mRNA_F-serratus_M_contig13.2218.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig13.2218.1
Unique NamemRNA_F-serratus_M_contig13.2218.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig13.2218.1 vs. uniprot
Match: D7FYX2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYX2_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 8.220e-15
Identity = 115/222 (51.80%), Postives = 128/222 (57.66%), Query Frame = 3 
Query:   81 MADDDEVEKFKRLYEEQRAKVKDLERQNSQLKDVIQQLMEAARQAPA------------------------NRNPAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSNQRTGSAGGGQATVIATRSGEGSVQESRDSSAATGEALVAXXXXXXXXXNKQESTQPPEPDVRDDIVSQMREASMSKDRAKLEAAIKKAEDAGLHFEANQGRRQLSRISG 674
            MA ++E++K+KRLYEEQ+AKVKDLERQN QLKD +Q LME  RQ  +                        +RN A   AXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                           XXXXXXXXX         EPDVR +IV+ MREASMSKD+ KLE AIKKAEDAGLHFEA+QGRRQL RI G
Sbjct:    1 MAAEEELDKYKRLYEEQKAKVKDLERQNLQLKDTVQHLMEVGRQQGSAAGXXXXXXXXXXXXXXXXXXXXXSRNTAR--AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPDVRSEIVAMMREASMSKDKDKLEGAIKKAEDAGLHFEASQGRRQLGRIVG 220
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig13.2218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYX2_ECTSI8.220e-1551.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig13contigF-serratus_M_contig13:1324324..1328484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002800.1
Exons3
Model size1313
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig13.2218.1prot_F-serratus_M_contig13.2218.1Fucus serratus malepolypeptideF-serratus_M_contig13 1324404..1327848 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929248.5072672-UTR-F-serratus_M_contig13:1324323..13244031622929248.5072672-UTR-F-serratus_M_contig13:1324323..1324403Fucus serratus maleUTRF-serratus_M_contig13 1324324..1324403 +
1690962768.2701383-UTR-F-serratus_M_contig13:1324323..13244031690962768.2701383-UTR-F-serratus_M_contig13:1324323..1324403Fucus serratus maleUTRF-serratus_M_contig13 1324324..1324403 +
1622929248.5887887-UTR-F-serratus_M_contig13:1327848..13284841622929248.5887887-UTR-F-serratus_M_contig13:1327848..1328484Fucus serratus maleUTRF-serratus_M_contig13 1327849..1328484 +
1690962768.3034077-UTR-F-serratus_M_contig13:1327848..13284841690962768.3034077-UTR-F-serratus_M_contig13:1327848..1328484Fucus serratus maleUTRF-serratus_M_contig13 1327849..1328484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929248.5245726-CDS-F-serratus_M_contig13:1324403..13244991622929248.5245726-CDS-F-serratus_M_contig13:1324403..1324499Fucus serratus maleCDSF-serratus_M_contig13 1324404..1324499 +
