prot_F-serratus_M_contig1290.2148.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1290.2148.1
Unique Nameprot_F-serratus_M_contig1290.2148.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length376
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1290.2148.1 vs. uniprot
Match: D7FT35_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT35_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 2.070e-76
Identity = 203/333 (60.96%), Postives = 234/333 (70.27%), Query Frame = 0 
Query:   51 MEALRRSTDVDTLIFHNAGLSDSAVGILIEGLPHTTVRCLGLDYNTPLPLSLTERNEASSRPSEAVLVGEEEKEAGNPAWSS--RNFPGLLLEGSKLRALQLRGNDIDDAEAVALAEAIEGNRALCTLNLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPEELEKRAKVESKIAAQNKKAAQDAKKKKKSGNKVETWLPLSAVTRHA--DGRD--VAGGSRSLAVLNLSDNRELGAGGALIELLERIAETRKSSDEEGPSSTGDNIPGGAVALQEIHLTRCRGCVKGDGEEDEVALAAIR--LKPTVVTL 375
            MEAL+RS+DVDT+ FHNAGL+ +++ +L+EGLPHTTVRC  LDYNT LP+ L+  +  +  P         E+      +SS  RNF GL+ EGSKL+AL LRGN + DAEA+ALAEAIE           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLP E EKRA  + KIAAQNK AA DA KKKK   KVET LPLSAVT     DGR   VAGGSRSLA LNL+DNR+LG GGAL  LL RI   RK    E     G    GG+V LQE+HLTRC+G  +  G ED+ A+AA+   L+PT V +
Sbjct:    2 MEALKRSSDVDTVDFHNAGLTGASIDVLVEGLPHTTVRCFALDYNT-LPVVLSSSSPPTRPPPSGPTEPALEEAPATEGFSSLTRNFAGLVSEGSKLKALSLRGNALGDAEAIALAEAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPAEQEKRAAADVKIAAQNKLAA-DAMKKKKDA-KVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGEGGALAGLLSRIVNARKEEAGEAGEGAGFGAGGGSVVLQELHLTRCQGYAEEAGGEDDTAIAAMSFALRPTKVVV 331
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1290.2148.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT35_ECTSI2.070e-7660.96Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 170..197
e-value: 0.7
score: 18.2
coord: 198..225
e-value: 16.0
score: 8.6
coord: 142..169
e-value: 0.21
score: 20.7
coord: 287..313
e-value: 47.0
score: 5.3
NoneNo IPR availablePANTHERPTHR46984FAMILY NOT NAMEDcoord: 125..259
coord: 242..327
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 47..305
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 143..164
e-value: 0.1
score: 12.7
coord: 175..192
e-value: 0.01
score: 15.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1290contigF-serratus_M_contig1290:201690..204504 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1290.2148.1mRNA_F-serratus_M_contig1290.2148.1Fucus serratus malemRNAF-serratus_M_contig1290 201690..204504 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1290.2148.1 ID=prot_F-serratus_M_contig1290.2148.1|Name=mRNA_F-serratus_M_contig1290.2148.1|organism=Fucus serratus male|type=polypeptide|length=376bp
RIFQVPRHPCLVSRRSQKDSDKSTSSVPEASNLPLRFQNFIVDVTTLRIT
MEALRRSTDVDTLIFHNAGLSDSAVGILIEGLPHTTVRCLGLDYNTPLPL
SLTERNEASSRPSEAVLVGEEEKEAGNPAWSSRNFPGLLLEGSKLRALQL
RGNDIDDAEAVALAEAIEGNRALCTLNLFDNKISDVGAAAFAKSLRLNSV
LRGLSLARNRLTSASAKAFGLLLAGGYEVLPEELEKRAKVESKIAAQNKK
AAQDAKKKKKSGNKVETWLPLSAVTRHADGRDVAGGSRSLAVLNLSDNRE
LGAGGALIELLERIAETRKSSDEEGPSSTGDNIPGGAVALQEIHLTRCRG
CVKGDGEEDEVALAAIRLKPTVVTL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt