mRNA_F-serratus_M_contig13.2197.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig13.2197.1
Unique NamemRNA_F-serratus_M_contig13.2197.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig13.2197.1 vs. uniprot
Match: D7FYV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV5_ECTSI)

HSP 1 Score: 460 bits (1183), Expect = 4.350e-160
Identity = 212/276 (76.81%), Postives = 229/276 (82.97%), Query Frame = 1
Query:  247 YLTLPLLWSHRAVHGNAGCTLFNWCNGHGTCNTATSTCTCDEGWGADTDITLYRAADCSARVCPSGKSWGDVPSGPMTAHQEQECSNRGLCDRDTGQCSCFDGFSGAACERSPCPNDCSDHGRCVNMKALATTSDALPLSNVTTYTGEEQSAKDTHIRREDDTVTWDEDMIYGCVCDSSWEVGLGTGQTQEPEWFGPDCSLRHCPSGDDPTTTDEDETDCSNATSLSAYSGNLGREGNLCQVDCSNRGACDYETGLCDCFTGYYGHNCGLQSALAK 1074
            +L L   W    V GNAGC+LFNWCNGHGTCNT T TCTC EGWGADTD+TLYRAADCSARVCP+GK+WGDVP+G ++AHQEQECS RGLCDRD+G+C CFDGF+GAACERS CP+DCSDHGRCVNMKALA TSDALPLSNVTTY+GE            DDTVTWDE+MI+GCVCDS WEVGLG GQTQEPEWFGPDCSLRHCPSGDDP+T D DETDC N TS S Y G  GR GNLC VDCSNRG CDY TGLC+CFTGYYG NCG QS LAK
Sbjct:    7 FLLLVSSWIFTTVQGNAGCSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDVPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSDALPLSNVTTYSGE------------DDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPST-DVDETDCFNVTSSSVYLGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLAK 269          
BLAST of mRNA_F-serratus_M_contig13.2197.1 vs. uniprot
Match: A0A8J2X5G2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5G2_9STRA)

HSP 1 Score: 320 bits (821), Expect = 2.790e-105
Identity = 152/258 (58.91%), Postives = 176/258 (68.22%), Query Frame = 1
Query:  301 CTLFNWCNGHGTCNTATSTCTCDEGWGADTDITLYRAADCSARVCPSGKSWGDVPSGPMTAHQEQECSNRGLCDRDTGQCSCFDGFSGAACERSPCPNDCSDHGRCVNMKALATTSDALPLSNVTTYTGEEQSAKDTHIRREDDTVTWDEDMIYGCVCDSSWEVGLGTGQTQEPEWFGPDCSLRHCPSGDDPTTTDEDETDCSNATSLSAYSGNLGREGNLCQVDCSNRGACDYETGLCDCFTGYYGHNCGLQSALAK 1074
            C   N+CNGHG C  AT TC C EGWGA TD+ LY+  DCS R CPSG +W DV S   TAH   ECS +G C++ TG C C  GFSG AC+R  C  DCS HG+CV+MK +AT  +ALPLS   TYTG E + +            WD+D IYGCVCDSSW VGLG GQ QEPEWFGP CSLRHCPSGDDP TT  DET+C+  T+   Y   +G +GNLCQVDC+NRG CD ETG C C+TG YGH+C L SALA+
Sbjct:   18 CIDMNFCNGHGHCEPATDTCDCYEGWGAKTDVALYKLHDCSGRTCPSGPAWADVASDSKTAHAPAECSGKGTCNKATGTCKCVSGFSGDACQRFGCLYDCSGHGQCVSMKKMATMPNALPLSKPATYTGLETTER------------WDQDRIYGCVCDSSWPVGLGPGQRQEPEWFGPWCSLRHCPSGDDPYTTHVDETNCTGVTAAGGYG--VGEKGNLCQVDCANRGKCDTETGECSCWTGSYGHDCTLLSALAR 261          
BLAST of mRNA_F-serratus_M_contig13.2197.1 vs. uniprot
Match: A0A8K1CPX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPX8_PYTOL)

HSP 1 Score: 303 bits (775), Expect = 1.270e-98
Identity = 138/244 (56.56%), Postives = 172/244 (70.49%), Query Frame = 1
Query:  319 CNGHGTCNTATSTCTCDEGWGADTDITLYRAADCSARVCPSGKSWGDVPSGPMTAHQEQECSNRGLCDRDTGQCSCFDGFSGAACERSPCPNDCSDHGRCVNMKALATTSDALPLSNVTTYTGEEQSAKDTHIRREDDTVTWDEDMIYGCVCDSSWEVGLGTGQTQEPEWFGPDCSLRHCPSGDDPTTTDEDETDCSNATSLSAYSGNLGREGNLCQVDCSNRGACDYETGLCDCFTGYYGHNC 1050
