mRNA_F-serratus_M_contig13.2187.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig13.2187.1 vs. uniprot
Match: D7FZG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG4_ECTSI) HSP 1 Score: 552 bits (1423), Expect = 2.690e-184 Identity = 328/634 (51.74%), Postives = 372/634 (58.68%), Query Frame = 3
Query: 645 LTRRMSGSGLTEKIGITRIPDRAWTIALDYLELGEASGRAYGMRCRQLGRVFRDIVEASLSVLALSGVKSITWATPENLSFLTRFKNVQTLHWYVGVGRPSDLGEENSDAAGAGAAPEASAASXXXXXXXXXXXXXXXAGGKEKLGGVTREKNVLEVADCNPVRAWAYLLGALPKIEEVIIVEGLETDESALEEVWLHLLPLCRNLRSFFLNFEDYSECPVDGDHPPINVKKFAVFLQARKPFPKLRELHLELGSMSITEQRSLIIGLGMSGLLPQLEKVTLGDGTTSYVRNPGRGPGRDLLTAFKRSPCARLKVLWLQRLDLWDDLESLASALGPEYCPVLEELFLDLALDTDDVVRLANCLHKFPRCLKTLGVLAVAIKDRTTEGQFVNHDPTPALQMLADALANHPRPNLQCLDVSLHYEP-------PDSADDAQPLVLTAPFEPREAVMPIIALFKTGKLTGLKHVQLSGCNLDDKGLLLACQSVATVKGIQTLDLSSNKLSKECAAQLAKALWRCRSLHEIVLEESVEEKDAQEVSSLFKEYMPWATVRVDDRESRRTQGRRSTAVHGQVNNE----AEEQAGGDDFMAENDDGDDNSHASDPADPHHWEDIDAESDGELPPELMADD 2513
++RR SG +++GITRIPDRAWTIALDYLELGE GMRCRQLGR FRD VEASLSVLALSGV +ITWATP+NL+FLTRFKNV+TLHW GG ++ G EK L VADC PVRAW+YLLGAL K LEKVTLGDGTTSYVR+PGRGPGRDL AF+++PCA+L+VLWLQRLDLWDDL++LASALGP +CPVLEELFLDLALDTDDV RLA CLHKFP+ LKTLGVLAVAIK+RT +GQF DP PALQ LADAL HPRP LQCLD+SLHYEP PD + QP PF+ R A MPII L K+GKLTG+KHVQLS C+LDD GL +AC++VAT+ GIQTLD+SSN+LS A LAKALWRCRSLHEIVLEESV D VS++FKEYMPWATVRVDDR+ R+ RR A G A++Q DD D DPHHWE +DAESDGE+PPELM DD
Sbjct: 116 MSRRASGLIFADRVGITRIPDRAWTIALDYLELGE------GMRCRQLGRAFRDTVEASLSVLALSGVNTITWATPDNLAFLTRFKNVRTLHW---------------------------------------------GGGADRYGAAAGEKT-LRVADCCPVRAWSYLLGALTK-----------------------------------------------------------------------------------------------------LEKVTLGDGTTSYVRSPGRGPGRDLFAAFRKTPCAKLRVLWLQRLDLWDDLDALASALGPAHCPVLEELFLDLALDTDDVERLAGCLHKFPKSLKTLGVLAVAIKNRTEDGQFEMADPEPALQRLADALCKHPRPTLQCLDISLHYEPEAEEELPPD--EPPQP----PPFKARAATMPIIRLLKSGKLTGIKHVQLSSCSLDDSGLAIACKAVATMTGIQTLDISSNQLSLTGAKALAKALWRCRSLHEIVLEESVVPDDTAAVSAVFKEYMPWATVRVDDRDGRKNLARRYLAAAGGQGQAYDALADDQGAFDDXXXXXXXXXXXXGGFDLMDPHHWEAVDAESDGEVPPELMMDD 590
BLAST of mRNA_F-serratus_M_contig13.2187.1 vs. uniprot
