mRNA_F-serratus_M_contig13.2184.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig13.2184.1
Unique NamemRNA_F-serratus_M_contig13.2184.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig13.2184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig13contigF-serratus_M_contig13:294078..297851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size389
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig13.2184.1prot_F-serratus_M_contig13.2184.1Fucus serratus malepolypeptideF-serratus_M_contig13 294078..297681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929240.1254382-CDS-F-serratus_M_contig13:294077..2941131622929240.1254382-CDS-F-serratus_M_contig13:294077..294113Fucus serratus maleCDSF-serratus_M_contig13 294078..294113 -
1690962764.9766407-CDS-F-serratus_M_contig13:294077..2941131690962764.9766407-CDS-F-serratus_M_contig13:294077..294113Fucus serratus maleCDSF-serratus_M_contig13 294078..294113 -
1622929240.1709917-CDS-F-serratus_M_contig13:294501..2946411622929240.1709917-CDS-F-serratus_M_contig13:294501..294641Fucus serratus maleCDSF-serratus_M_contig13 294502..294641 -
1690962764.987353-CDS-F-serratus_M_contig13:294501..2946411690962764.987353-CDS-F-serratus_M_contig13:294501..294641Fucus serratus maleCDSF-serratus_M_contig13 294502..294641 -
1622929240.1900303-CDS-F-serratus_M_contig13:297638..2976811622929240.1900303-CDS-F-serratus_M_contig13:297638..297681Fucus serratus maleCDSF-serratus_M_contig13 297639..297681 -
1690962764.9971538-CDS-F-serratus_M_contig13:297638..2976811690962764.9971538-CDS-F-serratus_M_contig13:297638..297681Fucus serratus maleCDSF-serratus_M_contig13 297639..297681 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929240.2020998-UTR-F-serratus_M_contig13:297681..2978511622929240.2020998-UTR-F-serratus_M_contig13:297681..297851Fucus serratus maleUTRF-serratus_M_contig13 297682..297851 -
1690962765.005986-UTR-F-serratus_M_contig13:297681..2978511690962765.005986-UTR-F-serratus_M_contig13:297681..297851Fucus serratus maleUTRF-serratus_M_contig13 297682..297851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig13.2184.1

>prot_F-serratus_M_contig13.2184.1 ID=prot_F-serratus_M_contig13.2184.1|Name=mRNA_F-serratus_M_contig13.2184.1|organism=Fucus serratus male|type=polypeptide|length=73bp
MAVARPRAVGGERDHAWDALEKRLECFQLMIVSDMPRAIAEADGSPQNVE
KIAATIKSAYERTKKHIQEMRLT
