mRNA_F-serratus_M_contig1290.2148.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1290.2148.1
Unique NamemRNA_F-serratus_M_contig1290.2148.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1290.2148.1 vs. uniprot
Match: D7FT35_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT35_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 2.070e-76
Identity = 203/333 (60.96%), Postives = 234/333 (70.27%), Query Frame = 1 
Query:  151 MEALRRSTDVDTLIFHNAGLSDSAVGILIEGLPHTTVRCLGLDYNTPLPLSLTERNEASSRPSEAVLVGEEEKEAGNPAWSS--RNFPGLLLEGSKLRALQLRGNDIDDAEAVALAEAIEGNRALCTLNLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPEELEKRAKVESKIAAQNKKAAQDAKKKKKSGNKVETWLPLSAVTRHA--DGRD--VAGGSRSLAVLNLSDNRELGAGGALIELLERIAETRKSSDEEGPSSTGDNIPGGAVALQEIHLTRCRGCVKGDGEEDEVALAAIR--LKPTVVTL 1125
            MEAL+RS+DVDT+ FHNAGL+ +++ +L+EGLPHTTVRC  LDYNT LP+ L+  +  +  P         E+      +SS  RNF GL+ EGSKL+AL LRGN + DAEA+ALAEAIE           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLP E EKRA  + KIAAQNK AA DA KKKK   KVET LPLSAVT     DGR   VAGGSRSLA LNL+DNR+LG GGAL  LL RI   RK    E     G    GG+V LQE+HLTRC+G  +  G ED+ A+AA+   L+PT V +
Sbjct:    2 MEALKRSSDVDTVDFHNAGLTGASIDVLVEGLPHTTVRCFALDYNT-LPVVLSSSSPPTRPPPSGPTEPALEEAPATEGFSSLTRNFAGLVSEGSKLKALSLRGNALGDAEAIALAEAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPAEQEKRAAADVKIAAQNKLAA-DAMKKKKDA-KVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGEGGALAGLLSRIVNARKEEAGEAGEGAGFGAGGGSVVLQELHLTRCQGYAEEAGGEDDTAIAAMSFALRPTKVVV 331
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1290.2148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT35_ECTSI2.070e-7660.96Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1290contigF-serratus_M_contig1290:201690..204504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score252.7
Seed ortholog evalue2.7e-64
Seed eggNOG ortholog2880.D7FT35
KEGG koko:K09257
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons3
Model size1128
Cds size1128
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1290.2148.1prot_F-serratus_M_contig1290.2148.1Fucus serratus malepolypeptideF-serratus_M_contig1290 201690..204504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929233.3255336-CDS-F-serratus_M_contig1290:201689..2022571622929233.3255336-CDS-F-serratus_M_contig1290:201689..202257Fucus serratus maleCDSF-serratus_M_contig1290 201690..202257 -
1690962761.8258615-CDS-F-serratus_M_contig1290:201689..2022571690962761.8258615-CDS-F-serratus_M_contig1290:201689..202257Fucus serratus maleCDSF-serratus_M_contig1290 201690..202257 -
