mRNA_F-serratus_M_contig13.2195.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig13.2195.1
Unique NamemRNA_F-serratus_M_contig13.2195.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig13.2195.1 vs. uniprot
Match: D7FYV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV4_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.330e-15
Identity = 46/83 (55.42%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:  349 LFSYMMPPLAAVVHQARQDTP-DLRVFELQESPCLQGAGIALAVEG--DASLLAKHGPLPSRSYVILVNPRRRRVGKHSAEGG 588
            LF ++  P      + R D     RV ELQE+PCLQG+GI +AVEG   ASLLAKHGPLP RSY+ LV PR RRVG  + +GG
Sbjct:   40 LFVHVASPGGCGASRPRPDAGRQARVLELQENPCLQGSGIVIAVEGPCSASLLAKHGPLPDRSYICLVRPRSRRVGSANEKGG 122
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig13.2195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYV4_ECTSI1.330e-1555.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig13contigF-serratus_M_contig13:539160..540700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionADF-H/Gelsolin-like domain
Ec32 orthologEc-19_002610.1
Exons3
Model size592
Cds size591
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig13.2195.1prot_F-serratus_M_contig13.2195.1Fucus serratus malepolypeptideF-serratus_M_contig13 539160..540700 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929245.0588558-CDS-F-serratus_M_contig13:539159..5394081622929245.0588558-CDS-F-serratus_M_contig13:539159..539408Fucus serratus maleCDSF-serratus_M_contig13 539160..539408 +
1690962766.8820362-CDS-F-serratus_M_contig13:539159..5394081690962766.8820362-CDS-F-serratus_M_contig13:539159..539408Fucus serratus maleCDSF-serratus_M_contig13 539160..539408 +
1622929245.0806649-CDS-F-serratus_M_contig13:539610..5397801622929245.0806649-CDS-F-serratus_M_contig13:539610..539780Fucus serratus maleCDSF-serratus_M_contig13 539611..539780 +
1690962766.8930464-CDS-F-serratus_M_contig13:539610..5397801690962766.8930464-CDS-F-serratus_M_contig13:539610..539780Fucus serratus maleCDSF-serratus_M_contig13 539611..539780 +
1622929245.1055663-CDS-F-serratus_M_contig13:540528..5407001622929245.1055663-CDS-F-serratus_M_contig13:540528..540700Fucus serratus maleCDSF-serratus_M_contig13 540529..540700 +
1690962766.9034345-CDS-F-serratus_M_contig13:540528..5407001690962766.9034345-CDS-F-serratus_M_contig13:540528..540700Fucus serratus maleCDSF-serratus_M_contig13 540529..540700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig13.2195.1

>prot_F-serratus_M_contig13.2195.1 ID=prot_F-serratus_M_contig13.2195.1|Name=mRNA_F-serratus_M_contig13.2195.1|organism=Fucus serratus male|type=polypeptide|length=197bp
MIAIATGDGAPALAQQLIEVEHGRLGVLYSTDAYLFHFRIQPTRSEGGGE
ERETWKEGEEFHLAYIWLGREAGAGARASVRAQGKRLLERLPRSTPPAPV
APLEVEQGSEPALFLGLFSYMMPPLAAVVHQARQDTPDLRVFELQESPCL
QGAGIALAVEGDASLLAKHGPLPSRSYVILVNPRRRRVGKHSAEGGG
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mRNA from alignment at F-serratus_M_contig13:539160..540700+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig13.2195.1 ID=mRNA_F-serratus_M_contig13.2195.1|Name=mRNA_F-serratus_M_contig13.2195.1|organism=Fucus serratus male|type=mRNA|length=1541bp|location=Sequence derived from alignment at F-serratus_M_contig13:539160..540700+ (Fucus serratus male)
