mRNA_F-serratus_M_contig1292.2158.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1292.2158.1
Unique NamemRNA_F-serratus_M_contig1292.2158.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1292.2158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1292contigF-serratus_M_contig1292:135082..135469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size370
Cds size363
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1292.2158.1prot_F-serratus_M_contig1292.2158.1Fucus serratus malepolypeptideF-serratus_M_contig1292 135087..135469 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929234.5793693-UTR-F-serratus_M_contig1292:135081..1350861622929234.5793693-UTR-F-serratus_M_contig1292:135081..135086Fucus serratus maleUTRF-serratus_M_contig1292 135082..135086 -
1690962762.4731402-UTR-F-serratus_M_contig1292:135081..1350861690962762.4731402-UTR-F-serratus_M_contig1292:135081..135086Fucus serratus maleUTRF-serratus_M_contig1292 135082..135086 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929234.5929818-CDS-F-serratus_M_contig1292:135086..1353741622929234.5929818-CDS-F-serratus_M_contig1292:135086..135374Fucus serratus maleCDSF-serratus_M_contig1292 135087..135374 -
1690962762.4819455-CDS-F-serratus_M_contig1292:135086..1353741690962762.4819455-CDS-F-serratus_M_contig1292:135086..135374Fucus serratus maleCDSF-serratus_M_contig1292 135087..135374 -
1622929234.6058562-CDS-F-serratus_M_contig1292:135394..1354691622929234.6058562-CDS-F-serratus_M_contig1292:135394..135469Fucus serratus maleCDSF-serratus_M_contig1292 135395..135469 -
1690962762.4927073-CDS-F-serratus_M_contig1292:135394..1354691690962762.4927073-CDS-F-serratus_M_contig1292:135394..135469Fucus serratus maleCDSF-serratus_M_contig1292 135395..135469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1292.2158.1

>prot_F-serratus_M_contig1292.2158.1 ID=prot_F-serratus_M_contig1292.2158.1|Name=mRNA_F-serratus_M_contig1292.2158.1|organism=Fucus serratus male|type=polypeptide|length=121bp
CFLTGFLLVSTTASIYTANRHRVNPSRLCQIAQLRTDGVHCRDPTGTGPV
ILKVYSRWTSTYHPACGHKGSSHLSPVHALQFSSRCKFSTLTIRQPMVEF
YLLAFPRFPLRKKEHKFCLS*
back to top

mRNA from alignment at F-serratus_M_contig1292:135082..135469-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1292.2158.1 ID=mRNA_F-serratus_M_contig1292.2158.1|Name=mRNA_F-serratus_M_contig1292.2158.1|organism=Fucus serratus male|type=mRNA|length=388bp|location=Sequence derived from alignment at F-serratus_M_contig1292:135082..135469- (Fucus serratus male)
TGCTTCCTCACGGGATTCCTTCTGGTTTCCACGACGGCGTCCATTTATAC
CGCCAACCGTCATCGGGTCAATCCCGCCAACCGTCATCGGGTCAGTCCCG
ACTTTGTCAGATCGCGCAACTTCGTACCGATGGCGTTCACTGCCGAGATC
CCACCGGCACAGGACCAGTAATCCTCAAAGTATATAGCCGATGGACCTCT
ACTTACCACCCTGCCTGTGGTCACAAAGGATCTTCCCATCTCTCCCCGGT
GCACGCCTTGCAATTTTCATCGCGATGCAAGTTCAGCACTCTTACAATAC
GTCAACCAATGGTTGAATTTTACTTACTCGCGTTCCCACGCTTTCCGTTA
CGAAAGAAAGAACACAAATTCTGCTTAAGCTAAGAATC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1292:135082..135469-

>mRNA_F-serratus_M_contig1292.2158.1 ID=mRNA_F-serratus_M_contig1292.2158.1|Name=mRNA_F-serratus_M_contig1292.2158.1|organism=Fucus serratus male|type=CDS|length=726bp|location=Sequence derived from alignment at F-serratus_M_contig1292:135082..135469- (Fucus serratus male)
TGCTTCCTCACGGGATTCCTTCTGGTTTCCACGACGGCGTCCATTTATAC
CGCCAACCGTCATCGGGTCAATCCCTGCTTCCTCACGGGATTCCTTCTGG
TTTCCACGACGGCGTCCATTTATACCGCCAACCGTCATCGGGTCAATCCC
TCCCGACTTTGTCAGATCGCGCAACTTCGTACCGATGGCGTTCACTGCCG
AGATCCCACCGGCACAGGACCAGTAATCCTCAAAGTATATAGCCGATGGA
CCTCTACTTACCACCCTGCCTGTGGTCACAAAGGATCTTCCCATCTCTCC
CCGGTGCACGCCTTGCAATTTTCATCGCGATGCAAGTTCAGCACTCTTAC
AATACGTCAACCAATGGTTGAATTTTACTTACTCGCGTTCCCACGCTTTC
CGTTACGAAAGAAAGAACACAAATTCTGCTTAAGCTAATCCCGACTTTGT
CAGATCGCGCAACTTCGTACCGATGGCGTTCACTGCCGAGATCCCACCGG
CACAGGACCAGTAATCCTCAAAGTATATAGCCGATGGACCTCTACTTACC
ACCCTGCCTGTGGTCACAAAGGATCTTCCCATCTCTCCCCGGTGCACGCC
TTGCAATTTTCATCGCGATGCAAGTTCAGCACTCTTACAATACGTCAACC
AATGGTTGAATTTTACTTACTCGCGTTCCCACGCTTTCCGTTACGAAAGA
AAGAACACAAATTCTGCTTAAGCTAA
back to top