPSVEVVNAFTEIPCGTCKVMKHCSEGGVVSPRTCVYLAEWLNMPNSD 294
            G +Y  L  VIN+L+ + R++  +     + Y +V  E+A+++ GLT EQ ++ Q IE+AGN+G+WTRDIKT T++ Q  +TK+L+ LE+R L+K+VKS++SK+KKLYML++L P   ITGGPWY +QEFD+ F+  LS +V   +K      LK I   +  SGISK+ L  +E++ I+ TL+YDG +EEVR  R + GA     YK++  +   NA +E PCG C V   C EG V+SPR+C+YL +WL++ + +
Sbjct:   40 GGEYERLPTVINALMGEGRIKXFQ-RGSVLSYGVVGAEEAERIKGLTIEQRLVLQEIERAGNKGVWTRDIKTHTNIPQQIVTKTLRVLESRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLKAITDKVHASGISKVALGPDEIRSIIQTLMYDGRVEEVRAVRLTPGANHETKYKISQEISTFNALSETPCGVCPVFDQCQEGNVISPRSCLYLTKWLDLKDLE 295          
BLAST of mRNA_F-serratus_M_contig130.2237.1 vs. uniprot
Match: A0A024U424_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024U424_9STRA)

HSP 1 Score: 233 bits (593), Expect = 3.760e-72
Identity = 114/279 (40.86%), Postives = 180/279 (64.52%), Query Frame = 0
Query:   12 HGRLMTILSADTSDVGVNSEALSESFGEQYPLLVDVINSLLMDNRLQLSKGENDTVWYKLVQEEKAKKLVGLTPEQMMIYQVIEKAGNQGIWTRDIKTSTSVNQNTLTKSLKSLENRHLIKTVKSVTSKSKKLYMLYELTPPKAITGGPWYTDQEFDYDFVKHLSNYVLSYVKEQQTPALKDIAAAIKVSGISKIDLSMEEVKLIVNTLVYDGELEEVRGARFSRGAGDGPVYKMAPSVEVVNAFTEIPCGTCKVMKHCSEGGVVSPRTCVYLAEWLNM 290
            H +    L   ++D  ++   + +SF  +Y  L  VIN L+ D R+++ + +N  + Y LV +E+A+++ GLT EQ  +   IEKAGN+GIWTRDIK  T++ +  + K+++ LE RHL+K VKS++ K+KKLYML++L P + ITGGPWY +QEFD+DF+  L N+V  +++ +    LK I   +  SGI+K+ L  +E+  I+NTL+YD  +EEVR AR + G      YK++  V   +  ++ PCG C V   C++G ++SP TC+YL +WL++
Sbjct:    3 HAKAFLDLLGSSTDA-ISDAQVRDSFRAEYDKLPGVINELVTDGRIKIFQ-QNGNLMYGLVAKEEAERMRGLTVEQRGVLHEIEKAGNKGIWTRDIKAKTNIPEVIIRKTIRLLETRHLVKAVKSISQKNKKLYMLFDLVPSRDITGGPWYNEQEFDHDFIDTLRNFVCQFIRAKGIVTLKQITDKVHESGIAKVSLGPDEMMSILNTLIYDDRVEEVRAARLASGEWREVSYKVSREVTDFDTLSDTPCGVCPVFDQCADGNIISPATCIYLTKWLDI 279          
BLAST of mRNA_F-serratus_M_contig130.2237.1 vs. uniprot
Match: K3X6G1_GLOUD (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X6G1_GLOUD)

HSP 1 Score: 229 bits (585), Expect = 8.250e-71
Identity = 114/271 (42.07%), Postives = 175/271 (64.58%), Query Frame = 0
Query:   24 SDVGVNSEALSESFGEQYPLLVDVINSLLMDNRLQLSKGENDTVWYKLVQEEKAKKLVGLTPEQMMIYQVIEKAGNQGIWTRDIKTSTSVNQNTLTKSLKSLENRHLIKTVKSVTSKSKKLYMLYELTPPKAITGGPWYTDQEFDYDFVKHLSNYVLSYVKEQQTPALKDIAAAIKVSGISKIDLSMEEVKLIVNTLVYDGELEEVRGARFSRGAGDGPVYKMAPSVEVVNAFTEIPCGTCKVMKHCSEGGVVSPRTCVYLAEWLNMPNSD 294
            +D  V     +E  GE Y  L  V+N L+ + ++++ +  N  + Y ++  E+A+++ GLT EQ ++ Q IE+AGN+GIWTRDIKT T++ Q  +TK+L+ LE R L+K+VKS++SK+KKLYML++L P   ITGGPWY +QEFD+ F+  LS +V   +K   T  L  I   +  SGISK+ L  EE++ I+ TL+YDG +EEVR  R + G      YK++  +   N  +E PCG C V   C EG ++SPR+C+Y+++W+ + + +
Sbjct:   24 TDAEVREYFQAEGQGE-YEKLPSVLNVLMSEGKIKIFQKGN-VLSYGVIGAEEAERIRGLTLEQRLVLQEIERAGNKGIWTRDIKTHTNIPQQIVTKTLRLLETRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGTSTLNAITDKVHASGISKVALGPEEIRSIIQTLMYDGRVEEVRTVRLTPGVSHETKYKVSHDISTFNYLSETPCGVCPVFNQCQEGNIISPRSCLYISKWVELKDLE 292          
BLAST of mRNA_F-serratus_M_contig130.2237.1 vs. uniprot
Match: A0A6G0WWY0_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWY0_9STRA)