            CNGHG CNTAT TCTC EG+GA TD+ +Y+A DCS RVCP+G SWG +P+    AH   ECS+ G+CDR +GQC C+ G+ G+AC+RS C N CS HGRCV+M+ +AT + A PLS   TY G E            DT TWD++ I+GC+CDSSW VGLG+GQ Q+ EWFGPDCSL  CP+GDDP T   DETDC+  T+  + S  +G+ GN C VDC+NRG CDY +G C CF+G+YG NC
Sbjct:    5 CNGHGRCNTATKTCTCFEGYGAATDVAVYKAPDCSQRVCPAGPSWGGIPTDETVAHALAECSDMGVCDRSSGQCKCYRGYEGSACQRSTCLNGCSGHGRCVSMREMATITSAFPLSPAATYEGAE------------DTTTWDQNRIFGCLCDSSWAVGLGSGQRQQSEWFGPDCSLLRCPTGDDPLTA-VDETDCNGKTATDSTS--VGQPGNRCHVDCANRGICDYTSGTCMCFSGFYGSNC 233          
BLAST of mRNA_F-serratus_M_contig13.2197.1 vs. uniprot
Match: W4H3P7_9STRA (EGF-like domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H3P7_9STRA)

HSP 1 Score: 303 bits (775), Expect = 3.780e-98
Identity = 143/267 (53.56%), Postives = 176/267 (65.92%), Query Frame = 1
Query:  265 LWSHRAVHGNAGCTLFNWCNGHGTCNTATSTCTCDEGWGADTDITLYRAADCSARVCPSGKSWGDVPSGPMTAHQEQECSNRGLCDRDTGQCSCFDGFSGAACERSPCPNDCSDHGRCVNMKALATTSDALPLSNVTTYTGEEQSAKDTHIRREDDTVTWDEDMIYGCVCDSSWEVGLGTGQTQEPEWFGPDCSLRHCPSGDDPTTTDEDETDCSNATSLSAYSG-NLGREGNLCQVDCSNRGACDYETGLCDCFTGYYGHNCGLQS 1062
            +WS+  V G+  C   N C+GHG CNT T  CTC  GWG+ +DI+  +AADCS RVCPSG SW  +P+ P TAH   ECS+ G+CD  +G+C CF GF GAAC+R+ CP DCS HG C++M+ALA  S ALPLS  TTY G+              T TWD+D ++GCVCDS W VGL +GQ Q   WFG DCSL+HCP GDDP T   DE +C   T ++A  G  +G  GN+C ++CSNRG CDY TGLC CF G+YG NCG  S
Sbjct:   21 VWSYNPVGGDL-CNALNDCSGHGKCNTLTKVCTCSNGWGSPSDISHNKAADCSRRVCPSGASWNSIPTLPTTAHTAAECSDMGVCDTTSGECKCFPGFVGAACDRTSCPKDCSGHGICMSMRALAGVSAALPLSAPTTYGGQPS------------TTTWDQDRLFGCVCDSPWAVGLASGQVQASGWFGADCSLQHCPYGDDPVTIGTDELNC---TGVAAPGGMGVGASGNVCFIECSNRGVCDYITGLCTCFEGFYGSNCGTMS 271          
BLAST of mRNA_F-serratus_M_contig13.2197.1 vs. uniprot
Match: A0A7S1CQ07_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ07_9STRA)

HSP 1 Score: 302 bits (774), Expect = 7.490e-98
Identity = 146/258 (56.59%), Postives = 176/258 (68.22%), Query Frame = 1
Query:  319 CNGHGTCNTATSTCTCDEGWGADTDITLYRAADCSARVCPSGKSWGDVPSGPMTAHQEQECSNRGLCDRDTGQCSCFDGFSGAACERSPCPNDCSDHGRCVNMKALATTSDALPL---SNVTTYTGEEQSAKDTHIRREDDTVTWDEDMIYGCVCDSSWEVGLGTGQTQEPEWFGPDCSLRHCPSGDDPTTTDEDETDC----SNATSLSAYSGNLGREGNLCQVDCSNRGACDYETGLCDCFTGYYGHNCGLQSALA 1071
            CNGHGTCNTAT+ C C +GWG+ +D+T YRA DCS RVCPSG +W D  +   TAH   ECSN G+CDR TG+C CF G+ G AC+RS CPN+CS HG+CV++  +A+ ++A P+   S   TY G E  A            TWDED I+GCVCDSSW V L +G TQEPEWFG DCSLRHC SGDDP TT  DETDC     N  +++  +G  G  GNLC VDC+NRG C+Y TG+CDCF G+YG  C LQS LA
Sbjct:   36 CNGHGTCNTATTQCACYDGWGSSSDVTTYRAPDCSKRVCPSGNAWADAATATNTAHALAECSNAGICDRTTGKCRCFTGYDGEACQRSACPNECSGHGKCVSIAQMASENNAQPVDIESPAFTYGGSEAVA------------TWDEDKIFGCVCDSSWTVSLASGATQEPEWFGADCSLRHCASGDDPMTT-ADETDCVGKVRNGQTVAGRTG--GVAGNLCHVDCANRGICNYNTGICDCFDGFYGVACTLQSELA 278          
BLAST of mRNA_F-serratus_M_contig13.2197.1 vs. uniprot