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mRNA from alignment at F-serratus_M_contig13:294078..297851-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig13.2184.1 ID=mRNA_F-serratus_M_contig13.2184.1|Name=mRNA_F-serratus_M_contig13.2184.1|organism=Fucus serratus male|type=mRNA|length=3774bp|location=Sequence derived from alignment at F-serratus_M_contig13:294078..297851- (Fucus serratus male)
CTTGTGGCATCCTATACCTTCGCTCTAACGTTCGCTGAAGATCAGACTCA
ACGTACTATACAAGCCCGGTTGTACTTTTTCTGGCGACTCATTCCGAATC
CATTGCTCCGGCAACCAGTGAAACTCTCCAGCAACATCAATCTAAAGGAT
TGGAGGCGGCTCAGGGAGACATGGCCGTCGCTCGACCGAGGGCGGTTGGC
GGGGAGCGAGACCGTGAGTACATATTTCCAGACAATAAGCGACTCTTTTG
AGCTGTGCGAAATCTGTGGGGATCGGACAATGTGGCAAGTTAGGTGGCTT
TCCCGTTACTCTCAAGTCTGCGTGACTCCTCCCTTTGTAATAATTATACT
GTACTACTCTGTACTGTACTGGTAATTCAGAGCCTGTCGTGCAGTACGTT
TTGTAACACGATCCTGGGACGCGTTTCACGTACATTGGGTATGAATGGTT
TACTCCACGAGTGTAGCAGGCGCTCGGAGGGATCTTCTAATGTTTGAAGA
AAAATATCTACCGCAAAGCTTCATAAAGTAGCATCCACCAAGCCAGGGGA
GGAAATTGCAAAATGTTTAGATGGGAACATTGGTTGCTAAAACAAAAACT
CTTCATGCGATTGAATCGGGTTCCAATGGTAGCACACTGTAACCTCGTTG
CCGACAGCTTTTCTACACAGTACTGAGGAAACCCCATCCCTCCCTCCCGC
GTCTCTGTACAGTAGTAGTAGTAGTCGCTCTTTCCCAAGATTCCGAAATC
TAGTCTCGTGGCGACAACGCACATGCAGCGCTGAAAGAGCGTTCAAGCCA
TGTAGAGGTAGACTGTGCATTTGGTTGCCGGAAATGCTGAATGGAAATCG
TACGCTACTTCCGCAACCCTGTTGCACACTGTAGGCCTAGATCTATACTC
GTAGCACATGTCCACTACCGGTTGTACCATTGCTATATCTCTCTATTAAA
AAGTAAGTCTCGGAAACGCAGGATGCATATTTTTTCGTCTATCTGGTTGC
CTTAATAGGCAGCGCCCGTTATTCGATCTATTAATACAAATAATACCTTG
GGGACTACCGCCGGCCTTGCTGTTGCACCGGCGGACTCTCCGCGGCAAAC
GCTTTCGGTACGCAATTGCGTGACTCGATAAACTTGGGACTGAATCGATG
GTGGTTGACGGTATAGATGGGACGCCTTAGTCGCGGACAGCGGAAGGAAT
GAGAGGAGCCCGTGAGTAAGCACCAGATTCAGCTTGGGTTAGGAGAATGA
GCGGGTTGGCGCCGGACGTGACGGCCGAGCCTGTGTCGGGAGACCATGTT
CTGAGGCGTGGACGGGGACAAGGGAAAATTATTTTCCCTGTTCAGCTAAC
CACGAGCAGAATTGGCAGCCATGCCGGTTGATCCGTACACTCTGGTCGAA
GCAATCTTCCGTTCCTGCCTCACACACAAGCTGGTTTCCGCTTTGGGTGA
CGAGCCACGCTTGCCGCGATGATTCGACACCAACAGCCGACGAGGCAAAC
GGGTTAAAAGCTGCAGCAGTACAGCATTAGTATTAGTATTATTATTAATA
TTAATACAGTATTGATAGAGCTAGACTGGAATGATTAGGATTGGTCTCGT
ATCGGGTTGCTCTCTTCTCAGCAGGCCGGCGACAAGTTCGCAAATACTAA
CAGTTTCCACTGTTTGACCTTTTGAGCTCGAGACTCCGCGTTATGAAGAG
GTTCAATATTCTTACGGCGGTAACTCCATAGATGATAATAGGTCGAGTCG
ACGATTTCCCAAAACCCACGGTTAGCAGTGTGTAGATGTACTTGGAAAGC
TATAGGTATGTATGTATGGTCATTACATATGTGTATGTACGTATTATCGG
TATCCCAACAGTAACCTCGACCTCGCGAGCGCCATGCTAGAATCCTTCGA
GGACAACACCAGCGCTCGGGAGACTGTAACCCCGACGGACGACAACGGCG
TGGTACAAATCGTGTCGAGCGCGATCCTTCAAGCCGATGACTCCAAACTC
TCAGACGTCCCGATCGATCGCCTGTTAGCGCTTCTACTCGATGCTTGTGA
GAACGCCGTCCCACGGGAAGGTGCTAACGAGGACCGCGGCCTCGTCACAG
CGCTGTTGGCCGCCAACGAAGGCGGCGAAGTTTAGAGCCATCGGTTCGGG