1690962768.2790627-CDS-F-serratus_M_contig13:1324403..13244991690962768.2790627-CDS-F-serratus_M_contig13:1324403..1324499Fucus serratus maleCDSF-serratus_M_contig13 1324404..1324499 +
1622929248.5376182-CDS-F-serratus_M_contig13:1324930..13252601622929248.5376182-CDS-F-serratus_M_contig13:1324930..1325260Fucus serratus maleCDSF-serratus_M_contig13 1324931..1325260 +
1690962768.2870324-CDS-F-serratus_M_contig13:1324930..13252601690962768.2870324-CDS-F-serratus_M_contig13:1324930..1325260Fucus serratus maleCDSF-serratus_M_contig13 1324931..1325260 +
1622929248.5563917-CDS-F-serratus_M_contig13:1327677..13278481622929248.5563917-CDS-F-serratus_M_contig13:1327677..1327848Fucus serratus maleCDSF-serratus_M_contig13 1327678..1327848 +
1690962768.294869-CDS-F-serratus_M_contig13:1327677..13278481690962768.294869-CDS-F-serratus_M_contig13:1327677..1327848Fucus serratus maleCDSF-serratus_M_contig13 1327678..1327848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig13.2218.1

>prot_F-serratus_M_contig13.2218.1 ID=prot_F-serratus_M_contig13.2218.1|Name=mRNA_F-serratus_M_contig13.2218.1|organism=Fucus serratus male|type=polypeptide|length=199bp
MADDDEVEKFKRLYEEQRAKVKDLERQNSQLKDVIQQLMEAARQAPANRN
PAATGAGGRGRSRPGPSRTNNPSASVNTGGRGRGNASSNQRTGSAGGGQA
TVIATRSGEGSVQESRDSSAATGEALVAAAVAAAAARNKQESTQPPEPDV
RDDIVSQMREASMSKDRAKLEAAIKKAEDAGLHFEANQGRRQLSRISG*
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mRNA from alignment at F-serratus_M_contig13:1324324..1328484+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig13.2218.1 ID=mRNA_F-serratus_M_contig13.2218.1|Name=mRNA_F-serratus_M_contig13.2218.1|organism=Fucus serratus male|type=mRNA|length=4161bp|location=Sequence derived from alignment at F-serratus_M_contig13:1324324..1328484+ (Fucus serratus male)
AGCTGGTTCTCTTGGGCATTCCGTGTGAACTGTACAAAGGACTGCAGCAG
CAAAAATAGTGTTGTATAAACCGAGAAGCGATGGCGGATGATGATGAAGT
TGAGAAGTTTAAGCGCCTCTACGAAGAGCAGAGGGCCAAAGTGAAGGACT
TGGAGCGACAAAATTCCCAACTGAAGGTATGTTACAACACCATTTTGTTG
CTTGTCGAGAGTATATGGTATATTCTAAGGCCTAGAGACGTGATATCAAA
TCCGCACCTTCCGACCATTCGGTTGGCAGCCAGGGAACAGATAACCAAAT
GAAGCGGTGTGTCCATGATCGACGTTTACCGTCGCAATAGATCCTTGGCG
GTGTTAAGGAATTCGAATTCTTAAACGTAAAGTAAAAGTCCCAAGCGTTT
GAGCATTTCTCTGGCATCTGATGACCTGCAGCTGTGCTTACAGAAACCTG
CGTCCAGACCATCGCTACAAATACATCAATCACAGATAAATGAATACCAG
GTATAATACATATTCCCGACTCTCAACTGCAGGTAGGCCTATATTTATGA
TTACAAGGTCGCACTGCGACAATTTTGCAATTTTACAGTCCTCGCCTTCC
CGAACAGGATGTTATCCAGCAGCTTATGGAAGCGGCGCGCCAAGCACCTG
CGAACAGGAACCCGGCAGCCACCGGTGCGGGCGGGCGCGGTCGCTCGCGG
CCGGGACCGTCGCGGACCAACAATCCCTCCGCGTCTGTTAACACCGGTGG