Match: A0A6H5KYL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYL0_9PHAE) HSP 1 Score: 470 bits (1209), Expect = 1.850e-155 Identity = 251/379 (66.23%), Postives = 287/379 (75.73%), Query Frame = 3
Query: 1410 MSITEQRSLIIGLGMSGLLPQLEKVTLGDGTTSYVRNPGRGPGRDLLTAFKRSPCARLKVLWLQRLDLWDDLESLASALGPEYCPVLEELFLDLALDTDDVVRLANCLHKFPRCLKTLGVLAVAIKDRTTEGQFVNHDPTPALQMLADALANHPRPNLQCLDVSLHYEP-------PDSADDAQPLVLTAPFEPREAVMPIIALFKTGKLTGLKHVQLSGCNLDDKGLLLACQSVATVKGIQTLDLSSNKLSKECAAQLAKALWRCRSLHEIVLEESVEEKDAQEVSSLFKEYMPWATVRVDDRESRRTQGRRSTAVHGQVNNEAEEQAGGDDFMAENDDGDDNSHASDPA----DPHHWEDIDAESDGELPPELMADD 2513
MSI EQRSLI GL SGLLPQLEKVTLGDGTTSYVR+PGRGPGRDL AF+++PC +L+VLWLQRLDLWDDL++LASALGP +CPVLEELFLDLALDTDDV RLA CLHKFP+ LKTLGVLAVAIK+RT +GQF DP PALQ LADAL HPRP LQCLD+SLHYEP PD + QP PF+ R A MPII L K+GKLTG+KHVQLS C+LDD GL +AC++VAT+ GIQTLD+SSN+LS A LAKALWRCRSLHEIVLEESV DA VS++FKEYMPWATVRVDDR+ R+ RR A G + A ++ + GD+N D PHHWE +DAESDGE+PPEL+ DD
Sbjct: 1 MSIAEQRSLIRGLSSSGLLPQLEKVTLGDGTTSYVRSPGRGPGRDLFAAFRKTPCVKLRVLWLQRLDLWDDLDALASALGPAHCPVLEELFLDLALDTDDVERLAGCLHKFPKSLKTLGVLAVAIKNRTQDGQFEMADPEPALQRLADALCKHPRPTLQCLDISLHYEPEAEEELPPD--EPPQP----PPFKARAATMPIIRLLKSGKLTGIKHVQLSSCSLDDSGLAIACKAVATMTGIQTLDISSNQLSLTGAKALAKALWRCRSLHEIVLEESVVPDDAAAVSAVFKEYMPWATVRVDDRDGRKNLARRYLAAAGGQGQAHDAVADDQGAFSDEEGGDNNGQEDDVVFDMMGPHHWEAVDAESDGEVPPELVMDD 373
BLAST of mRNA_F-serratus_M_contig13.2187.1 vs. uniprot
Match: A0A835Z7K9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K9_9STRA) HSP 1 Score: 305 bits (782), Expect = 3.880e-88 Identity = 188/509 (36.94%), Postives = 274/509 (53.83%), Query Frame = 3
Query: 795 VFRDIVEASLSVLALSGVKSIT--WATPENLSFLTRFKNVQTLHWYVGVGRPSDLGEENSDAAGAGAAPEASAASXXXXXXXXXXXXXXXAGGKEKLGGVTREKNVLEVADCNPVRAWAYLLGALPKIEEVIIVEGLETDESALEEVWLHLLPLCR-NLRSFFLNFEDYSECPVDG----DHPPINVKKFAVFLQARKPFPKLRELHLELGSMSITEQRSLIIGLGMSGLLPQLEKVTLGDGTTSYVRNPGRGPGRDLLTAFKRSPCARLKVLWLQRLDLWDDLESLASALG-PEYCPVLEELFLDLALDTDDVVRLANCLHKFPRCLKTLGVLAVAIKDRTTEGQFVNHDPTPALQMLADALANHPRPNLQCLDVSLHYEP-PDSADDAQPLVLTAPFEP-----REAVMPIIALFKTGKLTGLKHVQLSGCNLDDKGLLLACQSVATVKGIQTLDLSSNKLSKECAAQLAKALWRC-RSLHEIVLEESVE-EKDAQEVSSLFKEYMP 2273