GGATCGTGCTCGGCACGATTTGTACCACGCCGTTGTCGTCCGTCGTGGTT
ATGGTCTCCCGAGCGCTGGCGTTGTCCTCGAAGGATTCTAGCATGGCGCT
CGCGAGGTCGACACGCGTGGCGGACGAAGCCATGGCGGTGCTTGAAGGGC
GAATTGGTGGTTGACGTGGAAAGTTAAAAATTCCGTCGAGGTTCCCATAG
CTTGTAGCTTCTTGGAAGCGCGTGTGAGCGGTGATCGTGGGCGAGTGCCG
CGAGGCGAGCGCCCTTTACGAGTACAGTATAACACAGTATATAACATACA
CACATAAGTATCATTGATACCCCTTGAGAGGATCTATGCGAGTGGCATAG
AATGACTAGGATGATAGTGCCGGATTGCGCGGTTATGTGCAATTTAATAA
ATACACACACAAACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACAAGAGAAGTATACCTTATACCGCA
GGCTTGCGGTTTTTCCGTGTCGACTCGAGGTCAGAATTGGGAGCCAGACA
GCGTGGAGATCCCCTAGACCGTTTATCATCCAGAATCCTTTCCGGAAACT
TGGCCTCTCTGTGGTCCATACTATTACTATTAATAATGATAATGACCTCA
TGAACGAAAGGCAGCTCGGGGACTTCCATATCAGAGCTTCCACGTTACTG
CGAGTATACGCGCATGTTGCCTTGGGTGTGTGCAGTTACACTCTTGACAG
TTTTAGATGTTAATTGTCCGCTCTTTCCCTCGCTGTCCGACAGGCTCTTT
ATCCCTCTCTCTCTCTCTCTATATATATATATACTTGTCTGTTTGTTTTG
AGTATCGCGGGTGCGGGTATCGATCGCTTCCGTCACCCTCGTTTCAAGTT
TGAACCTGTTGCTCGTATTAGCACAAGGGATGCATCAGGCAACACAAAAC
GGTTCAATATCACAATGTTGTTAGTATAGCATAGCACGGCATGGCGTTGT
CGTCCCGTCATCAACAGTCCCCGCCGCCGCATTGTGCACCCGGACCTGTT
TTTGTGGCAGACGCGTGGGATGCCCTTGAGAAACGGCTGGAGTGCTTCCA
GCTCATGATCGTCTCCGACATGCCGCGCGCCATCGCGGAGGCTGACGGCT
CCCCCCAAAACGTGGAAAAAATTGCCGCCACGATCAAATCGGCGTACGAG
GTGAAATGGCGCGTCCAGGGTGCAACGCCAGCTGCTCGCATCCTCTTGAG
AGTCGCGTGCCATTGGTTTCCATTCAGTAAATGCCCGGTTTGCGTTTCCC
ACGAATGTTGACTTCCCGGGAGGACAATAACCCCACAGCTGCTTCTACAG
TAGCAGATGACTCCGCCAAGTCCAACGATGCCTCATGATAAGCGGCTCTA
GTCCGTCCTCCAACCGATCAGAACTGAGAGTGAGCGTTAGGGTGCTTGAT
GAAGGGCTATTAATAGTAAGGCTGCAGGTGATTCTGCCGCCACTGCTCGC
CGTATCTTCCCGCGTTCCTCACCTCACCCTTATCCCTTTCCCTGACGGTC
GGGCAATGACAACAACAAAAACGAACGAACGAACGCAGAGAACAAAGAAG
CACATTCAGGAGATGCGATTAACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig13:294078..297851-

>mRNA_F-serratus_M_contig13.2184.1 ID=mRNA_F-serratus_M_contig13.2184.1|Name=mRNA_F-serratus_M_contig13.2184.1|organism=Fucus serratus male|type=CDS|length=438bp|location=Sequence derived from alignment at F-serratus_M_contig13:294078..297851- (Fucus serratus male)
ATGGCCGTCGCTCGACCGAGGGCGGTTGGCGGGGAGCGAGACCATGGCCG
TCGCTCGACCGAGGGCGGTTGGCGGGGAGCGAGACCACGCGTGGGATGCC
CTTGAGAAACGGCTGGAGTGCTTCCAGCTCATGATCGTCTCCGACATGCC
GCGCGCCATCGCGGAGGCTGACGGCTCCCCCCAAAACGTGGAAAAAATTG
CCGCCACGATCAAATCGGCGTACGAGACGCGTGGGATGCCCTTGAGAAAC
GGCTGGAGTGCTTCCAGCTCATGATCGTCTCCGACATGCCGCGCGCCATC
GCGGAGGCTGACGGCTCCCCCCAAAACGTGGAAAAAATTGCCGCCACGAT
CAAATCGGCGTACGAGAGAACAAAGAAGCACATTCAGGAGATGCGATTAA
CGAGAACAAAGAAGCACATTCAGGAGATGCGATTAACG
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