TAGAGGCAGAGGCAACGCTAGCTCAAACCAACGAACGGGTTCAGCAGGGG
GGGGGCAGGCGACCGTGATAGCTACTCGCAGCGGTGAAGGAAGTGTGCAA
GAATCTCGAGATTCTTCTGCTGCGACCGGGGAGGCTTTGGTGGCGGCGGC
GGTAGCGGCGGCGGCAGCTCGAAACAAGCAAGAATCGGTGAGAAGAAAGG
GGAGACAGAGGGAAAATGGTGGCGGGGTCATCAAGGATAGCTTTGCTCCG
AAACTGGTGCATAACTTGATAAAATTACATTTAGAGCGATCTTACGACAC
TCTTCAAGGTTTCAGCAAGTCAACAAGCTATAATAGGGCTGGAACGGGTA
GTTTGCACTGTTTTCAATTGTGTCCAGATGACACATAGCCATTTCAACTT
CACCGCATTCAATATCAATATCGGCGACGGTCGCATTTCTTACCGGCAAT
TTAGCCAAAGCTCTTCTGTACAAAGTTGTGCCTGCCGATTCATCAGCCCG
CGCCATTACCATTACCATTACCATTAATTATCACACCGTTGTGCGACACT
GAATCCCTTTTAGGGAAAATACCCCCTGTACACTAACTAAGTACGCTATA
GGAAACGTACATTCTGCTAAGGTAGTAGTCTATAATAGTGAGTATGGTAA
AACAAGACGCAACACCTGCTACTCCTACCTGCTGTACACTAACTAAGTAC
GCTAAAGGGCACGTACACTCTGCCAAGGTCGTATTAATAGTAAGTGTGGA
AAAACAAGACGCAACGCCTGCTACTCCAGCTACCTTGAGAACAGCTGGCC
CCGTGCCGGCGGACTCTCGGCAGTGAACGCCATCGGTACGCAACTGCGTG
GCCTGATAAACTTGGGACTGACCCGATGGCCGTTGACGGTACCGATGGAC
ACCATCGTGGAAAGCGGGAGGAATGAGAGGAGCCCGTGAGTATGCGCCAG
ATTTAGCCTGGGTGTGGAGAATCAGGAGGCTGACGCGGGGGACGAATCGC
CCAAACCTGTCCCGCGAGACCAAAGTCTGAGGCGCGAATGGGAACAGTTC
AGCTGGTCATAAGCAATATTGGCAACCGTACCCGGGTGGTGCCTATTCTG
GTGAACGTAATGACCATTAACAGTAACAACAATGAAAACATAATATATAG
AGGGGGGGGGTGGGGGGCGTTGACCCCGTGAACCGGAGGAGCCCATTCCC
CCACTCCAGCATATATTTTGTGCTGCTTCTCGGAAGATACAGTAATAACC
AGCATTGCCATCTTATATGAGTGCCAGGATGTAATCCCCTTTCGATCAAT
GGCATTTGCTCTAAAACTGACAAGTTCCTGGGATGACGGGTCCGCTCGCC
CATAGCTCTCCGTACCTCTGACCAGGGCACGATTTGGGACCTCGCAGGCC
AGCTGGGGTTTTATACGCGAACATTGTCTGGACGATATCTGGGTTTGGGT
TCTCGTCCGCGTTCGCGTTGGAATCGTGTGGAGTTAGTTCACAGGAGAGC
GAAAAGGCGACGGAAAGAAAAAGCGCACACGACACGAAATGAGCCGCGGG
AGACAGAAGCTTTAACCAAGCCCCGTAAAATGTCATGTGTAGCATTATTA
TTAATATTAATAGTAACCTTAGGTCTCCTACGACGCCAACCCCAGGACCT
TCTGCGTGTTTTTCGGTCATAACCCAGTTTGGAAAGCTCTTCGAAACTTA
GGTTATTAGCAAAACGCCTTGAAATGACATACGCCTAGTACCACCGCCGA
AGACGCAGGAGAGCTCTTGTCACCACGGAAAATGATGAACCATCAACCAT
CAATCATCAAGTCGTATGATTACGCCGTTACTTTCAACATGCCCACTTCA
TAACCAATAGTGGGTGTGGGAAAGAAAGGCGTATATTAATTGGTCCATAG
TGACCTGCGAAGGCAGCACTCGTTCGAAACTACCTTGAGGTATGCTGGCC
CTGTGCCGGCGGATTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGTG
ACCCGATTTACTCGGGACTGACCCGATGGCGTATGGCGGTTTAATATTAA
TATATGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCA
GATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCGGGACGGGACTGCC
GAAACCGTCTCGCGAGACCAAATTCCCAGGCGCGAACGCGGACAGGGGAA
TATTATTTTTCTCTGTTTAGCTGACCACGAGCAGGATTGGCAACCTTAAC
AGGTTGATCCATACTCTTGCTATATGTGTGACCATACATACATGATTAGC
TATCGATCTTCGGGTGCGAGAGTCCGCAGGCGAGAATCGCAAATTTTCTT
CGGTCGTCTCTAAACTACAGTACTAAAGCGCAGCACCAGAACCGTGCTCA
CCTTGTGGCTGTAATCACACTATTAATAGGCAAACAAGCGTAATGTTCCT