Match: A0A485KUX1_9STRA (Aste57867_11942 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUX1_9STRA)

HSP 1 Score: 300 bits (768), Expect = 4.610e-97
Identity = 148/284 (52.11%), Postives = 183/284 (64.44%), Query Frame = 1
Query:  214 QRQLSPSSLIPYLTLPLLWSHRAVHGNAGCTLFNWCNGHGTCNTATSTCTCDEGWGADTDITLYRAADCSARVCPSGKSWGDVPSGPMTAHQEQECSNRGLCDRDTGQCSCFDGFSGAACERSPCPNDCSDHGRCVNMKALATTSDALPLSNVTTYTGEEQSAKDTHIRREDDTVTWDEDMIYGCVCDS-SWEVGLGTGQTQEPEWFGPDCSLRHCPSGDDPTTTDEDETDCSNATSLSAYSGNLGREGNLCQVDCSNRGACDYETGLCDCFTGYYGHNCGLQS 1062
            +R+LS   +   L LP    +  V G+  C     CNGHG CNTAT  CTC  GWG+ TDI++ + ADCS+RVCPSG SW  +P+   TAH   ECS+ GLC+  TG+C CF GF GAACER+ CPNDCS HG CV+M+ +A  S+A+PLS  TTY G               T TWD+D ++GCVCD+ SW VGL +GQ Q  ++FG DCSL HCPSG+DP TT  DE DCSN  +   +    G  GN+C V+CSNRG CD+ TGLC CF G+YG NCG  S
Sbjct:    6 RRRLSARLVSLLLVLPAARGYNPVGGDL-CNSLGDCNGHGFCNTATKVCTCQNGWGSATDISINKLADCSSRVCPSGPSWSSIPTASDTAHTVTECSDSGLCNTATGECKCFPGFGGAACERATCPNDCSGHGICVSMRNMAMMSNAMPLSPPTTYQGFAL------------TTTWDQDRLFGCVCDAPSWTVGLASGQVQAAQYFGADCSLMHCPSGNDPMTT-ADELDCSNVAAPGGFG--TGASGNICFVECSNRGVCDFTTGLCTCFDGFYGANCGTMS 273          
BLAST of mRNA_F-serratus_M_contig13.2197.1 vs. uniprot
Match: A0A835YN50_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN50_9STRA)

HSP 1 Score: 296 bits (758), Expect = 3.660e-95
Identity = 148/270 (54.81%), Postives = 171/270 (63.33%), Query Frame = 1
Query:  298 GCTLFNWCNGHGTCNTATSTCTCDEGWGADTDITLYRAADCSARVCPSGKSWGDVPSGPMTAHQEQECSNRGLCDRDTGQCSCFDGFSGAACERSPCPNDCSDHGRCVNMKALATTSDALPLS-NVTTYTGEEQSAKDTHIRREDDTVTWDEDMIYGCVCDSSWEVGLGTGQTQEPEWFGPDCSLRHCPSGDDP-----TTTDEDET-----DCSN-ATSLSAYSGNLGREGNLCQVDCSNRGACDYETGLCDCFTGYYGHNCGLQSALA 1071
            GC   N CNGHG C+   + C C EGWGAD+DI+LY+A DCSARVCPSG +WGDVP+   TAH   ECS  GLCDRD+G C CF GF G AC+R  CPN+CS HGRC+++K +    +ALPLS N   Y G+E +             TWDED I+GCVCDSSW VGL   +TQ  EWFGPDCSLRHCPSG+DP     T     E      +C   AT       + G EGNLC VDCS RG CDY TG+C CF GYYG NCG    LA
Sbjct:   38 GCDQHNNCNGHGVCSQQDAVCLCYEGWGADSDISLYKAQDCSARVCPSGPAWGDVPTAKYTAHAALECSGMGLCDRDSGVCRCFTGFEGDACQRMACPNNCSGHGRCMSLKNMVNEPNALPLSSNAHEYGGDELAT------------TWDEDRIFGCVCDSSWAVGLKATETQAVEWFGPDCSLRHCPSGNDPAQLQLTPAHPAEKPILTINCEGVATPGVVEKDSEGAEGNLCHVDCSGRGVCDYATGVCQCFNGYYGQNCGTVDVLA 295          
BLAST of mRNA_F-serratus_M_contig13.2197.1 vs. uniprot
Match: G5A2N6_PHYSP (EGF-like domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G5A2N6_PHYSP)

HSP 1 Score: 295 bits (754), Expect = 6.200e-95
Identity = 138/271 (50.92%), Postives = 172/271 (63.47%), Query Frame = 1
Query:  259 PLLWSHRAVHGNAGCTLFNWCNGHGTCNTATSTCTCDEGWGADTDITLYRAADCSARVCPSGKSWGDVPSGPMTAHQEQECSNRGLCDRDTGQCSCFDGFSGAACERSPCPNDCSDHGRCVNMKALATTSDALPLSNVTTYTGEEQSAKDTHIRREDDTVTWDEDMIYGCVCDSSWEVGLGTGQTQEPEWFGPDCSLRHCPSGDDPTTTDEDETDCSNATSLSAYSGNLGREGNLCQVDCSNRGACDYETGLCDCFTGYYGHNCGLQSALA 1071