V +D+ E + +A+ + ++ W +P L+ L +F+ V+ LHW VG+ + G E G E+ TR + L P+ W YLL LP + +V I EG T+E ALEE+W +LPLC LR L+FE Y+ ++G DHPP+NVK AV L +PFP LRELHLEL SMSITEQRSL+ GLG G+L +LE +T+G GT++Y R P +GPG+DL A + L +LWLQRLD+WDD E + ALG P CP L +L+LDL LD +D LA LH P LKTLG++ + I R +G F P ++++A A+ HPR +L+C+D+ LHYE PD ++ +P+ P P R +P++ + L H+QL C L K + A + +QTLD+S N++S+ +L AL ++EI+ EE V+ +++A +++L + P
Sbjct: 133 VSKDVRERACETMAVMSLNTLKGDWVSPAALASLCKFRRVKALHWCVGMDEEEEEGSE----------------------------------GHER----TRPEEWLG----RPLMVWTYLLARLP-LTDVTITEGPATNEQALEELWERVLPLCAPTLRRLALSFEGYAAREMEGEQDVDHPPVNVKHLAVVLARDRPFPHLRELHLELNSMSITEQRSLVRGLGQGGVLQRLESLTIGGGTSAYAR-PAKGPGKDLAAAITKHGAPNLSLLWLQRLDIWDDFEGVFRALGDPALCPSLRQLYLDLTLDIEDSKALAAALHLCPPSLKTLGMMVMGITARDDQGNFKRCSPEAGVEVIAKAMLAHPRDDLECVDLCLHYEDAPDDNEEPEPIDPAHPPPPPGLSQRRDAVPLLEALRGAAAPRLLHLQLPNCRLTGKAFSEVLSTAAALPRLQTLDISGNEMSEVLVEELVAALTTSVPHVYEIMAEECVKTDEEANTLAALCRARAP 597
BLAST of mRNA_F-serratus_M_contig13.2187.1 vs. uniprot
Match: A0A835YQN0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQN0_9STRA) HSP 1 Score: 273 bits (699), Expect = 1.320e-75 Identity = 175/490 (35.71%), Postives = 241/490 (49.18%), Query Frame = 3
Query: 705 DRAWTIALDYLELGEASGRAYGMRCRQLGRVFRDIVEASLSVLALSGVKSITWATPENLSFLTRFKNVQTLHWYVGVGRPSDLGEENSDAAGAGAAPEASAASXXXXXXXXXXXXXXXAGGKEKLGGVTREKNVLEVADCN-----PVRAWAYLLGALPKIEEVIIVEGLETDESALEEVWLHLLPLCR-NLRSFFLNFEDYSECPVDGD--------------------------HPPINVKKFAVFLQARKPFPKLRELHLELGSMSITEQRSLIIGLGMSGLLPQLEKVTLGDGTTSYVRNPGRGPGRDLLTAFKRSPCARLKVLWLQRLDLWDDLESLASALGPE-YCPVLEELFLDLALDTDDVVRLANCLHKFPRCLKTLGVLAVAIKDRTTEGQFVNHDPTPALQMLADALANHPRPNLQCLDVSLHYEPPDSAD------DAQPLVLTAPFEPREAVMPIIALFKTGKLTGLKHVQLSGCNL 2057
D W +ALD+L+L + + + R +++VL+L GV+ W P L+ +TRF+ V+TLHW VG A A PE + GG R+ P+ W +LL LP ++ V I G+ DE AL E+W +LP C LR F L FE Y P GD +PPINVK+FA+ L R PFP LRELHLEL SMSI+EQRSL+ G+ GLL +LE +T+G GT+ Y R P G G++L TA + L++LWLQR D+WDD + SAL CP L+EL++D LD DD + LA L P CLKTLG++ +A+++R G F P PA+ +A AL RP L C+D+ LH+EPP + D P A P +A +P++ F+ G + ++H+QL C L
Sbjct: 161 DAGWALALDFLDLHDV------VAVTRTARELAHRAHETMTVLSLHGVRG-GWVGPHALAAITRFRRVRTLHWCVG-------------ALPAPPPPETPLVEPEDGEETYESRRHRC---QSSSGGAARDDESRRHCPAQQWYGEPLMVWTFLLARLPLLD-VTITPGVANDEDALGELWERVLPACAPQLRRFALAFEGYQPPPPQGDXXXXXXXXXXXXXXXXXPSDQPPPIDYPPINVKRFALMLATRNPFPALRELHLELSSMSISEQRSLVRGITQGGLLARLECLTMGGGTSVYAR-PKIGAGQELATALREHGAPNLRLLWLQRFDVWDDFPGVFSALSDRTLCPALKELYIDATLDHDDTLALAAALPLVPTCLKTLGMMVMALRERDHLGYFKRVSPVPAVTAIATALLEAQRPQLGCVDLCLHFEPPQEGETDEWYSDELPPPPPADKSPVDASIPLLRAFQAGAVPNMRHLQLPNCRL 625