GGAATCCGCCGCCGTTTTCGCTCGGCTTCTTAAATTATAACCGTACCCAC
CGCCCAATTTCTCAACCCCCTATCCACGCGGCCCCTGCCTTCTTAATACA
AACAAATACGCATACTAATGTCTATCTACACTCGCCGCTACCGAGCGAAC
GCAGACTCAACCTCCGGAGCCGGATGTGCGGGACGACATCGTCTCGCAAA
TGCGAGAGGCGAGCATGAGCAAGGACAGGGCGAAGCTGGAGGCCGCGATC
AAGAAGGCGGAGGATGCCGGTCTCCACTTCGAGGCAAACCAGGGACGGCG
GCAACTAAGTCGGATATCCGGATGATTTCGTTTATGAGCCGATGTCGCGC
CGGCAGACCGTCCTCCGTTTGCGGGGGGAAGAGGCGTGTGAGGGGGAGGC
CGTGTCACGATGGGACTCAAATATGCAGACGCAAAACACAACGGGGCTAT
CTGGGGCCCGCTACGCTGTGCAGTGATCATGTCAGAGTTTCTCTGCCGTG
GAACTTTAGGTCCTTTTGAGGATTTCAGCGGAAGACCTGGGAATCAAAAG
TACGGATGGCGTTGAAGGGTGGGAGAAGAAGCAGACCGAGGCAACTTCGC
TAATGTACCGTGCGTACCTACCTGTCATCGCGAATTGGCAGCCCATCGTC
ATCAAGCATCATGTACGTTTTGTATACAGGTACCAGGGGCACCTCGCCCG
CCCCCCTGCAGGCGTCTGACGTATTTTTTGTTTCGGATCGTGAATTGAAT
CATCTCCTTTCGGGACGGCATACTGCGGTCACAAGGCGCCGCTGCCCTCT
GCCGGGCGCCGTCGTCGTTTACGGTGTGCGCCGCGTTTTCTTAAGCTTTG
CATCTTAATTAAAGACTTGAGTGAAACCGTTTGTCGTATCATTTTCATAG
CTCCCGGTGCTATTTAGGGCATATTTCCTTGAGAGAAAACTGCGGGATAA
AGTAAAGGGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig13:1324324..1328484+

>mRNA_F-serratus_M_contig13.2218.1 ID=mRNA_F-serratus_M_contig13.2218.1|Name=mRNA_F-serratus_M_contig13.2218.1|organism=Fucus serratus male|type=CDS|length=1194bp|location=Sequence derived from alignment at F-serratus_M_contig13:1324324..1328484+ (Fucus serratus male)
ATGGCGGATGATGATGAAGTTGAGAAGTTTAAGCGCCTCTACGAAGAGCA
GAGGGCCAAAGTGAAGGACTTGGAGCGACAAAATTCCCAACTGAAGATGG
CGGATGATGATGAAGTTGAGAAGTTTAAGCGCCTCTACGAAGAGCAGAGG
GCCAAAGTGAAGGACTTGGAGCGACAAAATTCCCAACTGAAGGATGTTAT
CCAGCAGCTTATGGAAGCGGCGCGCCAAGCACCTGCGAACAGGAACCCGG
CAGCCACCGGTGCGGGCGGGCGCGGTCGCTCGCGGCCGGGACCGTCGCGG
ACCAACAATCCCTCCGCGTCTGTTAACACCGGTGGTAGAGGCAGAGGCAA
CGCTAGCTCAAACCAACGAACGGGTTCAGCAGGGGGGGGGCAGGCGACCG
TGATAGCTACTCGCAGCGGTGAAGGAAGTGTGCAAGAATCTCGAGATTCT
TCTGCTGCGACCGGGGAGGCTTTGGTGGCGGCGGCGGTAGCGGCGGCGGC
AGCTCGAAACAAGCAAGAATCGGATGTTATCCAGCAGCTTATGGAAGCGG
CGCGCCAAGCACCTGCGAACAGGAACCCGGCAGCCACCGGTGCGGGCGGG
CGCGGTCGCTCGCGGCCGGGACCGTCGCGGACCAACAATCCCTCCGCGTC
TGTTAACACCGGTGGTAGAGGCAGAGGCAACGCTAGCTCAAACCAACGAA
CGGGTTCAGCAGGGGGGGGGCAGGCGACCGTGATAGCTACTCGCAGCGGT
GAAGGAAGTGTGCAAGAATCTCGAGATTCTTCTGCTGCGACCGGGGAGGC
TTTGGTGGCGGCGGCGGTAGCGGCGGCGGCAGCTCGAAACAAGCAAGAAT
CGACTCAACCTCCGGAGCCGGATGTGCGGGACGACATCGTCTCGCAAATG
CGAGAGGCGAGCATGAGCAAGGACAGGGCGAAGCTGGAGGCCGCGATCAA
GAAGGCGGAGGATGCCGGTCTCCACTTCGAGGCAAACCAGGGACGGCGGC
AACTAAGTCGGATATCCGGATGAACTCAACCTCCGGAGCCGGATGTGCGG
GACGACATCGTCTCGCAAATGCGAGAGGCGAGCATGAGCAAGGACAGGGC
GAAGCTGGAGGCCGCGATCAAGAAGGCGGAGGATGCCGGTCTCCACTTCG
AGGCAAACCAGGGACGGCGGCAACTAAGTCGGATATCCGGATGA
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