mRNA_F-serratus_M_contig129.2138.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig129.2138.1
Unique NamemRNA_F-serratus_M_contig129.2138.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig129.2138.1 vs. uniprot
Match: A0A6H5L7F1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F1_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.260e-21
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 2 
Query:   80 GAALRALRLMVDNKQSVTEKQFVGAMEACMRQGSWTSGLEVFRLLLEDVRPRGRSP 247
            G ALRALRLMV+   SV++KQ+VGAMEACMRQGSWTSGLEVFRLLLED+RPRG SP
Sbjct:  455 GVALRALRLMVEENLSVSQKQYVGAMEACMRQGSWTSGLEVFRLLLEDLRPRGLSP 510
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BLAST of mRNA_F-serratus_M_contig129.2138.1 vs. uniprot
Match: D8LBV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV9_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.650e-16
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 2 
Query:  107 MVDNKQSVTEKQFVGAMEACMRQGSWTSGLEVFRLLLEDVRPRGRSP 247
            MV+   SV++KQ+VGAMEACMRQGSWTSGLEVFRLLLED+RPRG SP
Sbjct:    1 MVEENLSVSQKQYVGAMEACMRQGSWTSGLEVFRLLLEDLRPRGLSP 47
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig129.2138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7F1_9PHAE2.260e-2182.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBV9_ECTSI1.650e-1680.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig129contigF-serratus_M_contig129:256488..257494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size254
Cds size252
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig129.2138.1prot_F-serratus_M_contig129.2138.1Fucus serratus malepolypeptideF-serratus_M_contig129 256488..257494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929230.1152036-CDS-F-serratus_M_contig129:256487..2565961622929230.1152036-CDS-F-serratus_M_contig129:256487..256596Fucus serratus maleCDSF-serratus_M_contig129 256488..256596 +
1690962760.1524146-CDS-F-serratus_M_contig129:256487..2565961690962760.1524146-CDS-F-serratus_M_contig129:256487..256596Fucus serratus maleCDSF-serratus_M_contig129 256488..256596 +
1622929230.1268535-CDS-F-serratus_M_contig129:257117..2571831622929230.1268535-CDS-F-serratus_M_contig129:257117..257183Fucus serratus maleCDSF-serratus_M_contig129 257118..257183 +
1690962760.1694503-CDS-F-serratus_M_contig129:257117..2571831690962760.1694503-CDS-F-serratus_M_contig129:257117..257183Fucus serratus maleCDSF-serratus_M_contig129 257118..257183 +
1622929230.137545-CDS-F-serratus_M_contig129:257417..2574941622929230.137545-CDS-F-serratus_M_contig129:257417..257494Fucus serratus maleCDSF-serratus_M_contig129 257418..257494 +