            PL  +   V     C   + CN HG C+  T TC C+EG+GA TDIT YR+ DCS R CP+G SWG +P+   T+H + ECS+ G+CDR TG C C+ G+ G+AC+RS CPN CS HG+C++M+ LAT + A PLS  TTY G+  +             TWD+D I GC+CDS W VGLG G++Q  +WFGPDCS  HCPSGDDP T  EDETDC    +        G  GNLC VDC+NRG CDY +G+C CF G+YG NC   S LA
Sbjct:   21 PLARAQLGVPTGNLCAALSNCNAHGRCDALTKTCECNEGYGASTDITNYRSPDCSLRTCPAGPSWGGIPTSATTSHAKAECSDAGVCDRSTGTCMCYYGYEGSACQRSTCPNGCSGHGQCLSMRELATETSAFPLSPATTYGGDVTAT------------TWDQDRIQGCLCDSYWPVGLGAGESQLSQWFGPDCSRMHCPSGDDPMTA-EDETDCEGVVAAGGVG--PGAAGNLCHVDCANRGICDYSSGVCSCFPGFYGSNCASLSPLA 276          
BLAST of mRNA_F-serratus_M_contig13.2197.1 vs. uniprot
Match: A0A5D6XZL0_9STRA (EGF-like domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZL0_9STRA)

HSP 1 Score: 293 bits (750), Expect = 1.720e-94
Identity = 145/281 (51.60%), Postives = 179/281 (63.70%), Query Frame = 1
Query:  208 MTQRQLSPSSLIPYLTLPLLWSHRAVHGNAGCTLFNWCNGHGTCNTATSTCTCDEGWGADTDITLYRAADCSARVCPSGKSWGDVPSGPMTAHQEQECSNRGLCDRDTGQCSCFDGFSGAACERSPCPNDCSDHGRCVNMKALATTSDALPLSNVTTYTGEEQSAKDTHIRREDDTVTWDEDMIYGCVCDSSWEVGLGTGQTQEPEWFGPDCSLRHCPSGDDPTTTDEDETDCSNATSLSAYSGNLGREGNLCQVDCSNRGACDYETGLCDCFTGYYGHNC 1050
            +++R L P+S    L +P         GN  C+  + CNGHG C TA+ TC C EG+GA +DIT Y++ DCS RVCPSG SW  +P+   +AH   ECS+ G CDR +GQC CF G+ GAAC+R  CPN CS HG+CV+M+A+A  ++A PLS  TTY G E             T TWD++ I+GCVCDSSW+VGL  GQ Q  +WFG DCSL  CPSGDDP TT  DETDC     L+      G  GN C +DCSNRG CDY TG C CF+G+YG NC
Sbjct:    2 LSRRLLRPASAEASLGVP--------SGNL-CSALSNCNGHGRCVTASKTCICFEGYGATSDITSYKSPDCSKRVCPSGPSWAGIPTAANSAHPRTECSDAGYCDRSSGQCRCFAGYDGAACQRYACPNGCSGHGQCVSMQAMAELTNAAPLSAATTYAGAEA------------TTTWDQNRIFGCVCDSSWDVGLAAGQRQSSQWFGADCSLMRCPSGDDPMTT-VDETDCGGK--LAPGGVGTGETGNKCHIDCSNRGKCDYTTGTCACFSGFYGSNC 258          
BLAST of mRNA_F-serratus_M_contig13.2197.1 vs. uniprot
Match: A0A5A8D842_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D842_CAFRO)

HSP 1 Score: 293 bits (749), Expect = 6.410e-94
Identity = 143/284 (50.35%), Postives = 174/284 (61.27%), Query Frame = 1
Query:  295 AGCTLFNWCNGHGTCNTATSTCTCDEGWGADTDITLYRAADCSARVCPSGKSWGDVPSGPMTAHQEQECSNRGLCDRDTGQCSCFDGFSGAACERSPCPNDCSDHGRCVNMKALATTSDALPLSNVTTYTGEEQSAKDTHIRREDDTVTWDEDMIYGCVCDSSWEVGLGTGQTQEPEWFGPDCSLRHCPSGDDPTTTDEDETDCS--------------------NATSLSAYSGNLGRE----GNLCQVDCSNRGACDYETGLCDCFTGYYGHNCGLQSALAK 1074
            + C   N CN HGTC+     C C +G+G+++D+ +Y+A DCS RVCP+ K+W D+P+G  TAH   ECSN G+CDR TG+C CF GF G AC+RS CPN CS HG+CV+M  +A  ++A P+   TTY G E             TVTWDE+ I+GCVCDS W VG G GQTQ   WFG DCS R CPSGDD +T   DETDCS                     A   +  +G LG +    GN C VDCSNRG CD  +GLC CF GYYG NCGL+SALAK