HSP 1 Score: 228 bits (581), Expect = 2.500e-70
Identity = 111/279 (39.78%), Postives = 182/279 (65.23%), Query Frame = 0
Query:   12 HGRLMTILSADTSDVGVNSEALSESFGEQYPLLVDVINSLLMDNRLQLSKGENDTVWYKLVQEEKAKKLVGLTPEQMMIYQVIEKAGNQGIWTRDIKTSTSVNQNTLTKSLKSLENRHLIKTVKSVTSKSKKLYMLYELTPPKAITGGPWYTDQEFDYDFVKHLSNYVLSYVKEQQTPALKDIAAAIKVSGISKIDLSMEEVKLIVNTLVYDGELEEVRGARFSRGAGDGPVYKMAPSVEVVNAFTEIPCGTCKVMKHCSEGGVVSPRTCVYLAEWLNM 290
            H ++   L A +SD  ++   + E+F ++Y  L  VIN+L+ + R+++ K   +++ Y LV +E+A+++ GLT EQ+ + + IE +GN+GIWTRDIKT T++ +  + K++K LE R LIK VKS+  K++KLYM ++L P + ITGGPWY +QEFD+ F+  L ++V  ++K +    LK I   +  SGI+++ L  +E+  I+NTL+Y+  +EEVR  R + G      YK++  V   ++ +E PCG C V   C++G ++SP TCVYL +WL++
Sbjct:    3 HAKVFLDLLASSSDA-ISDAKVRETFHDEYAKLPPVINNLMREGRIRIFKQGANSLMYGLVAKEEAERMRGLTAEQIAVLREIEGSGNKGIWTRDIKTKTNIPEVIIRKTIKILETRQLIKAVKSIAQKNRKLYMKFDLDPSRDITGGPWYNEQEFDHGFIDALRDFVCGFIKAKGVVTLKQITDQVHESGITRVSLGPDEMMSILNTLIYEERVEEVRAIRIAHGEVGEVKYKVSKDVSDFDSLSETPCGICPVFDQCADGNIISPATCVYLTKWLDI 280          
BLAST of mRNA_F-serratus_M_contig130.2237.1 vs. uniprot
Match: A0A0W8DBA8_PHYNI (DNA-directed RNA polymerase III subunit RPC6 n=24 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DBA8_PHYNI)

HSP 1 Score: 226 bits (575), Expect = 2.490e-69
Identity = 114/257 (44.36%), Postives = 166/257 (64.59%), Query Frame = 0
Query:   38 GEQYPLLVDVINSLLMDNRLQLSKGENDTVWYKLVQEEKAKKLVGLTPEQMMIYQVIEKAGNQGIWTRDIKTSTSVNQNTLTKSLKSLENRHLIKTVKSVTSKSKKLYMLYELTPPKAITGGPWYTDQEFDYDFVKHLSNYVLSYVKEQQTPALKDIAAAIKVSGISKIDLSMEEVKLIVNTLVYDGELEEVRGARFSRGAGDGPVYKMAPSVEVVNAFTEIPCGTCKVMKHCSEGGVVSPRTCVYLAEWLNMPNSD 294
            G  Y  L DVIN+LL + ++++ K +   + Y +V  E+A+++ GLT EQ ++ Q IE+AGN+GIWTRDIK+ T++ Q  +TK+L+ LE R L+K+VKS++SK+KKLYML++L P   ITGGPWY +QEFD+ F+  LS +V   +K      L  I   +  SGISK+ L  EE++ I+ TL+YDG +EEVR A           YK++  +   N  +E PCG C V   C EG V+SPR+C+Y+ +WL +   D
Sbjct:   41 GGGYEQLPDVINALLTEGKIKIFK-KGSVLSYGIVDAEEAERIRGLTLEQRLVLQEIERAGNKGIWTRDIKSHTNIPQQIVTKTLRLLETRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLNAITDKVHASGISKVALGPEEIRSIIQTLMYDGRVEEVRSASHE------VKYKVSQQITTFNYLSETPCGVCPVFDQCQEGNVISPRSCLYMTKWLGLKELD 290          
BLAST of mRNA_F-serratus_M_contig130.2237.1 vs. uniprot
Match: A0A485KM43_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KM43_9STRA)

