mRNA_F-serratus_M_contig1298.2176.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1298.2176.1
Unique NamemRNA_F-serratus_M_contig1298.2176.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1298.2176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1298contigF-serratus_M_contig1298:138962..139519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size558
Cds size552
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929239.4170225-UTR-F-serratus_M_contig1298:138961..1389671622929239.4170225-UTR-F-serratus_M_contig1298:138961..138967Fucus serratus maleUTRF-serratus_M_contig1298 138962..138967 +
1690962764.5882902-UTR-F-serratus_M_contig1298:138961..1389671690962764.5882902-UTR-F-serratus_M_contig1298:138961..138967Fucus serratus maleUTRF-serratus_M_contig1298 138962..138967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929239.4320364-CDS-F-serratus_M_contig1298:138967..1395191622929239.4320364-CDS-F-serratus_M_contig1298:138967..139519Fucus serratus maleCDSF-serratus_M_contig1298 138968..139519 +
1690962764.6009226-CDS-F-serratus_M_contig1298:138967..1395191690962764.6009226-CDS-F-serratus_M_contig1298:138967..139519Fucus serratus maleCDSF-serratus_M_contig1298 138968..139519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1298.2176.1prot_F-serratus_M_contig1298.2176.1Fucus serratus malepolypeptideF-serratus_M_contig1298 138968..139519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1298.2176.1

>prot_F-serratus_M_contig1298.2176.1 ID=prot_F-serratus_M_contig1298.2176.1|Name=mRNA_F-serratus_M_contig1298.2176.1|organism=Fucus serratus male|type=polypeptide|length=184bp
MIEAFCAMVGMLILIGGGIWSEAVISVGIGFAAMFVTGTVTVLYRGSGAL
MVAYIAELMIEVTLPFAVDKISWAVVLVSASALLETIELMIVAERLIRAR
ETRPGNISDLYHSVSVDEWAKSLTVSSGLYFAFFGDRFEPVHGRGIAIPV
ASRSSVVAELSTSSGSNANLHCEGVTYAGAVMTV
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mRNA from alignment at F-serratus_M_contig1298:138962..139519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1298.2176.1 ID=mRNA_F-serratus_M_contig1298.2176.1|Name=mRNA_F-serratus_M_contig1298.2176.1|organism=Fucus serratus male|type=mRNA|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig1298:138962..139519+ (Fucus serratus male)
GTCTTAATGATCGAGGCTTTCTGTGCCATGGTAGGAATGTTGATTCTAAT
TGGAGGGGGTATCTGGAGTGAAGCTGTGATAAGCGTGGGGATAGGATTCG
CTGCAATGTTTGTGACTGGGACTGTCACCGTACTGTATCGTGGGTCGGGA
GCTTTGATGGTTGCGTACATTGCAGAGCTCATGATTGAAGTGACACTGCC
GTTTGCAGTTGACAAAATATCCTGGGCGGTGGTCCTCGTCTCTGCATCAG
CCTTACTCGAGACGATTGAGTTGATGATAGTGGCCGAGAGACTGATACGG
GCCAGAGAGACTAGGCCCGGCAATATTTCCGACCTTTACCACAGTGTCAG
CGTGGACGAGTGGGCGAAAAGCTTAACCGTATCCTCTGGCCTTTATTTTG
CTTTCTTTGGTGACAGATTCGAACCCGTTCACGGACGTGGGATTGCGATA
CCCGTGGCATCACGGTCTTCTGTTGTAGCTGAATTGTCAACCTCGAGTGG
CTCAAACGCCAACTTGCATTGCGAGGGTGTAACATATGCCGGCGCAGTGA
TGACGGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1298:138962..139519+

>mRNA_F-serratus_M_contig1298.2176.1 ID=mRNA_F-serratus_M_contig1298.2176.1|Name=mRNA_F-serratus_M_contig1298.2176.1|organism=Fucus serratus male|type=CDS|length=1104bp|location=Sequence derived from alignment at F-serratus_M_contig1298:138962..139519+ (Fucus serratus male)
ATGATCGAGGCTTTCTGTGCCATGGTAGGAATGTTGATTCTAATTGGAGG
GGGTATCTGGAGTGAAGCTGTGATAAGCGTGGGGATAGGATTCGCTGCAA
TGTTTGTGACTGGGACTGTCACCGTACTGTATCGTGGGTCGGGAGCTTTG
ATGGTTGCGTACATTGCAGAGCTCATGATTGAAGTGACACTGCCGTTTGC
AGTTGACAAAATATCCTGGGCGGTGGTCCTCGTCTCTGCATCAGCCTTAC
TCGAGACGATTGAGTTGATGATAGTGGCCGAGAGACTGATACGGGCCAGA
GAGACTAGGCCCGGCAATATTTCCGACCTTTACCACAGTGTCAGCGTGGA
CGAGTGGGCGAAAAGCTTAACCGTATCCTCTGGCCTTTATTTTGCTTTCT
TTGGTGACAGATTCGAACCCGTTCACGGACGTGGGATTGCGATACCCGTG
GCATCACGGTCTTCTGTTGTAGCTGAATTGTCAACCTCGAGTGGCTCAAA
CGCCAACTTGCATTGCGAGGGTGTAACATATGCCGGCGCAGTGATGACGG
TGATGATCGAGGCTTTCTGTGCCATGGTAGGAATGTTGATTCTAATTGGA
GGGGGTATCTGGAGTGAAGCTGTGATAAGCGTGGGGATAGGATTCGCTGC
AATGTTTGTGACTGGGACTGTCACCGTACTGTATCGTGGGTCGGGAGCTT
TGATGGTTGCGTACATTGCAGAGCTCATGATTGAAGTGACACTGCCGTTT
GCAGTTGACAAAATATCCTGGGCGGTGGTCCTCGTCTCTGCATCAGCCTT
ACTCGAGACGATTGAGTTGATGATAGTGGCCGAGAGACTGATACGGGCCA
GAGAGACTAGGCCCGGCAATATTTCCGACCTTTACCACAGTGTCAGCGTG
GACGAGTGGGCGAAAAGCTTAACCGTATCCTCTGGCCTTTATTTTGCTTT
CTTTGGTGACAGATTCGAACCCGTTCACGGACGTGGGATTGCGATACCCG
TGGCATCACGGTCTTCTGTTGTAGCTGAATTGTCAACCTCGAGTGGCTCA
AACGCCAACTTGCATTGCGAGGGTGTAACATATGCCGGCGCAGTGATGAC
GGTG
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