Sbjct:   20 SACAHLNNCNSHGTCDETNRVCRCFDGFGSESDLAVYKAPDCSQRVCPADKAWVDIPTGATTAHNNAECSNAGICDRGTGRCRCFAGFEGDACQRSSCPNGCSGHGKCVSMSQMAGEANAFPVGPATTYGGFES------------TVTWDENKIFGCVCDSIWTVGFGAGQTQATSWFGADCSQRRCPSGDDASTELRDETDCSYYTDNGETWHGAVLSDGTPDRANPGTGVTGTLGVDFGAVGNKCHVDCSNRGICDRTSGLCKCFRGYYGQNCGLRSALAK 291          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig13.2197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYV5_ECTSI4.350e-16076.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2X5G2_9STRA2.790e-10558.91Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8K1CPX8_PYTOL1.270e-9856.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4H3P7_9STRA3.780e-9853.56EGF-like domain-containing protein n=1 Tax=Aphanom... [more]
A0A7S1CQ07_9STRA7.490e-9856.59Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A485KUX1_9STRA4.610e-9752.11Aste57867_11942 protein n=1 Tax=Aphanomyces stella... [more]
A0A835YN50_9STRA3.660e-9554.81EGF-like domain-containing protein n=1 Tax=Tribone... [more]
G5A2N6_PHYSP6.200e-9550.92EGF-like domain-containing protein n=4 Tax=Phytoph... [more]
A0A5D6XZL0_9STRA1.720e-9451.60EGF-like domain-containing protein n=1 Tax=Pythium... [more]
A0A5A8D842_CAFRO6.410e-9450.35Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig13contigF-serratus_M_contig13:549598..553350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score468.0
Seed ortholog evalue3.2e-129
Seed eggNOG ortholog2880.D7FYV5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.EGF-like domain
EggNOG OGs2A4YC@1,2RY8D@2759
Ec32 ortholog descriptionSecreted EGF-like domain protein
Ec32 orthologEc-19_002620.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1227
Cds size870
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig13.2197.1prot_F-serratus_M_contig13.2197.1Fucus serratus malepolypeptideF-serratus_M_contig13 549748..552081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929245.3050065-UTR-F-serratus_M_contig13:549597..5497471622929245.3050065-UTR-F-serratus_M_contig13:549597..549747Fucus serratus maleUTRF-serratus_M_contig13 549598..549747 -
1690962766.913426-UTR-F-serratus_M_contig13:549597..5497471690962766.913426-UTR-F-serratus_M_contig13:549597..549747Fucus serratus maleUTRF-serratus_M_contig13 549598..549747 -
1622929245.4381554-UTR-F-serratus_M_contig13:552081..5521111622929245.4381554-UTR-F-serratus_M_contig13:552081..552111Fucus serratus maleUTRF-serratus_M_contig13 552082..552111 -
1690962766.97605-UTR-F-serratus_M_contig13:552081..5521111690962766.97605-UTR-F-serratus_M_contig13:552081..552111Fucus serratus maleUTRF-serratus_M_contig13 552082..552111 -
1622929245.525389-UTR-F-serratus_M_contig13:553173..5533501622929245.525389-UTR-F-serratus_M_contig13:553173..553350Fucus serratus maleUTRF-serratus_M_contig13 553174..553350 -
1690962766.9854069-UTR-F-serratus_M_contig13:553173..5533501690962766.9854069-UTR-F-serratus_M_contig13:553173..553350Fucus serratus maleUTRF-serratus_M_contig13 553174..553350 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929245.3268425-CDS-F-serratus_M_contig13:549747..5498791622929245.3268425-CDS-F-serratus_M_contig13:549747..549879Fucus serratus maleCDSF-serratus_M_contig13 549748..549879 -