1622929233.3445547-CDS-F-serratus_M_contig1290:203175..2033111622929233.3445547-CDS-F-serratus_M_contig1290:203175..203311Fucus serratus maleCDSF-serratus_M_contig1290 203176..203311 -
1690962761.837842-CDS-F-serratus_M_contig1290:203175..2033111690962761.837842-CDS-F-serratus_M_contig1290:203175..203311Fucus serratus maleCDSF-serratus_M_contig1290 203176..203311 -
1622929233.3650115-CDS-F-serratus_M_contig1290:204080..2045041622929233.3650115-CDS-F-serratus_M_contig1290:204080..204504Fucus serratus maleCDSF-serratus_M_contig1290 204081..204504 -
1690962761.8472815-CDS-F-serratus_M_contig1290:204080..2045041690962761.8472815-CDS-F-serratus_M_contig1290:204080..204504Fucus serratus maleCDSF-serratus_M_contig1290 204081..204504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1290.2148.1

>prot_F-serratus_M_contig1290.2148.1 ID=prot_F-serratus_M_contig1290.2148.1|Name=mRNA_F-serratus_M_contig1290.2148.1|organism=Fucus serratus male|type=polypeptide|length=376bp
RIFQVPRHPCLVSRRSQKDSDKSTSSVPEASNLPLRFQNFIVDVTTLRIT
MEALRRSTDVDTLIFHNAGLSDSAVGILIEGLPHTTVRCLGLDYNTPLPL
SLTERNEASSRPSEAVLVGEEEKEAGNPAWSSRNFPGLLLEGSKLRALQL
RGNDIDDAEAVALAEAIEGNRALCTLNLFDNKISDVGAAAFAKSLRLNSV
LRGLSLARNRLTSASAKAFGLLLAGGYEVLPEELEKRAKVESKIAAQNKK
AAQDAKKKKKSGNKVETWLPLSAVTRHADGRDVAGGSRSLAVLNLSDNRE
LGAGGALIELLERIAETRKSSDEEGPSSTGDNIPGGAVALQEIHLTRCRG
CVKGDGEEDEVALAAIRLKPTVVTL*
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mRNA from alignment at F-serratus_M_contig1290:201690..204504-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1290.2148.1 ID=mRNA_F-serratus_M_contig1290.2148.1|Name=mRNA_F-serratus_M_contig1290.2148.1|organism=Fucus serratus male|type=mRNA|length=2815bp|location=Sequence derived from alignment at F-serratus_M_contig1290:201690..204504- (Fucus serratus male)
AGGATATTTCAGGTCCCCAGACACCCTTGCCTGGTTTCACGTCGGTCGCA
AAAGGACTCCGACAAGAGCACCAGCAGTGTCCCAGAGGCGTCAAATCTGC
CCTTACGATTCCAGAACTTCATCGTGGATGTCACGACCCTGCGAATCACG
ATGGAGGCGCTGAGGCGCTCCACAGACGTCGACACGCTCATCTTCCACAA
CGCGGGGCTGTCAGACTCCGCCGTTGGCATCCTCATCGAGGGCCTCCCAC
ACACGACCGTCCGCTGCCTCGGCCTGGACTACAACACGCCGTTGCCGCTG
TCTCTTACGGAACGAAACGAGGCATCGAGTAGGCCGTCGGAGGCTGTCCT
GGTCGGTGAAGAAGAAAAGGAGGCCGGGAACCCCGCATGGTCTTCAAGGA
ACTTCCCAGGGCTCCTCCTTGAAGGTGCGGGACACGCCGCGCCTTTCCGG
AGCGATCATGAAGTACGCGGTCATGTCTACACTCTTGCACAGAGTGTTGC
TTTGCCGGAAGAACCGTGCATCCGACATACGGATAATCATAGCCCTTTGG
GTTGCCCTTAAGCGCGAAACGACTACTTATTTTTAATGAAATAAAGAAAC
