mRNA_F-serratus_M_contig1296.2175.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1296.2175.1
Unique NamemRNA_F-serratus_M_contig1296.2175.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1296.2175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1296contigF-serratus_M_contig1296:134422..135602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size361
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1296.2175.1prot_F-serratus_M_contig1296.2175.1Fucus serratus malepolypeptideF-serratus_M_contig1296 134441..135527 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929239.3089094-UTR-F-serratus_M_contig1296:134421..1344401622929239.3089094-UTR-F-serratus_M_contig1296:134421..134440Fucus serratus maleUTRF-serratus_M_contig1296 134422..134440 -
1690962764.5512235-UTR-F-serratus_M_contig1296:134421..1344401690962764.5512235-UTR-F-serratus_M_contig1296:134421..134440Fucus serratus maleUTRF-serratus_M_contig1296 134422..134440 -
1622929239.3646605-UTR-F-serratus_M_contig1296:135527..1356021622929239.3646605-UTR-F-serratus_M_contig1296:135527..135602Fucus serratus maleUTRF-serratus_M_contig1296 135528..135602 -
1690962764.5778854-UTR-F-serratus_M_contig1296:135527..1356021690962764.5778854-UTR-F-serratus_M_contig1296:135527..135602Fucus serratus maleUTRF-serratus_M_contig1296 135528..135602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929239.337686-CDS-F-serratus_M_contig1296:134440..1344501622929239.337686-CDS-F-serratus_M_contig1296:134440..134450Fucus serratus maleCDSF-serratus_M_contig1296 134441..134450 -
1690962764.56043-CDS-F-serratus_M_contig1296:134440..1344501690962764.56043-CDS-F-serratus_M_contig1296:134440..134450Fucus serratus maleCDSF-serratus_M_contig1296 134441..134450 -
1622929239.3512754-CDS-F-serratus_M_contig1296:135270..1355271622929239.3512754-CDS-F-serratus_M_contig1296:135270..135527Fucus serratus maleCDSF-serratus_M_contig1296 135271..135527 -
1690962764.5691526-CDS-F-serratus_M_contig1296:135270..1355271690962764.5691526-CDS-F-serratus_M_contig1296:135270..135527Fucus serratus maleCDSF-serratus_M_contig1296 135271..135527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1296.2175.1

>prot_F-serratus_M_contig1296.2175.1 ID=prot_F-serratus_M_contig1296.2175.1|Name=mRNA_F-serratus_M_contig1296.2175.1|organism=Fucus serratus male|type=polypeptide|length=89bp
MYEAQHSPAWFAEAITNTREARNRNRRARVDSSASNRSAESGRPRQREDP
ASGRGKSKRVMTALTTDSDTGPDSPTASDRDKRHPRKN*
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mRNA from alignment at F-serratus_M_contig1296:134422..135602-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1296.2175.1 ID=mRNA_F-serratus_M_contig1296.2175.1|Name=mRNA_F-serratus_M_contig1296.2175.1|organism=Fucus serratus male|type=mRNA|length=1181bp|location=Sequence derived from alignment at F-serratus_M_contig1296:134422..135602- (Fucus serratus male)
TTCGCCTTGCAGACGTCCTCACTCCCGCCCAACACCGCTCAAGAAATCTC
CGACTTGTGCCAGCTCATCAAGGAGATGTACGAGGCCCAACATTCGCCCG
CATGGTTCGCGGAAGCCATCACCAATACTCGCGAAGCTCGCAACCGGAAC
AGACGCGCCCGGGTCGACTCTTCGGCAAGCAACCGCTCTGCTGAATCGGG
GAGACCACGTCAGCGCGAAGATCCCGCCAGCGGCCGTGGCAAATCCAAAC
GGGTGATGACAGCGCTTACCACCGACAGCGACACCGGCCCAGACTCCCCT
ACCGCGTCAGATCGGGACAAACGGCATCCCAGGCAAGTGATCCCCCGCAT
CTTTCATGCACCGGCACCCCTGGGTAGCGCACCGGCATTTCTCCCTTGGA
TCGCTCGCCCCCGAGGAATGCGGCGCAATACCCCGTCATGTTCCTCTCCG
GACTTAAGAGCGCCGCGCGAGGTGTCCATACCTCAAGGAAATCAAACAAC
GGTCGGGTCCCCGCACCCTTTATTTACACCACAATCCCTCGAGATCATTA
CTACCGCCACAATAGCTGCCCTAAACCAGCACTTGGCACACATCGGCCTT
CTGCCGCGGACGACCGTAACACCACCGGACGAATCCCCCACCGTCCCCAT
ACAGTGCGCGACTAACGAGATACTGCCGGTTCCCCCGCGAACGCTACCCG
CGCCCCCGCGCCAAAACGCCTATCTCACTAACCCGGTCCCTGTCGATACA
TATCTTCCGGCCGACGCGCTAACTGACACTCGTGACAACCGATCGCCCGA
ATATCGCAGTGATTACACATCGCACTGCTTCCGCCGCGAATTCACCTCGA
AAATACAGGCAGAATACCGCACGCTTGACACCAGATGCGTCCCGCGAGTA
CACCCGCTACAATTTTCACCCCACACGGACAGAACGGCCGCAACCCAACT
GCTTATACAGTCTATGCGAGACGCCCTGTCAGGGATATTCGATGTCGCTG
ACCCATCGGGTTCCGTGACTTTAAGATCCCCCACATGGGTCCCCGGCTGG
CCTGCCCCCCTCTTGAAACTCACCAAAGCCGCCATCATGCCTAACCGTGA
CGACACCCACACCTTACACCGGCTCGTTGATGACCTTTTCGCCCAACTCC
AGGAAAAATTAGCATCCGGAGCGGACGGCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1296:134422..135602-

>mRNA_F-serratus_M_contig1296.2175.1 ID=mRNA_F-serratus_M_contig1296.2175.1|Name=mRNA_F-serratus_M_contig1296.2175.1|organism=Fucus serratus male|type=CDS|length=534bp|location=Sequence derived from alignment at F-serratus_M_contig1296:134422..135602- (Fucus serratus male)
ATGTACGAGGCCCAACATTCGCCCGCATGGTTCGCGGAAGCCATCACCAA
TACTCGCGAAGCTCGCAACCGGAACAGACGCGCCCGGGTCGACTCTTCGG
CAAGCAACCGCTCTGCTGAATCGGGGAGACCACGTCAGCGCGAAGATCCC
GCCAGCGGCCGTGGCAAATCCAAACGGGTGATGACAGCGCTTACCACCGA
CAGCGACACCGGCCCAGACTCCCCTACCGCGTCAGATCGGGACAAACGGC
ATCCCAGATGTACGAGGCCCAACATTCGCCCGCATGGTTCGCGGAAGCCA
TCACCAATACTCGCGAAGCTCGCAACCGGAACAGACGCGCCCGGGTCGAC
TCTTCGGCAAGCAACCGCTCTGCTGAATCGGGGAGACCACGTCAGCGCGA
AGATCCCGCCAGCGGCCGTGGCAAATCCAAACGGGTGATGACAGCGCTTA
CCACCGACAGCGACACCGGCCCAGACTCCCCTACCGCGTCAGATCGGGAC
AAACGGCATCCCAGGAAAAATTAGGAAAAATTAG
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