1690962766.92882-CDS-F-serratus_M_contig13:549747..5498791690962766.92882-CDS-F-serratus_M_contig13:549747..549879Fucus serratus maleCDSF-serratus_M_contig13 549748..549879 -
1622929245.3451896-CDS-F-serratus_M_contig13:550265..5504891622929245.3451896-CDS-F-serratus_M_contig13:550265..550489Fucus serratus maleCDSF-serratus_M_contig13 550266..550489 -
1690962766.9393218-CDS-F-serratus_M_contig13:550265..5504891690962766.9393218-CDS-F-serratus_M_contig13:550265..550489Fucus serratus maleCDSF-serratus_M_contig13 550266..550489 -
1622929245.3585818-CDS-F-serratus_M_contig13:550879..5510911622929245.3585818-CDS-F-serratus_M_contig13:550879..551091Fucus serratus maleCDSF-serratus_M_contig13 550880..551091 -
1690962766.9474628-CDS-F-serratus_M_contig13:550879..5510911690962766.9474628-CDS-F-serratus_M_contig13:550879..551091Fucus serratus maleCDSF-serratus_M_contig13 550880..551091 -
1622929245.3994699-CDS-F-serratus_M_contig13:551231..5513841622929245.3994699-CDS-F-serratus_M_contig13:551231..551384Fucus serratus maleCDSF-serratus_M_contig13 551232..551384 -
1690962766.9567614-CDS-F-serratus_M_contig13:551231..5513841690962766.9567614-CDS-F-serratus_M_contig13:551231..551384Fucus serratus maleCDSF-serratus_M_contig13 551232..551384 -
1622929245.4166067-CDS-F-serratus_M_contig13:551932..5520811622929245.4166067-CDS-F-serratus_M_contig13:551932..552081Fucus serratus maleCDSF-serratus_M_contig13 551933..552081 -
1690962766.9660895-CDS-F-serratus_M_contig13:551932..5520811690962766.9660895-CDS-F-serratus_M_contig13:551932..552081Fucus serratus maleCDSF-serratus_M_contig13 551933..552081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig13.2197.1

>prot_F-serratus_M_contig13.2197.1 ID=prot_F-serratus_M_contig13.2197.1|Name=mRNA_F-serratus_M_contig13.2197.1|organism=Fucus serratus male|type=polypeptide|length=290bp
MTQRQLSPSSLIPYLTLPLLWSHRAVHGNAGCTLFNWCNGHGTCNTATST
CTCDEGWGADTDITLYRAADCSARVCPSGKSWGDVPSGPMTAHQEQECSN
RGLCDRDTGQCSCFDGFSGAACERSPCPNDCSDHGRCVNMKALATTSDAL
PLSNVTTYTGEEQSAKDTHIRREDDTVTWDEDMIYGCVCDSSWEVGLGTG
QTQEPEWFGPDCSLRHCPSGDDPTTTDEDETDCSNATSLSAYSGNLGREG
NLCQVDCSNRGACDYETGLCDCFTGYYGHNCGLQSALAK*
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mRNA from alignment at F-serratus_M_contig13:549598..553350-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig13.2197.1 ID=mRNA_F-serratus_M_contig13.2197.1|Name=mRNA_F-serratus_M_contig13.2197.1|organism=Fucus serratus male|type=mRNA|length=3753bp|location=Sequence derived from alignment at F-serratus_M_contig13:549598..553350- (Fucus serratus male)
