mRNA_F-serratus_M_contig1294.2169.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1294.2169.1
Unique Name	mRNA_F-serratus_M_contig1294.2169.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig1294.2169.1 vs. uniprot
Match: A0A6H5KBZ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ2_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 4.790e-31
Identity = 62/107 (57.94%), Postives = 74/107 (69.16%), Query Frame = 1

Query:   13 MVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPPFNGGQYLDALKLREEDSGSLPASSLASAPTSEADVAAKLESAWDGVKKRAIEAAGK 333
            MV+ D LHPVA+  R ELC+ALV+RFYGRVWD  T DPS F D A LLTPPF+ G YL A+KL  E+   LPA S   APTS+ DV  KL+ AW  ++KRA+ A  K
Sbjct:    1 MVAHDDLHPVAQKARQELCRALVTRFYGRVWDESTLDPSIFADVACLLTPPFSEGNYLSAMKLTVEEGDYLPAGSSVIAPTSDEDVREKLDGAWAEIQKRAVTAVKK 107

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BLAST of mRNA_F-serratus_M_contig1294.2169.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 6.720e-28
Identity = 62/108 (57.41%), Postives = 73/108 (67.59%), Query Frame = 1

Query:    1 LPTTMVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPPFNGGQYLDALKLREEDSGSLPASSLASAPTSEADVAAKLESAWDGVKKRAIEA 324
            LP  MV+ D LHPVA+  R+ELC+ALVSRFYGRVWD    DPS F D+A LLTPPF+ G YL A+KL  E+   L A S   APTS+ DV  KLE  W  + KRA+ A
Sbjct:  289 LPHKMVAHDELHPVAQKARNELCRALVSRFYGRVWDDSCLDPSMFCDAACLLTPPFSEGNYLSAMKLTAEEDEYLAAGSTVVAPTSDEDVREKLEGIWVEINKRAVTA 396

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BLAST of mRNA_F-serratus_M_contig1294.2169.1 vs. uniprot
Match: A0A6H5JWE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWE7_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.470e-27
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = 1

Query:    1 LPTTMVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPPFNGGQYLDALKLREEDSGSLPASSLASAPTSEADVAAKLESAWDGVKKRAIEA 324
            LP  MV+ D LHPVA   R+ELC+ALV+RFYGRVWD  T DPS   D+  LLTPPF+ G Y+ A+KL  E+   LPA S  +APT + +V  KL+ AW  +KKRA+ A
Sbjct:  168 LPHKMVAHDDLHPVAHKARNELCRALVTRFYGRVWDTSTLDPSVLCDAPCLLTPPFSEGNYVSAMKLTAEECEYLPAGSCVTAPTLDEEVKEKLDGAWTEIKKRAVAA 275

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BLAST of mRNA_F-serratus_M_contig1294.2169.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.560e-27
Identity = 63/108 (58.33%), Postives = 73/108 (67.59%), Query Frame = 1

Query:    1 LPTTMVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPPFNGGQYLDALKLREEDSGSLPASSLASAPTSEADVAAKLESAWDGVKKRAIEA 324
            LP  MV+ D LHPVA+  R+ELC+ALVSRFYGRVWD    DPS F D+A LLTPPF+ G Y  A+KL  E+   L A S   APTS+ DV  KLE  W  +KKRAI A
Sbjct:  418 LPHKMVAHDELHPVAQKARNELCRALVSRFYGRVWDDSCLDPSMFCDAACLLTPPFSEGNYPSAMKLTAEEDEYLAAGSTVVAPTSDEDVREKLEGIWAEIKKRAITA 525

[Close]

BLAST of mRNA_F-serratus_M_contig1294.2169.1 vs. uniprot
Match: A0A6H5JGB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB7_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.920e-27
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = 1

Query:    1 LPTTMVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPPFNGGQYLDALKLREEDSGSLPASSLASAPTSEADVAAKLESAWDGVKKRAIEA 324
            LP  MV+ D LHPVA+  R++LC+ALV+RFYGRVWD  T DPS   D+A LLTPPF+ G YL A+KL  E    LP  S  +APT + +V  KL+ AW  +KKRA+ A
Sbjct:  203 LPQKMVAHDDLHPVAQKARNKLCRALVTRFYGRVWDTSTLDPSVLCDAACLLTPPFSEGNYLSAMKLTAEGCEYLPTGSCVTAPTPDEEVQKKLDGAWAEIKKRAVAA 310

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BLAST of mRNA_F-serratus_M_contig1294.2169.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.960e-27
Identity = 60/104 (57.69%), Postives = 72/104 (69.23%), Query Frame = 1

Query:   13 MVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPPFNGGQYLDALKLREEDSGSLPASSLASAPTSEADVAAKLESAWDGVKKRAIEA 324
            MV+ D LHPVA+  RD+LC+ALVSRFYG VWD    DPS F D+A LLTPPF+ G YL A+KL  E+  +L A S   APTS+ DV  KLE  W  +KKRA+ A
Sbjct:  302 MVAHDELHPVAQKARDKLCRALVSRFYGHVWDDSCLDPSMFCDAACLLTPPFSEGNYLSAMKLTAEEDDNLAAVSTVVAPTSDEDVREKLEGIWAEIKKRAVTA 405

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BLAST of mRNA_F-serratus_M_contig1294.2169.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.280e-26
Identity = 56/107 (52.34%), Postives = 78/107 (72.90%), Query Frame = 1

Query:    1 LPTTMVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPPFNGGQYLDALKLREEDSGSLPASSLASAPTSEADVAAKLESAWDGVKKRAIE 321
            LP+ MVS D LHP     R+ELC+AL+SR Y RVW+  +P+PSFF D+A LLTPPF+ G+++ A++L  ED+  LP SS   APT++ +V AKL+ AW  ++KRA+E
Sbjct:  220 LPSKMVSADQLHPTTTLAREELCRALMSRLYERVWNEQSPNPSFFCDAACLLTPPFSEGRHVSAMRLTAEDAMYLPNSSNIIAPTADFEVTAKLDWAWTEIRKRAVE 326

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BLAST of mRNA_F-serratus_M_contig1294.2169.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.590e-24
Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 1

Query:    1 LPTTMVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPPFNGGQYLDALKLREEDSGSLPASSLASAPTSEADVAAKLESAWDGVKKRAIEAAGKQ 336
            LP  MV P+ LH   + TR E+ +ALVSRFYGRVWD  T DP FF  +A LLTPPF+ G ++ A+KL   D   LP++S A+APT + +V AKL+  W  +K+RA+EA  K+
Sbjct:  542 LPFKMVPPEQLHAAVEKTRVEMRRALVSRFYGRVWDENTLDPPFFCHAACLLTPPFSEGLHVAAMKLAAGDDEYLPSTSTATAPTMDEEVTAKLDETWKEIKERAVEAVKKE 653

[Close]

BLAST of mRNA_F-serratus_M_contig1294.2169.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.510e-23
Identity = 55/105 (52.38%), Postives = 69/105 (65.71%), Query Frame = 1

Query:   13 MVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPPFNGGQYLDALKLREEDSGSLPASSLASAPTSEADVAAKLESAWDGVKKRAIEAA 327
            M+    L PV   TR EL KALV R +GRVWD  + DPS FRD+AVLLTPPFN G+YL+AL+L   D+  L       APT +++V AKL+  W  +K+RA EAA
Sbjct:    1 MILASELRPVTVKTRKELSKALVERLFGRVWDDDSADPSPFRDAAVLLTPPFNTGKYLEALRLSAADAEYLSIGKKGLAPTMDSEVTAKLDGCWADIKRRAWEAA 105

[Close]

BLAST of mRNA_F-serratus_M_contig1294.2169.1 vs. uniprot
Match: A0A6H5JTT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT2_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.550e-23
Identity = 54/98 (55.10%), Postives = 67/98 (68.37%), Query Frame = 1

Query:    1 LPTTMVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPPFNGGQYLDALKLREEDSGSLPASSLASAPTSEADVAAKLESAW 294
            LP  MV+ D L PVA+  R+ELC+AL +RFYGRVWD  T DPS   D+A LLTPPF+ G YL A+KL  E+   LPA S  +APT + +V  KL+ AW
Sbjct:  254 LPHHMVAHDYLDPVAQKERNELCRALGTRFYGRVWDTSTLDPSVLCDAACLLTPPFSEGNYLSAMKLTAEEGEYLPAGSCVTAPTLDEEVQEKLDGAW 351

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1294.2169.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1294.2169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 11