ACATTTTTTTAAAGAACGAGAAGACGCTAATTCACGTAGCTCACGCCCTT
CTACGAGTTAATATAGATATATAGATATATATTGGGTAGATCATCTCCCG
ACCCCGTTAGTTACTGCAAAATAAGCGTTTTTCTCAAGAGATAAATCGAT
TCCTGGCAACAGTACTGACATTTTCGGAGTTTTTTCTTGAAATCGTTGTA
ACCAACCCTTGATTGGCACATGGATAAGTGCTTTCGTTTGAGCTGTCGCC
GGGCCGAATCGGCGCGGGGGTTCGGAAATTAATATTTCGGGCCTCGTTCT
TAAATAAAAAGTTCGTTCTTTATCTCACCAAAATAATATTCTACCGTTGT
TGGTTGTCTCAGGACATCACTGCTGCATCACCGTACACCATGATGGCATC
GTCGTCCAACAAATAGTAGTGTAAGAAATGGCTTCCAGCAGAAAAAATGC
GCACCCCCCCCCTTCATTCATTTATTGTGTATATTTTTCACCTCTCACGC
CCCGACGCCAACTGTTGTATAATTATTATATGCCGAACGCACATATATCC
AACTTCGAGTGACTACTTTACTCCCTTACGGTGGTGCCGCAAGGTTCCAA
GCTTCGGGCTCTGCAGCTGAGAGGTAACGATATAGATGATGCCGAAGCTG
TGGCACTAGCTGAGGCCATCGAGGGAAATAGGGCTCTTTGCACGCTGAAT
CTTTTCGATAACAAGATTTCGGACGTCGGGTAAGTAACCGCGCCGAGGTA
TCTTTGGTCCATCCCCAGCAGATCTGTTGTTGTAATGTATGCCTGGCAGA
AACCGGGAGGGTTACGAATAATACGTGTCAGCGTTGACTGGGCCCCCTTA
CGACTGCGGGAAGCCCGCCCGACGAGCATCGGGGCACAACACGTTAACGT
CCGTGTACTGTGTTTTGAGACAACATATAACTATAGATGTTATGTTTTGA
ACCGTCTTCACTCAAGGTCATTCGCTAGGTGTCAAAAGTAGTACGGTGTC
CACTTTTTCTTCCGACACGTTCGTACGGTTCTCCCGCGAGGCCATGAAAA
TTATGGCCCGTCGTCGCTTGCGAGACTTTCGCCGCAGATTGGCGCCCAAA
CGGGACGCAAGCGAGCAAACGTTCTGGTCAAATAAATGACAAATAACTTG
TTGTGCATCAAGTGTGATTAAAGCCGGAAGTTTACAGTATCCGGTAGCTG
ACTTCTCCTTCAAACCAACTACTCTACATGCATAGCTCGAGTTGCTGATG
AAAGTGGGGATACATGGCAGTAATATAAATTATCATCTTCGAAACAAATT
ACACAAGTAGGCGTGTTTCCTGCGCGCGACGAAAGCCGTAAAGTATCTGA
GCTATCTTGTTTCGGCGCAGGCAGAGACCGGTTCGCGACCCGCTCCAGGC
ATCACCCGATCTTCATTCCGCAAAACATCCGAGCGGTCGTTTGAGGAACT
CCATTGCCTTTTCCACGCACGCTTGCGCCCACTAACAGATATATGCACTA
CCGCTACGTGCACAGATACAAACCGCTTCCATCCCTACCCATTCTGTCCC
TTTTTGTCGTCGGCGTGCGCCCGCAAAGTTAACTTTGCTGGATGGAACCG
CTCCCTTCCTCTCCTCCTCTCCCCCCAAAAAAACACTGCCGCCGTAGTGC
CGCCGCCTTCGCGAAAAGTCTCAGATTGAACAGCGTCCTGCGGGGGCTCT
CTCTGGCGAGAAACCGCCTGACGTCGGCTTCGGCCAAAGCCTTCGGTCTG
CTGCTGGCGGGGGGCTACGAGGTCCTGCCGGAGGAGCTCGAGAAGCGAGC
GAAGGTGGAGTCTAAGATCGCGGCGCAGAACAAGAAAGCAGCCCAGGACG
CCAAAAAAAAAAAGAAGAGCGGTAACAAGGTAGAGACGTGGTTGCCGCTG
AGTGCCGTAACGCGGCATGCAGACGGGCGGGATGTCGCCGGTGGGAGCAG
AAGCCTCGCGGTGCTAAACTTGTCCGATAATCGGGAGCTCGGCGCTGGGG
GCGCGCTGATCGAGCTCCTCGAGAGGATAGCCGAAACGAGAAAGAGTAGT
GACGAGGAGGGACCGTCGTCGACAGGGGACAACATCCCGGGCGGAGCGGT
TGCGCTGCAGGAGATCCATCTCACGCGCTGTCGGGGTTGCGTGAAAGGGG
ATGGTGAGGAGGACGAGGTCGCTTTGGCGGCCATCAGGCTCAAGCCCACA
GTCGTGACTTTGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1290:201690..204504-

>mRNA_F-serratus_M_contig1290.2148.1 ID=mRNA_F-serratus_M_contig1290.2148.1|Name=mRNA_F-serratus_M_contig1290.2148.1|organism=Fucus serratus male|type=CDS|length=2256bp|location=Sequence derived from alignment at F-serratus_M_contig1290:201690..204504- (Fucus serratus male)