GCTCTCTCGGGTTTTCTGGCTGCGCACTCGTCGCGCTTCTTCGACCGGTG CCTCCTACACTGGCGCCCTCCTTGCAGCACTCTCGGTTGATTCCTCGGCC GTGTATACTCTACATACAGTCTTGCACTCCTCTGGTGGTGCTATAGACCG GGCCGGTACTTTTCCTGCTCTCGACAGGTGCGGGCACAGACAAATCAAAA CTGTAACCTGGTTCCAGGCTCACTCCTTTGGGCTCTTGCGCTGGTCACGA GGTCCTAGCTCTCGTGCGGCCGGTGGTTCCTTACTCCTCACTGGCGCTAT CCTCACAGCGCGCTCGGCAGGTGGCGTCTCTGGCTCCTTCGGCCGATCGG TTATCAAACCCAAGCTCTTCGTAGCAGGGTTGTCTTTCGTCCCAAGCCTT GCTCTCCTTCACTAACTTCAAGTGATCTGAAATTCCCATTTTTTTCCAAA ACACGTCGTCTCCTTATCGATGCCCTCGCTTGCTCCAGAAACCTTCGATT AATCGTCCACTAGTCTAGTGCAGTTGAAAATCTCTAAGCTGGATAGGACT CACACGGGAGAGGTGGTGCTGTACTAGGGGTTTGGTGAGCAGGCTCGACA TGAACACATGTCAGACGAGTATAAAGACCGATATATTATTATTATATTGC TGAAGACCCCTCCTCGGTACTACAGTCAATATAAAGAACATCCTGAGTCC AAATACCAGACTGAACCAGACTGAAAAAGAGGGGGACCTCTGATCAAACA TAAGTAAGGATCTCCCAAACATGCATAGTAGACTGACTACTGAAACTGCC ATGAATCCTATCGGTCAGACTATCCCAGTAATCCATCTACATGTAGAAGG TAACTCCGAATAGAGGTTACCTCTGAGCTACCGGGGCGACCGGTTAATAT AAAAGCTATATTTGCTACATTATTGTGAAATCGAATTTTACGGCGTACAG ACAACTGACGAAGTACGTGTAAAGTAAAGTGCGTAGCAGCCGACGAATAG AACATGCATGTTATGCGTGTTGCCGAGGATACTGCGTTATTTTCTACCAG ATACTCTCCTCTCGGCCATGAAATGTAATCTAGCTCTCTCTATACTTAAT TAAAAGCACAATACAAGCAATGCGGTACGATGTACCAGACAGTACTGTAG TGGTACAATATCCCGCAATATCCAGGATCCAAACTGTCCCTATCCCCGTC AAGGAGAAGCCCACCTCGTCTCCCGTGCATTCCGTGCAGAGGCTACCTAC CATAGCTAGAGCTTGAGACATGACGCAGCGACAGCTGTCGCCGTCGTCAT TGATTCCCTACTTAACCCTTCCTTTGCTGTGGAGTCATCGCGCTGTCCAC GGCAACGCGGGCTGCACGCTCTTCAACTGGTGCAATGGGCATGGCACCTG CAACACGGCAACTAGCACGTATGTAGTATATATCATGATCCTTCTATAGA CTATTACATACCCGTGCATACATGTAAAACAATGCTATTAAAGTAGGCTT TTCTTGTGTACAATCCGTCCATATCCTGAGATGATATAGGCTCCGTAGAG TACTCGTAAAAGGGAGGGAGGGAACGAAGCAAAACGAGCCTGCCCGGAGC TTTGTTTCCTGTCGAGTTCTCTTCTCACACCGAAATAATCGAGTCGCAGA TATTGGCTAAAAATCTTCCTTTTCTTCCCAGGGCAGGCAGTGTCATTTTG TGATATACAGAGGACAACGCAGCCTCTTACGTTTCATCTATCACACACCA TGGTGTCATATCGGGATCGAGATTCGTTCCTCGAAGGAGAAAATCGCACG GTACAATACCTGTGTATCAAGGTTCTCCCAGCGATATTTTATTTTGCGCT GTATGCAACATACAAGGACCAACGTAGTAGTATACCGTAGTAGCAAATGG CTTAGCCCTAGTCTATGCATAAAGCTAAAAGTAACGCCCTTCGGACGCAT CATTTTTTGCCGGAAGGTGCACATGCGACGAGGGTTGGGGAGCCGACACC GACATCACGTTGTATCGCGCTGCGGATTGCTCTGCAAGGGTTTGTCCTTC GGGCAAGTCGTGGGGAGACGTACCCTCTGGACCCATGACTGCGCATCAGG AGCAAGAATGCTCTAATAGGTGATGGAGTAAACCTGCAGCTCTAATATGC TAATAATATAGATCTACGATGTGAGAGTTATATCGAGGTGAGTGCTGTAG TAGTAGACACTGTGATCAACAACGCCACCCCAGACAATCGACAATGCGTG GCTCTGCAGAGGACTCTGTGATCGAGACACGGGTCAGTGCAGCTGCTTCG ATGGCTTCTCCGGTGCCGCTTGCGAGCGATCTCCGTGCCCCAACGACTGC TCGGACCACGGCCGCTGCGTGAACATGAAGGCTCTTGCAACGACCTCGGA CGCGTTGCCTCTGTCCAACGTAACGACGTATACAGGCGAGGAACAATCGG CAAAAGATACACATATTCGGAGTACAGCAAGCGTTGCACTCAAACATTCA CTGTTGTGCTTATAACTCGTAGTCGTCTCAATGGTACATATGTAATGAAC TCAAACTATACACGCGTTGGATATTAGCTCAAAAGTGTGGAGAGGAAGAC GTACCGTACGAAACAAGGTACAACTGCCAGTGCACTCGCTGTGCATTGTA CAGATGTTATTGCATTCGAGCGCTACTTGTTCGAGTGGACGACAATACAA TACAGTAGCTCTAACTAAACGGCAGTTACATTTTGAGACTACACAAGATT ACACCCTGTTAATGAGCTAAATAGTAAAGAGATTGACTAACCCGTGGTGT CATTCGTCTCTGGATGCAGCCCCCCCCGCATTCAATCGCCTGACCACGAA CAACCCACCAGGGGAAGACGACACGGTAACATGGGACGAAGACATGATCT ATGGCTGCGTGTGCGACTCGTCGTGGGAGGTTGGTCTCGGTACGGGGCAA ACCCAGGAACCGGAGTGGTTCGGGCCAGACTGTTCGCTGAGACACTGCCC CAGCGGAGACGATCCGACCACGACAGATGAGGACGAAACGGACTGCTCCA