Match Name	E-value	Identity	Description
A0A6H5KBZ2_9PHAE	4.790e-31	57.94	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JZ66_9PHAE	6.720e-28	57.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWE7_9PHAE	1.470e-27	54.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K0P1_9PHAE	1.560e-27	58.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JGB7_9PHAE	1.920e-27	54.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JB08_9PHAE	1.960e-27	57.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K8W6_9PHAE	2.280e-26	52.34	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JJJ9_9PHAE	1.590e-24	50.89	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JZQ5_9PHAE	1.510e-23	52.38	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JTT2_9PHAE	1.550e-23	55.10	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1294	contig	F-serratus_M_contig1294:231820..232155 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	336
Cds size	324
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929237.1196344-UTR-F-serratus_M_contig1294:231819..231831	1622929237.1196344-UTR-F-serratus_M_contig1294:231819..231831	Fucus serratus male	UTR	F-serratus_M_contig1294 231820..231831 +
1690962763.5046012-UTR-F-serratus_M_contig1294:231819..231831	1690962763.5046012-UTR-F-serratus_M_contig1294:231819..231831	Fucus serratus male	UTR	F-serratus_M_contig1294 231820..231831 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929237.1632562-CDS-F-serratus_M_contig1294:231831..232155	1622929237.1632562-CDS-F-serratus_M_contig1294:231831..232155	Fucus serratus male	CDS	F-serratus_M_contig1294 231832..232155 +
1690962763.5128376-CDS-F-serratus_M_contig1294:231831..232155	1690962763.5128376-CDS-F-serratus_M_contig1294:231831..232155	Fucus serratus male	CDS	F-serratus_M_contig1294 231832..232155 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1294.2169.1	prot_F-serratus_M_contig1294.2169.1	Fucus serratus male	polypeptide	F-serratus_M_contig1294 231832..232155 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1294:231820..232155+
coding sequence from alignment at F-serratus_M_contig1294:231820..232155+

protein sequence of mRNA_F-serratus_M_contig1294.2169.1

>prot_F-serratus_M_contig1294.2169.1 ID=prot_F-serratus_M_contig1294.2169.1|Name=mRNA_F-serratus_M_contig1294.2169.1|organism=Fucus serratus male|type=polypeptide|length=108bp
MVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTP
PFNGGQYLDALKLREEDSGSLPASSLASAPTSEADVAAKLESAWDGVKKR
AIEAAGKQ

mRNA from alignment at F-serratus_M_contig1294:231820..232155+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1294.2169.1 ID=mRNA_F-serratus_M_contig1294.2169.1|Name=mRNA_F-serratus_M_contig1294.2169.1|organism=Fucus serratus male|type=mRNA|length=336bp|location=Sequence derived from alignment at F-serratus_M_contig1294:231820..232155+ (Fucus serratus male)
CTGCCGACCACGATGGTGTCACCAGATGCGCTGCACCCCGTGGCGAAAAC
CACGCGAGACGAGCTCTGCAAGGCTCTGGTTTCGAGGTTCTACGGGCGTG
TGTGGGACCCGTTGACACCTGATCCCTCCTTTTTCCGCGACTCTGCTGTC
CTGCTCACGCCCCCCTTCAACGGGGGCCAGTACCTCGACGCGCTCAAACT
GAGAGAGGAGGATTCCGGATCCCTGCCAGCAAGCTCGCTGGCGTCGGCCC
CAACTTCGGAGGCTGACGTGGCCGCGAAGCTCGAGAGCGCCTGGGACGGC
GTCAAGAAGCGCGCCATCGAAGCTGCCGGGAAGCAG

Coding sequence (CDS) from alignment at F-serratus_M_contig1294:231820..232155+

>mRNA_F-serratus_M_contig1294.2169.1 ID=mRNA_F-serratus_M_contig1294.2169.1|Name=mRNA_F-serratus_M_contig1294.2169.1|organism=Fucus serratus male|type=CDS|length=648bp|location=Sequence derived from alignment at F-serratus_M_contig1294:231820..232155+ (Fucus serratus male)
ATGGTGTCACCAGATGCGCTGCACCCCGTGGCGAAAACCACGCGAGACGA
GCTCTGCAAGGCTCTGGTTTCGAGGTTCTACGGGCGTGTGTGGGACCCGT
TGACACCTGATCCCTCCTTTTTCCGCGACTCTGCTGTCCTGCTCACGCCC
CCCTTCAACGGGGGCCAGTACCTCGACGCGCTCAAACTGAGAGAGGAGGA
TTCCGGATCCCTGCCAGCAAGCTCGCTGGCGTCGGCCCCAACTTCGGAGG
CTGACGTGGCCGCGAAGCTCGAGAGCGCCTGGGACGGCGTCAAGAAGCGC
GCCATCGAAGCTGCCGGGAAGCAGATGGTGTCACCAGATGCGCTGCACCC
CGTGGCGAAAACCACGCGAGACGAGCTCTGCAAGGCTCTGGTTTCGAGGT
TCTACGGGCGTGTGTGGGACCCGTTGACACCTGATCCCTCCTTTTTCCGC
GACTCTGCTGTCCTGCTCACGCCCCCCTTCAACGGGGGCCAGTACCTCGA
CGCGCTCAAACTGAGAGAGGAGGATTCCGGATCCCTGCCAGCAAGCTCGC
TGGCGTCGGCCCCAACTTCGGAGGCTGACGTGGCCGCGAAGCTCGAGAGC
GCCTGGGACGGCGTCAAGAAGCGCGCCATCGAAGCTGCCGGGAAGCAG