ATGATTGCTATCGCCACAGGCGATGGCGCTCCGGCGCTTGCTCAGCAGCT
CATCGAGGTTGAGCACGGCAGACTCGGCGTCCTGTATTCCACCGACGCTT
ACCTGTTTCACTTCCGAATCCAACCGACGCGGAGCGAGGGTGGGGGCGAG
GAGCGAGAGACTTGGAAGGAGGGAGAGGAGTTCCACTTGGCGTACATTTG
GCTTGGAAGGGAAGCCGGTGCCGGGGCGCGTGCGTCGGTTCGAGCGCAGG
TTGGTTGTCTTATTTGTCTAAACCTGGCATACGAAGCAGGGGGGCGGATG
TTTGGAAAGTTTAAAAGCGTTCATTGTTCCCAGCTCTACACCGACAAAAC
CGATATGACTTGAATTTGGCGTGAAGACCGATCTACGGGTGCTGTAATGA
GCATCGTCAGAAGCGCGGAGCGTGGACGCGCTGATTTACCTCGTTTGGCA
GGGAAAAAGGCTGCTGGAACGACTGCCACGGTCGACCCCTCCGGCCCCGG
TGGCGCCTCTTGAGGTGGAGCAGGGCAGCGAGCCGGCGCTTTTCCTGGGA
CTGTTCTCGTACATGATGCCTCCCCTCGCCGCAGTGGTGCACCAGGCTCG
ACAAGATACACCGGATCTCAGGCGAGCGACTTGATGAAATCGGTCGGTGT
TTGATTAGGGTGCTATTTTTCGATGGAGAGGCATGCAAAATATGCCTTCG
ATCGGGTCGGGGGGGGGTTTACAAGGTATGGATCACGGTCTTCTCGCCAC
GTGGAGGTGAATGCCTGCCTTGCATAACCCAGCGATCTGCTTGGATACTA
CTCTTGTATCGCTGGGAGGGCGCTAGCTACTATTATACAGGGCGGGTTTA
GTTCATCTTCGAACTGCGTTTTGAATACAACAAAAACGACTTCGTTACAA
ATCCGTCGTTTTCGGAGTGCTTGCGAGGTCTGATTGTGCGGTGTCGCACC
ATTTTCGAGCTATTTATTTATAGATATTTGGTATTCAACGACCATCCCTG
TTCCAAAGACGAACGGATGCACCTGAGAAAATACATTTTATTTTTCAAGC
GCTGCCGCATTGTGCCTCAACGGCCCCAAAAGCGCGGGTGGATTGATTGC
CTAGCTTTTCCCGCGGCGTCTGGTCGAACAAGAAATCTATCAACTGCATT
TTACTACGTAGTGTTGATTCGCTTTTTACCGTCACACATGTCGAGGAGAG
CTGAGAGCGCGGTTGAATTGAATCGTCTCCGTCTCGACTCCTGACAGCCC
CAGCAGCCCGACTTTTGACACAACTCTCCCGAGAGAAAAAAATACTCAAG
GCGCTAACGAGTGCCCCCCCGTGCAGATAGCCGCACTGAGTTCGACGCCC
TTGTTCATCGACGACGCAGGGTGTTCGAGCTGCAGGAGAGCCCTTGCCTG
CAGGGAGCAGGCATCGCCCTGGCGGTGGAGGGCGACGCTTCTCTCCTGGC
GAAGCACGGTCCACTGCCCAGCCGAAGCTACGTTATTCTGGTTAATCCCC
GTCGCCGGAGGGTTGGCAAGCACAGCGCCGAGGGAGGAGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig13:539160..540700+

>mRNA_F-serratus_M_contig13.2195.1 ID=mRNA_F-serratus_M_contig13.2195.1|Name=mRNA_F-serratus_M_contig13.2195.1|organism=Fucus serratus male|type=CDS|length=1182bp|location=Sequence derived from alignment at F-serratus_M_contig13:539160..540700+ (Fucus serratus male)
ATGATTGCTATCGCCACAGGCGATGGCGCTCCGGCGCTTGCTCAGCAGCT
CATCGAGGTTGAGCACGGCAGACTCGGCGTCCTGTATTCCACCGACGCTT
ACCTGTTTCACTTCCGAATCCAACCGACGCGGAGCGAGGGTGGGGGCGAG
GAGCGAGAGACTTGGAAGGAGGGAGAGGAGTTCCACTTGGCGTACATTTG
GCTTGGAAGGGAAGCCGGTGCCGGGGCGCGTGCGTCGGTTCGAGCGCAGA
TGATTGCTATCGCCACAGGCGATGGCGCTCCGGCGCTTGCTCAGCAGCTC
ATCGAGGTTGAGCACGGCAGACTCGGCGTCCTGTATTCCACCGACGCTTA
CCTGTTTCACTTCCGAATCCAACCGACGCGGAGCGAGGGTGGGGGCGAGG
AGCGAGAGACTTGGAAGGAGGGAGAGGAGTTCCACTTGGCGTACATTTGG
CTTGGAAGGGAAGCCGGTGCCGGGGCGCGTGCGTCGGTTCGAGCGCAGGG
AAAAAGGCTGCTGGAACGACTGCCACGGTCGACCCCTCCGGCCCCGGTGG
CGCCTCTTGAGGTGGAGCAGGGCAGCGAGCCGGCGCTTTTCCTGGGACTG
TTCTCGTACATGATGCCTCCCCTCGCCGCAGTGGTGCACCAGGCTCGACA
AGATACACCGGATCTCAGGGAAAAAGGCTGCTGGAACGACTGCCACGGTC
GACCCCTCCGGCCCCGGTGGCGCCTCTTGAGGTGGAGCAGGGCAGCGAGC
CGGCGCTTTTCCTGGGACTGTTCTCGTACATGATGCCTCCCCTCGCCGCA
GTGGTGCACCAGGCTCGACAAGATACACCGGATCTCAGGGTGTTCGAGCT
GCAGGAGAGCCCTTGCCTGCAGGGAGCAGGCATCGCCCTGGCGGTGGAGG
GCGACGCTTCTCTCCTGGCGAAGCACGGTCCACTGCCCAGCCGAAGCTAC
GTTATTCTGGTTAATCCCCGTCGCCGGAGGGTTGGCAAGCACAGCGCCGA
GGGAGGAGGGGGTGTTCGAGCTGCAGGAGAGCCCTTGCCTGCAGGGAGCA
GGCATCGCCCTGGCGGTGGAGGGCGACGCTTCTCTCCTGGCGAAGCACGG
TCCACTGCCCAGCCGAAGCTACGTTATTCTGGTTAATCCCCGTCGCCGGA
GGGTTGGCAAGCACAGCGCCGAGGGAGGAGGG
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