ACGCGACCTCTTTGTCTGCATACAGTGGAAATTTGGTGAGACTGTATTTC TCCGGGCGTCCACAATGGGCGCTGACTTTGATTGATTTCTCTAACTTCAC CCTATTCTAGCTATCGCATCAGATCACTGCTGGATGCAAGAGAATCGATT TCGGTGTCGAATGAATGATCCGGTATGTAAGCCACGTTACCCGACCGTTC ATTCATAATGCAAAATAGCTGTGCGATGCTACTTCGGCGTGGGACAAATC GTTCCTTTTTCTTGTCCCCCCCCCCCCAAGTAAGCACTACACGGCAGTAC AACCTAGGTAAGCATTGAAAATCTAATCCGAGGCGTCCGCGAACTCAAGG GCCGAATGTACAATTGAACCGAGCCTTGAAGAACCTTCCTCCCTGTCACG GATCCCGCCCCTCCAAAGCAGGGCAGAGAGGGCAACCTATGTCAGGTGGA CTGTTCCAATCGTGGCGCGTGCGACTACGAAACAGGCCTGTGCGACTGCT TCACGGGCTACTACGGCCACAACTGCGGGCTACAATCCGCTCTCGCCAAG TAGTCTACGACCTGGTACTCTTATTGCAGGATGGCCTCTCTCGTCTATTG TGATAAAGACGTTGGGAGATTAGGTGCCGCGTCGTTTTTGTTTCGGCCGA TAATTTATCACGCCACGCACAGAGGGAAAGCTCGAGATGACCAAGAACTA CCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig13:549598..553350-

>mRNA_F-serratus_M_contig13.2197.1 ID=mRNA_F-serratus_M_contig13.2197.1|Name=mRNA_F-serratus_M_contig13.2197.1|organism=Fucus serratus male|type=CDS|length=1740bp|location=Sequence derived from alignment at F-serratus_M_contig13:549598..553350- (Fucus serratus male)
ATGACGCAGCGACAGCTGTCGCCGTCGTCATTGATTCCCTACTTAACCCT
TCCTTTGCTGTGGAGTCATCGCGCTGTCCACGGCAACGCGGGCTGCACGC
TCTTCAACTGGTGCAATGGGCATGGCACCTGCAACACGGCAACTAGCACA
TGACGCAGCGACAGCTGTCGCCGTCGTCATTGATTCCCTACTTAACCCTT
CCTTTGCTGTGGAGTCATCGCGCTGTCCACGGCAACGCGGGCTGCACGCT
CTTCAACTGGTGCAATGGGCATGGCACCTGCAACACGGCAACTAGCACGT
GCACATGCGACGAGGGTTGGGGAGCCGACACCGACATCACGTTGTATCGC
GCTGCGGATTGCTCTGCAAGGGTTTGTCCTTCGGGCAAGTCGTGGGGAGA
CGTACCCTCTGGACCCATGACTGCGCATCAGGAGCAAGAATGCTCTAATA
GGTGCACATGCGACGAGGGTTGGGGAGCCGACACCGACATCACGTTGTAT
CGCGCTGCGGATTGCTCTGCAAGGGTTTGTCCTTCGGGCAAGTCGTGGGG
AGACGTACCCTCTGGACCCATGACTGCGCATCAGGAGCAAGAATGCTCTA
ATAGAGGACTCTGTGATCGAGACACGGGTCAGTGCAGCTGCTTCGATGGC
TTCTCCGGTGCCGCTTGCGAGCGATCTCCGTGCCCCAACGACTGCTCGGA
CCACGGCCGCTGCGTGAACATGAAGGCTCTTGCAACGACCTCGGACGCGT
TGCCTCTGTCCAACGTAACGACGTATACAGGCGAGGAACAATCGGCAAAA
GATACACATATTCGGAAGGACTCTGTGATCGAGACACGGGTCAGTGCAGC
TGCTTCGATGGCTTCTCCGGTGCCGCTTGCGAGCGATCTCCGTGCCCCAA
CGACTGCTCGGACCACGGCCGCTGCGTGAACATGAAGGCTCTTGCAACGA
CCTCGGACGCGTTGCCTCTGTCCAACGTAACGACGTATACAGGCGAGGAA
CAATCGGCAAAAGATACACATATTCGGAGGGAAGACGACACGGTAACATG
GGACGAAGACATGATCTATGGCTGCGTGTGCGACTCGTCGTGGGAGGTTG
GTCTCGGTACGGGGCAAACCCAGGAACCGGAGTGGTTCGGGCCAGACTGT
TCGCTGAGACACTGCCCCAGCGGAGACGATCCGACCACGACAGATGAGGA
CGAAACGGACTGCTCCAACGCGACCTCTTTGTCTGCATACAGTGGAAATT
TGGGGAAGACGACACGGTAACATGGGACGAAGACATGATCTATGGCTGCG
TGTGCGACTCGTCGTGGGAGGTTGGTCTCGGTACGGGGCAAACCCAGGAA
CCGGAGTGGTTCGGGCCAGACTGTTCGCTGAGACACTGCCCCAGCGGAGA
CGATCCGACCACGACAGATGAGGACGAAACGGACTGCTCCAACGCGACCT
CTTTGTCTGCATACAGTGGAAATTTGGGCAGAGAGGGCAACCTATGTCAG
GTGGACTGTTCCAATCGTGGCGCGTGCGACTACGAAACAGGCCTGTGCGA
CTGCTTCACGGGCTACTACGGCCACAACTGCGGGCTACAATCCGCTCTCG
CCAAGTAGGGCAGAGAGGGCAACCTATGTCAGGTGGACTGTTCCAATCGT
GGCGCGTGCGACTACGAAACAGGCCTGTGCGACTGCTTCACGGGCTACTA
CGGCCACAACTGCGGGCTACAATCCGCTCTCGCCAAGTAG
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