mRNA_F-serratus_M_contig130.2238.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig130.2238.1
Unique NamemRNA_F-serratus_M_contig130.2238.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig130.2238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig130contigF-serratus_M_contig130:231000..231772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size557
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929249.3565392-CDS-F-serratus_M_contig130:230999..2311331622929249.3565392-CDS-F-serratus_M_contig130:230999..231133Fucus serratus maleCDSF-serratus_M_contig130 231000..231133 -
1690962768.631692-CDS-F-serratus_M_contig130:230999..2311331690962768.631692-CDS-F-serratus_M_contig130:230999..231133Fucus serratus maleCDSF-serratus_M_contig130 231000..231133 -
1622929249.3729563-CDS-F-serratus_M_contig130:231351..2317721622929249.3729563-CDS-F-serratus_M_contig130:231351..231772Fucus serratus maleCDSF-serratus_M_contig130 231352..231772 -
1690962768.646764-CDS-F-serratus_M_contig130:231351..2317721690962768.646764-CDS-F-serratus_M_contig130:231351..231772Fucus serratus maleCDSF-serratus_M_contig130 231352..231772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig130.2238.1prot_F-serratus_M_contig130.2238.1Fucus serratus malepolypeptideF-serratus_M_contig130 231000..231772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig130.2238.1

>prot_F-serratus_M_contig130.2238.1 ID=prot_F-serratus_M_contig130.2238.1|Name=mRNA_F-serratus_M_contig130.2238.1|organism=Fucus serratus male|type=polypeptide|length=185bp
SGQGRGTDSSRVGAAIITTRAVASGDGFTRMSPPESKEAVQQRLVTSQMV
QMKKQQQQLERWELLLGRLIASVRRSGSGWGDAAAATGLTTNPTACWRES
RNSHEKQATDEEIRARHRRRRQQQQQQQRQWLSFSSALPASIPLAPQMMA
ADRARRDLQCGGRGQGGNSSPPIPTSPVFVRRASA
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mRNA from alignment at F-serratus_M_contig130:231000..231772-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig130.2238.1 ID=mRNA_F-serratus_M_contig130.2238.1|Name=mRNA_F-serratus_M_contig130.2238.1|organism=Fucus serratus male|type=mRNA|length=773bp|location=Sequence derived from alignment at F-serratus_M_contig130:231000..231772- (Fucus serratus male)
TCGGGGCAAGGTAGGGGCACCGATAGCTCGAGGGTGGGTGCCGCGATCAT
CACCACCCGAGCTGTTGCCAGCGGTGACGGTTTCACCAGGATGTCGCCAC
CAGAATCTAAGGAAGCCGTGCAGCAGCGACTGGTCACATCCCAGATGGTA
CAAATGAAGAAGCAGCAGCAGCAGCTCGAACGGTGGGAACTGCTGTTGGG
AAGGTTAATCGCGAGTGTGCGTCGGTCTGGCTCTGGTTGGGGGGATGCGG
CGGCGGCAACAGGCCTTACGACGAATCCGACCGCCTGTTGGCGCGAGAGT
CGCAACTCGCACGAAAAACAAGCTACAGACGAGGAAATCCGAGCCAGACA
TCGCCGCCGGCGGCAACAACAGCAGCAGCAGCAGCGACAGTGGCTCTCTT
TTTCGTCCGCTCTGCCTGCGTGTGAGTGGAAAATTGTCGTGTCCTTCATT
CATATCGACCAAGGCAATCAGCAGTTCAAATTTTGCATCATTCATATATA
GCGTTAAGTTGTTCGACATACTGTATAAAGAGTCCTAGTCTAATCCACGA
CCGAGATACTCCCATCTACCGCCGCTACCGGTTAAGTGTACGTGCGTGTG
CGCTGTCGTCTGCCGCGTGCACCCGATGCGACCTCGCAGCAATACCCCTA
GCACCGCAAATGATGGCCGCCGACCGTGCTAGGCGCGACCTGCAGTGTGG
CGGCCGAGGTCAGGGCGGCAACTCGTCACCCCCCATCCCAACGTCGCCCG
TGTTCGTAAGGCGAGCATCTGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig130:231000..231772-

>mRNA_F-serratus_M_contig130.2238.1 ID=mRNA_F-serratus_M_contig130.2238.1|Name=mRNA_F-serratus_M_contig130.2238.1|organism=Fucus serratus male|type=CDS|length=1110bp|location=Sequence derived from alignment at F-serratus_M_contig130:231000..231772- (Fucus serratus male)
TCGGGGCAAGGTAGGGGCACCGATAGCTCGAGGGTGGGTGCCGCGATCAT
CACCACCCGAGCTGTTGCCAGCGGTGACGGTTTCACCAGGATGTCGCCAC
CAGAATCTAAGGAAGCCGTGCAGCAGCGACTGGTCACATCCCAGATGGTA
CAAATGAAGAAGCAGCAGCAGCAGCTCGAACGGTGGGAACTGCTGTTGGG
AAGGTTAATCGCGAGTGTGCGTCGGTCTGGCTCTGGTTGGGGGGATGCGG
CGGCGGCAACAGGCCTTACGACGAATCCGACCGCCTGTTGGCGCGAGAGT
CGCAACTCGCACGAAAAACAAGCTACAGACGAGGAAATCCGAGCCAGACA
TCGCCGCCGGCGGCAACAACAGCAGCAGCAGCAGCGACAGTGGCTCTCTT
TTTCGTCCGCTCTGCCTGCGTTCGGGGCAAGGTAGGGGCACCGATAGCTC
GAGGGTGGGTGCCGCGATCATCACCACCCGAGCTGTTGCCAGCGGTGACG
GTTTCACCAGGATGTCGCCACCAGAATCTAAGGAAGCCGTGCAGCAGCGA
CTGGTCACATCCCAGATGGTACAAATGAAGAAGCAGCAGCAGCAGCTCGA
ACGGTGGGAACTGCTGTTGGGAAGGTTAATCGCGAGTGTGCGTCGGTCTG
GCTCTGGTTGGGGGGATGCGGCGGCGGCAACAGGCCTTACGACGAATCCG
ACCGCCTGTTGGCGCGAGAGTCGCAACTCGCACGAAAAACAAGCTACAGA
CGAGGAAATCCGAGCCAGACATCGCCGCCGGCGGCAACAACAGCAGCAGC
AGCAGCGACAGTGGCTCTCTTTTTCGTCCGCTCTGCCTGCGTCAATACCC
CTAGCACCGCAAATGATGGCCGCCGACCGTGCTAGGCGCGACCTGCAGTG
TGGCGGCCGAGGTCAGGGCGGCAACTCGTCACCCCCCATCCCAACGTCGC
CCGTGTTCGTAAGGCGAGCATCTGCGCAATACCCCTAGCACCGCAAATGA
TGGCCGCCGACCGTGCTAGGCGCGACCTGCAGTGTGGCGGCCGAGGTCAG
GGCGGCAACTCGTCACCCCCCATCCCAACGTCGCCCGTGTTCGTAAGGCG
AGCATCTGCG
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