HSP 1 Score: 225 bits (574), Expect = 3.310e-69
Identity = 115/285 (40.35%), Postives = 181/285 (63.51%), Query Frame = 0
Query:   12 HGRLMTILSADTSDVGVNSEALSESFGEQYPLLVDVINSLLMDNRLQLSKGENDTVWYKLVQEEKAKKLVGLT------PEQMMIYQVIEKAGNQGIWTRDIKTSTSVNQNTLTKSLKSLENRHLIKTVKSVTSKSKKLYMLYELTPPKAITGGPWYTDQEFDYDFVKHLSNYVLSYVKEQQTPALKDIAAAIKVSGISKIDLSMEEVKLIVNTLVYDGELEEVRGARFSRGAGDGPVYKMAPSVEVVNAFTEIPCGTCKVMKHCSEGGVVSPRTCVYLAEWLNM 290
            H +    L + +SD  ++   + E+F ++Y  L  VIN L+ D R+++ +  N+ + Y LV +E+A+++ GLT       EQ  +   IEK+GN GIWTRDIKT T++ +  + K+++ LE R L+K VKS++ K+KKLYM+++L P + ITGGPWY +QEFD+DF+  L N+V  ++K +    L+ I   +  SGI+K+ L  +E+  I+NTL+YD  +EEVR AR + G      YK++  V   +  +E PCG C V   C++G V+SP TC+YL +WL++
Sbjct:    3 HAKAFLDLLSSSSDA-ISDAQVREAFRDEYGKLPAVINELMGDGRIKIFQQGNNLM-YGLVAKEEAERMRGLTYDSGTCVEQRAVLHEIEKSGNTGIWTRDIKTKTNIPEVIIRKTIRLLETRQLVKAVKSISQKNKKLYMMFDLVPSRDITGGPWYNEQEFDHDFIDTLRNFVCQFIKAKGIVTLQQITDKVHESGIAKVSLGPDEMMSILNTLIYDERVEEVRAARLASGEWRDVSYKVSKEVSDFDTLSETPCGVCPVFDQCADGNVISPATCIYLTKWLDI 285          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig130.2237.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT94_ECTSI1.640e-18587.58DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A7R9U7U3_9STRA5.740e-8748.91DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A067BY85_SAPPC4.630e-7642.76DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A1V9ZF30_9STRA1.020e-7442.81DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A2D4BDY6_PYTIN3.500e-7344.75DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A024U424_9STRA3.760e-7240.86DNA-directed RNA polymerase III subunit RPC6 n=8 T... [more]
K3X6G1_GLOUD8.250e-7142.07DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A6G0WWY0_9STRA2.500e-7039.78DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A0W8DBA8_PHYNI2.490e-6944.36DNA-directed RNA polymerase III subunit RPC6 n=24 ... [more]
A0A485KM43_9STRA3.310e-6940.35DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007832RNA polymerase Rpc34PIRSFPIRSF028763RNAP3_C34/C39coord: 7..292
e-value: 3.9E-71
score: 237.7
IPR007832RNA polymerase Rpc34PFAMPF05158RNA_pol_Rpc34coord: 13..192
e-value: 6.6E-52
score: 177.0
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 57..142
e-value: 3.5E-28
score: 99.1
IPR016049RNA polymerase Rpc34-likePANTHERPTHR12780RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATEDcoord: 38..288
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 74..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig130contigF-serratus_M_contig130:212989..227181 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig130.2237.1mRNA_F-serratus_M_contig130.2237.1Fucus serratus malemRNAF-serratus_M_contig130 212904..228571 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig130.2237.1 ID=prot_F-serratus_M_contig130.2237.1|Name=mRNA_F-serratus_M_contig130.2237.1|organism=Fucus serratus male|type=polypeptide|length=298bp
MTLTPDKFADLHGRLMTILSADTSDVGVNSEALSESFGEQYPLLVDVINS
LLMDNRLQLSKGENDTVWYKLVQEEKAKKLVGLTPEQMMIYQVIEKAGNQ
GIWTRDIKTSTSVNQNTLTKSLKSLENRHLIKTVKSVTSKSKKLYMLYEL
TPPKAITGGPWYTDQEFDYDFVKHLSNYVLSYVKEQQTPALKDIAAAIKV
SGISKIDLSMEEVKLIVNTLVYDGELEEVRGARFSRGAGDGPVYKMAPSV
EVVNAFTEIPCGTCKVMKHCSEGGVVSPRTCVYLAEWLNMPNSDELF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007832RNA_pol_Rpc34
IPR036388WH-like_DNA-bd_sf
IPR016049RNA_pol_Rpc34-like
IPR036390WH_DNA-bd_sf