BLAST of mRNA_F-serratus_M_contig13.2187.1 vs. uniprot
Match: A0A6H5L111_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L111_9PHAE) HSP 1 Score: 129 bits (324), Expect = 4.170e-30 Identity = 96/228 (42.11%), Postives = 117/228 (51.32%), Query Frame = 3
Query: 156 MSSRGRPSLSGTPGRSSLGASPSEVDLTQLRTLLQSARDLPCFQQTRPECQGMIDDVLTNCLPMAAMAEASVSTP--RADSAGPSSASGMLRSKFRAHARRLATTSADSTVRQQHFSDMS--------VDGLDTDGIPCRKQLEA--DFSPLGGVPPMPCGKWGSVTGTP-------------TRGSQLTRRMSGSGLTEKIGITRIPDRAWTIALDYLELGEASGRA 764
MS RGRPSLSGTPGRSSL S +DL +LR L +AR+L CFQ RP+CQ MIDDVLT+CLP+AAMAE + + P R +A SA+ A + T + V +D D P KQ+ S +GG G+ GS L+RR SGS +++GITRIPDRAWTIALDYLELGE G A
Sbjct: 1 MSFRGRPSLSGTPGRSSLEPSSDSLDLAKLRADLVAARELTCFQ-ARPDCQSMIDDVLTSCLPLAAMAEFTSAAPAARLGAAAADSAAEXXXXXXPVDASVVPLTRTPAXXXXXXXXXXXXXXXXXXXVSSMDWDPSPTSKQIAMPPSSSSIGGG----AGRGGSXVSRSGXXXXXXXXXXXXXXXGVLSRRASGSIFADRVGITRIPDRAWTIALDYLELGEVGGMA 223 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig13.2187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig13.2187.1 >prot_F-serratus_M_contig13.2187.1 ID=prot_F-serratus_M_contig13.2187.1|Name=mRNA_F-serratus_M_contig13.2187.1|organism=Fucus serratus male|type=polypeptide|length=792bp MSSRGRPSLSGTPGRSSLGASPSEVDLTQLRTLLQSARDLPCFQQTRPECback to top mRNA from alignment at F-serratus_M_contig13:393104..409813- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig13.2187.1 ID=mRNA_F-serratus_M_contig13.2187.1|Name=mRNA_F-serratus_M_contig13.2187.1|organism=Fucus serratus male|type=mRNA|length=16710bp|location=Sequence derived from alignment at F-serratus_M_contig13:393104..409813- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig13:393104..409813- >mRNA_F-serratus_M_contig13.2187.1 ID=mRNA_F-serratus_M_contig13.2187.1|Name=mRNA_F-serratus_M_contig13.2187.1|organism=Fucus serratus male|type=CDS|length=4752bp|location=Sequence derived from alignment at F-serratus_M_contig13:393104..409813- (Fucus serratus male)back to top |