1690962760.180432-CDS-F-serratus_M_contig129:257417..2574941690962760.180432-CDS-F-serratus_M_contig129:257417..257494Fucus serratus maleCDSF-serratus_M_contig129 257418..257494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig129.2138.1

>prot_F-serratus_M_contig129.2138.1 ID=prot_F-serratus_M_contig129.2138.1|Name=mRNA_F-serratus_M_contig129.2138.1|organism=Fucus serratus male|type=polypeptide|length=84bp
DGEGASGDKKSQQLREVLADAVKTGRGGGAPSLAADGGQQAISHREAVRR
SHGGVHAAGIVDFGPRGIPSFAGRRASPRAKSFQ
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mRNA from alignment at F-serratus_M_contig129:256488..257494+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig129.2138.1 ID=mRNA_F-serratus_M_contig129.2138.1|Name=mRNA_F-serratus_M_contig129.2138.1|organism=Fucus serratus male|type=mRNA|length=1007bp|location=Sequence derived from alignment at F-serratus_M_contig129:256488..257494+ (Fucus serratus male)
GACGGAGAAGGTGCATCGGGCGACAAGAAGTCTCAGCAGCTGAGGGAGGT
TTTGGCCGACGCTGTCAAGACCGGAAGAGGGGGCGGCGCTCCGAGCCTTG
CGGCTGATGGTGAAAGACCTGCGTTTGGTTCGTTTTGTTGCGCTTTTGTT
TGTTTCTCCGTAGCTCGGCCGGGATTTTGATTACAAAATACACGATTGAT
GACGGGCCGTCGTCTTTTCTCGTCGCACTATGACGCGTCTTTCCAAGGGT
GGCTTTTTCtTTTTTGTGCTATTGTTCCGGGGGTTTTGTTTACGGCTTAT
GTCGCCGATGCTTGCGACGCAAATATCTCCCACTGTGCAACTATTAATAC
TACTATTAATAGTACGTATTACAGCGCCGTCGCTGGACTACCTCGGTGGG
AAATGTATTTCATGTTTTATCTCTTTATGCCGTTGTGTGTATGTGCATTT
TGTTTTAATTGCACATTACCGCGCAATCCGGTGGTGCCATCCTAGTAATT
ATATGCCACTCGCATTGATCCTCCCAAGTATGTGTGTGTGTGTGTGTGTT
TCTAAAGACGCTGTTGCTGTTCGTATTCATACATTTCCCGGACCCGACCG
AACCCGCGCGCTGTGCGCTATCTCCTAAAGGTGGACAACAAGCAATCAGT
CACCGAGAAGCAGTTCGTCGGAGCCATGGAGGCGTGCATGCGGCAGGTGC
AGTACCGCGTTAACCGCCCCCCCCCCCTCTCAAAGTACCAGGAACGATTT
TTCTGGTTTGCCCGGACGAGACCAGAATTGCAAGGCGCTGCCGCAAGAAC
CATAGCTCTTACAAAAATGATCGTTTGCTAGTGAAAATACGCGTTTGTTT
CTCCTGTTGATGCTTTCCGATGAAGAATGACCACTGACGCGTCTCTGGCT
CCAATTCCCTTTGCCACGAATATTCGCCAGGGATCGTGGACTTCGGGCCT
CGAGGTATTCCGTCTTTTGCTGGAAGACGTGCGTCCCCGAGGGCGAAGTC
CTTCCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig129:256488..257494+

>mRNA_F-serratus_M_contig129.2138.1 ID=mRNA_F-serratus_M_contig129.2138.1|Name=mRNA_F-serratus_M_contig129.2138.1|organism=Fucus serratus male|type=CDS|length=504bp|location=Sequence derived from alignment at F-serratus_M_contig129:256488..257494+ (Fucus serratus male)
GACGGAGAAGGTGCATCGGGCGACAAGAAGTCTCAGCAGCTGAGGGAGGT
TTTGGCCGACGCTGTCAAGACCGGAAGAGGGGGCGGCGCTCCGAGCCTTG
CGGCTGATGGACGGAGAAGGTGCATCGGGCGACAAGAAGTCTCAGCAGCT
GAGGGAGGTTTTGGCCGACGCTGTCAAGACCGGAAGAGGGGGCGGCGCTC
CGAGCCTTGCGGCTGATGGTGGACAACAAGCAATCAGTCACCGAGAAGCA
GTTCGTCGGAGCCATGGAGGCGTGCATGCGGCAGGTGGACAACAAGCAAT
CAGTCACCGAGAAGCAGTTCGTCGGAGCCATGGAGGCGTGCATGCGGCAG
GGATCGTGGACTTCGGGCCTCGAGGTATTCCGTCTTTTGCTGGAAGACGT
GCGTCCCCGAGGGCGAAGTCCTTCCAAGGATCGTGGACTTCGGGCCTCGA
GGTATTCCGTCTTTTGCTGGAAGACGTGCGTCCCCGAGGGCGAAGTCCTT
CCAA
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