AGGATATTTCAGGTCCCCAGACACCCTTGCCTGGTTTCACGTCGGTCGCA
AAAGGACTCCGACAAGAGCACCAGCAGTGTCCCAGAGGCGTCAAATCTGC
CCTTACGATTCCAGAACTTCATCGTGGATGTCACGACCCTGCGAATCACG
ATGGAGGCGCTGAGGCGCTCCACAGACGTCGACACGCTCATCTTCCACAA
CGCGGGGCTGTCAGACTCCGCCGTTGGCATCCTCATCGAGGGCCTCCCAC
ACACGACCGTCCGCTGCCTCGGCCTGGACTACAACACGCCGTTGCCGCTG
TCTCTTACGGAACGAAACGAGGCATCGAGTAGGCCGTCGGAGGCTGTCCT
GGTCGGTGAAGAAGAAAAGGAGGCCGGGAACCCCGCATGGTCTTCAAGGA
ACTTCCCAGGGCTCCTCCTTGAAGAGGATATTTCAGGTCCCCAGACACCC
TTGCCTGGTTTCACGTCGGTCGCAAAAGGACTCCGACAAGAGCACCAGCA
GTGTCCCAGAGGCGTCAAATCTGCCCTTACGATTCCAGAACTTCATCGTG
GATGTCACGACCCTGCGAATCACGATGGAGGCGCTGAGGCGCTCCACAGA
CGTCGACACGCTCATCTTCCACAACGCGGGGCTGTCAGACTCCGCCGTTG
GCATCCTCATCGAGGGCCTCCCACACACGACCGTCCGCTGCCTCGGCCTG
GACTACAACACGCCGTTGCCGCTGTCTCTTACGGAACGAAACGAGGCATC
GAGTAGGCCGTCGGAGGCTGTCCTGGTCGGTGAAGAAGAAAAGGAGGCCG
GGAACCCCGCATGGTCTTCAAGGAACTTCCCAGGGCTCCTCCTTGAAGGT
TCCAAGCTTCGGGCTCTGCAGCTGAGAGGTAACGATATAGATGATGCCGA
AGCTGTGGCACTAGCTGAGGCCATCGAGGGAAATAGGGCTCTTTGCACGC
TGAATCTTTTCGATAACAAGATTTCGGACGTCGGGTTCCAAGCTTCGGGC
TCTGCAGCTGAGAGGTAACGATATAGATGATGCCGAAGCTGTGGCACTAG
CTGAGGCCATCGAGGGAAATAGGGCTCTTTGCACGCTGAATCTTTTCGAT
AACAAGATTTCGGACGTCGGTGCCGCCGCCTTCGCGAAAAGTCTCAGATT
GAACAGCGTCCTGCGGGGGCTCTCTCTGGCGAGAAACCGCCTGACGTCGG
CTTCGGCCAAAGCCTTCGGTCTGCTGCTGGCGGGGGGCTACGAGGTCCTG
CCGGAGGAGCTCGAGAAGCGAGCGAAGGTGGAGTCTAAGATCGCGGCGCA
GAACAAGAAAGCAGCCCAGGACGCCAAAAAAAAAAAGAAGAGCGGTAACA
AGGTAGAGACGTGGTTGCCGCTGAGTGCCGTAACGCGGCATGCAGACGGG
CGGGATGTCGCCGGTGGGAGCAGAAGCCTCGCGGTGCTAAACTTGTCCGA
TAATCGGGAGCTCGGCGCTGGGGGCGCGCTGATCGAGCTCCTCGAGAGGA
TAGCCGAAACGAGAAAGAGTAGTGACGAGGAGGGACCGTCGTCGACAGGG
GACAACATCCCGGGCGGAGCGGTTGCGCTGCAGGAGATCCATCTCACGCG
CTGTCGGGGTTGCGTGAAAGGGGATGGTGAGGAGGACGAGGTCGCTTTGG
CGGCCATCAGGCTCAAGCCCACAGTCGTGACTTTGTAATGCCGCCGCCTT
CGCGAAAAGTCTCAGATTGAACAGCGTCCTGCGGGGGCTCTCTCTGGCGA
GAAACCGCCTGACGTCGGCTTCGGCCAAAGCCTTCGGTCTGCTGCTGGCG
GGGGGCTACGAGGTCCTGCCGGAGGAGCTCGAGAAGCGAGCGAAGGTGGA
GTCTAAGATCGCGGCGCAGAACAAGAAAGCAGCCCAGGACGCCAAAAAAA
AAAAGAAGAGCGGTAACAAGGTAGAGACGTGGTTGCCGCTGAGTGCCGTA
ACGCGGCATGCAGACGGGCGGGATGTCGCCGGTGGGAGCAGAAGCCTCGC
GGTGCTAAACTTGTCCGATAATCGGGAGCTCGGCGCTGGGGGCGCGCTGA
TCGAGCTCCTCGAGAGGATAGCCGAAACGAGAAAGAGTAGTGACGAGGAG
GGACCGTCGTCGACAGGGGACAACATCCCGGGCGGAGCGGTTGCGCTGCA
GGAGATCCATCTCACGCGCTGTCGGGGTTGCGTGAAAGGGGATGGTGAGG
AGGACGAGGTCGCTTTGGCGGCCATCAGGCTCAAGCCCACAGTCGTGACT
TTGTAA
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