mRNA_F-serratus_M_contig13.2207.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig13.2207.1
Unique NamemRNA_F-serratus_M_contig13.2207.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig13.2207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig13contigF-serratus_M_contig13:759452..760973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1522
Cds size828
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig13.2207.1prot_F-serratus_M_contig13.2207.1Fucus serratus malepolypeptideF-serratus_M_contig13 759975..760802 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929240.9698784-UTR-F-serratus_M_contig13:759451..7599741622929240.9698784-UTR-F-serratus_M_contig13:759451..759974Fucus serratus maleUTRF-serratus_M_contig13 759452..759974 +
1690962765.3593159-UTR-F-serratus_M_contig13:759451..7599741690962765.3593159-UTR-F-serratus_M_contig13:759451..759974Fucus serratus maleUTRF-serratus_M_contig13 759452..759974 +
1622929240.9977567-UTR-F-serratus_M_contig13:760802..7609731622929240.9977567-UTR-F-serratus_M_contig13:760802..760973Fucus serratus maleUTRF-serratus_M_contig13 760803..760973 +
1690962765.3759108-UTR-F-serratus_M_contig13:760802..7609731690962765.3759108-UTR-F-serratus_M_contig13:760802..760973Fucus serratus maleUTRF-serratus_M_contig13 760803..760973 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929240.9803221-CDS-F-serratus_M_contig13:759974..7608021622929240.9803221-CDS-F-serratus_M_contig13:759974..760802Fucus serratus maleCDSF-serratus_M_contig13 759975..760802 +
1690962765.3679416-CDS-F-serratus_M_contig13:759974..7608021690962765.3679416-CDS-F-serratus_M_contig13:759974..760802Fucus serratus maleCDSF-serratus_M_contig13 759975..760802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig13.2207.1

>prot_F-serratus_M_contig13.2207.1 ID=prot_F-serratus_M_contig13.2207.1|Name=mRNA_F-serratus_M_contig13.2207.1|organism=Fucus serratus male|type=polypeptide|length=276bp
MELREPVRESLWHSYRVIHPTTLEEAEESTRVVEAIAKAREELADRKAKE
IFLQEFENKEKIARGRLEEAADSMWRHDRMLGITEDRIAKVGAALKGLKA
EVESAISQQREEYQHFVKDAKDWRAEEARSKHKFRTTFRQVWTRPPVEMP
ELPPSIKNRSEAPRPAESHGAPARATGAVAESAEVSAWVGSSSERRPQEA
RRTPQPRGERIKFIDRSNTLGRWKIYSLRELGSAPYKEQMEPSAQRAIRE
LNRTTKEDLSWRSSFPGLMDIQEAM*
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mRNA from alignment at F-serratus_M_contig13:759452..760973+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig13.2207.1 ID=mRNA_F-serratus_M_contig13.2207.1|Name=mRNA_F-serratus_M_contig13.2207.1|organism=Fucus serratus male|type=mRNA|length=1522bp|location=Sequence derived from alignment at F-serratus_M_contig13:759452..760973+ (Fucus serratus male)
AGCGAGTCTCGATCGAGGGACACTTCAATCGCTTTGAGGATCTTCAGGGA
AAGCGAGTCTCGATCGAGGGACACTTCGTTCGCTTGGGAACCTGAAGGCC
GTAATGGCATCGACCCGGAGAACGTCAGAGAGGAAAGGGACGGCCGCAGC
CAGATTGGGCGCGGGAACCGACAGCGACGGAGGGTCCCCGAAATCCACTC
AGCGGGAACGATCCGCGACTCCGGAGACGCCACCGAGCGTCGAGGAAACG
AGTGGGGGTGACACTTCGAAAGACAGTGCGGGGAAAATGCCCGCTATCTC
GGAAGCGAGCGGGACGGAGGATTCGGTGGCCGCCGCTAGGAACTCTGCCG
AGCGCCCCGTGAAGAGACCGCCGGGAACAAGAAAGTAGTCAGCTGTGAGC
GAGGAGAGGTCAGATGAGGTAGAGTTCAGCGAGTTCCTCTCACCACCAGA
AGTCAGATCCTTCGAGGAGACAGAGAAACTGGAGACCCCACCCCCCGATT
TCAAGCTAGGCTTGGAATGGTGGATGGAGTTGCGAGAGCCGGTCCGCGAA
TCACTGTGGCACTCATACCGAGTAATCCACCCCACCACCCTTGAGGAAGC
TGAGGAATCTACGAGGGTGGTCGAGGCGATCGCGAAGGCCAGGGAGGAGC
TGGCGGACCGCAAGGCCAAGGAGATTTTCCTACAGGAATTTGAGAACAAG
GAGAAAATCGCCCGGGGCCGCCTCGAGGAAGCAGCCGACAGCATGTGGAG
GCACGACCGGATGCTGGGTATCACGGAAGACCGCATCGCGAAAGTGGGGG
CGGCGCTTAAGGGCCTGAAGGCGGAAGTGGAGTCTGCCATTTCTCAACAG
CGCGAAGAATACCAACACTTCGTGAAGGACGCCAAGGACTGGCGGGCGGA
GGAGGCCCGATCGAAACATAAATTTAGAACTACGTTTCGGCAGGTATGGA
CGCGGCCTCCCGTGGAAATGCCCGAGCTGCCTCCATCGATCAAGAACAGG
AGCGAGGCTCCGAGGCCGGCCGAGTCCCATGGTGCACCGGCGCGGGCGAC
TGGCGCCGTAGCAGAGAGCGCGGAGGTGTCAGCTTGGGTGGGCTCCTCGT
CGGAGCGTCGCCCACAGGAAGCCAGGCGGACGCCCCAGCCTAGGGGCGAG
CGCATCAAATTCATCGATCGCTCCAACACGTTAGGCAGGTGGAAAATTTA
CTCTTTGCGGGAACTCGGATCCGCTCCATATAAGGAGCAGATGGAACCGT
CAGCCCAGAGAGCCATCAGGGAGCTGAACCGCACGACGAAGGAAGACCTA
TCCTGGAGGAGCAGCTTCCCGGGGCTGATGGACATACAGGAGGCTATGTA
AAGGAGGTGTGGGAACACATGGAGAAATATTATCAAGCACTTCATCAGGC
TGTCGGGAACGCTCTCCAGAATCTTGCACGTACGACTCCCAGAGGGACCC
CCGAGGGCAGGAACGAGCACCAGCGCCAGGATCGATCTCCACCGAGGAAA
TACTCGTACAGAGGTGAGCTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig13:759452..760973+

>mRNA_F-serratus_M_contig13.2207.1 ID=mRNA_F-serratus_M_contig13.2207.1|Name=mRNA_F-serratus_M_contig13.2207.1|organism=Fucus serratus male|type=CDS|length=1656bp|location=Sequence derived from alignment at F-serratus_M_contig13:759452..760973+ (Fucus serratus male)
ATGGAGTTGCGAGAGCCGGTCCGCGAATCACTGTGGCACTCATACCGAGT
AATCCACCCCACCACCCTTGAGGAAGCTGAGGAATCTACGAGGGTGGTCG
AGGCGATCGCGAAGGCCAGGGAGGAGCTGGCGGACCGCAAGGCCAAGGAG
ATTTTCCTACAGGAATTTGAGAACAAGGAGAAAATCGCCCGGGGCCGCCT
CGAGGAAGCAGCCGACAGCATGTGGAGGCACGACCGGATGCTGGGTATCA
CGGAAGACCGCATCGCGAAAGTGGGGGCGGCGCTTAAGGGCCTGAAGGCG
GAAGTGGAGTCTGCCATTTCTCAACAGCGCGAAGAATACCAACACTTCGT
GAAGGACGCCAAGGACTGGCGGGCGGAGGAGGCCCGATCGAAACATAAAT
TTAGAACTACGTTTCGGCAGGTATGGACGCGGCCTCCCGTGGAAATGCCC
GAGCTGCCTCCATCGATCAAGAACAGGAGCGAGGCTCCGAGGCCGGCCGA
GTCCCATGGTGCACCGGCGCGGGCGACTGGCGCCGTAGCAGAGAGCGCGG
AGGTGTCAGCTTGGGTGGGCTCCTCGTCGGAGCGTCGCCCACAGGAAGCC
AGGCGGACGCCCCAGCCTAGGGGCGAGCGCATCAAATTCATCGATCGCTC
CAACACGTTAGGCAGGTGGAAAATTTACTCTTTGCGGGAACTCGGATCCG
CTCCATATAAGGAGCAGATGGAACCGTCAGCCCAGAGAGCCATCAGGGAG
CTGAACCGCACGACGAAGGAAGACCTATCCTGGAGGAGCAGCTTCCCGGG
GCTGATGGACATACAGGAGGCTATGTAAATGGAGTTGCGAGAGCCGGTCC
GCGAATCACTGTGGCACTCATACCGAGTAATCCACCCCACCACCCTTGAG
GAAGCTGAGGAATCTACGAGGGTGGTCGAGGCGATCGCGAAGGCCAGGGA
GGAGCTGGCGGACCGCAAGGCCAAGGAGATTTTCCTACAGGAATTTGAGA
ACAAGGAGAAAATCGCCCGGGGCCGCCTCGAGGAAGCAGCCGACAGCATG
TGGAGGCACGACCGGATGCTGGGTATCACGGAAGACCGCATCGCGAAAGT
GGGGGCGGCGCTTAAGGGCCTGAAGGCGGAAGTGGAGTCTGCCATTTCTC
AACAGCGCGAAGAATACCAACACTTCGTGAAGGACGCCAAGGACTGGCGG
GCGGAGGAGGCCCGATCGAAACATAAATTTAGAACTACGTTTCGGCAGGT
ATGGACGCGGCCTCCCGTGGAAATGCCCGAGCTGCCTCCATCGATCAAGA
ACAGGAGCGAGGCTCCGAGGCCGGCCGAGTCCCATGGTGCACCGGCGCGG
GCGACTGGCGCCGTAGCAGAGAGCGCGGAGGTGTCAGCTTGGGTGGGCTC
CTCGTCGGAGCGTCGCCCACAGGAAGCCAGGCGGACGCCCCAGCCTAGGG
GCGAGCGCATCAAATTCATCGATCGCTCCAACACGTTAGGCAGGTGGAAA
ATTTACTCTTTGCGGGAACTCGGATCCGCTCCATATAAGGAGCAGATGGA
ACCGTCAGCCCAGAGAGCCATCAGGGAGCTGAACCGCACGACGAAGGAAG
ACCTATCCTGGAGGAGCAGCTTCCCGGGGCTGATGGACATACAGGAGGCT
ATGTAA
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