mRNA_F-serratus_M_contig1288.2126.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1288.2126.1
Unique NamemRNA_F-serratus_M_contig1288.2126.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1288.2126.1 vs. uniprot
Match: A0A6H5K9B1_9PHAE (Peptidase S59 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9B1_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.040e-33
Identity = 69/102 (67.65%), Postives = 75/102 (73.53%), Query Frame = 1 
Query:   25 PTARYFREPTHHDKADLDQVCRELRRVHLEGERK------ELCGVVADTGTGRDRCVLNRLLAMYPSQSTGGGGSGASGVALLSALEPMAVTPDVMDYRHSW 312
            PTARYF EPTHH+ A LD+VC ELRRV++   R       E  G   D G GRDRCVL  LLAMYPS+  GGG  GASGV+LLSALEPMAVTPDVMDYRHSW
Sbjct: 1827 PTARYFLEPTHHESAHLDKVCTELRRVYMPPPRPPAGLSLEKSGG-EDRGYGRDRCVLRCLLAMYPSRKAGGGVGGASGVSLLSALEPMAVTPDVMDYRHSW 1927
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1288.2126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9B1_9PHAE2.040e-3367.65Peptidase S59 domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1288contigF-serratus_M_contig1288:2388..2700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue6.7e-29
Seed eggNOG ortholog2880.D7FX93
Preferred nameNUP145
KEGG koko:K14297,ko:K18716,ko:K18720
KEGG TC1.I.1
KEGG Pathwayko03013,ko05164,map03013,map05164
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000972,GO:0000973,GO:0003674,GO:0003676,GO:0003723,GO:0005048,GO:0005198,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006325,GO:0006342,GO:0006344,GO:0006348,GO:0006355,GO:0006403,GO:0006405,GO:0006406,GO:0006409,GO:0006606,GO:0006607,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0008104,GO:0008139,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016458,GO:0016973,GO:0017038,GO:0017056,GO:0019219,GO:0019222,GO:0031080,GO:0031081,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031503,GO:0031967,GO:0031975,GO:0032386,GO:0032879,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034397,GO:0034398,GO:0034504,GO:0034613,GO:0034629,GO:0034641,GO:0035392,GO:0036228,GO:0040029,GO:0042277,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044464,GO:0044613,GO:0044614,GO:0045184,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046822,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050000,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051031,GO:0051049,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051640,GO:0051641,GO:0051649,GO:0051664,GO:0051668,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0080090,GO:0090304,GO:0090435,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.structural constituent of nuclear pore
EggNOG OGsKOG0845@1,KOG0845@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Exons1
Model size313
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929228.7699165-CDS-F-serratus_M_contig1288:2387..26991622929228.7699165-CDS-F-serratus_M_contig1288:2387..2699Fucus serratus maleCDSF-serratus_M_contig1288 2388..2699 +
1690962759.5671015-CDS-F-serratus_M_contig1288:2387..26991690962759.5671015-CDS-F-serratus_M_contig1288:2387..2699Fucus serratus maleCDSF-serratus_M_contig1288 2388..2699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1288.2126.1prot_F-serratus_M_contig1288.2126.1Fucus serratus malepolypeptideF-serratus_M_contig1288 2388..2699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1288.2126.1

>prot_F-serratus_M_contig1288.2126.1 ID=prot_F-serratus_M_contig1288.2126.1|Name=mRNA_F-serratus_M_contig1288.2126.1|organism=Fucus serratus male|type=polypeptide|length=104bp
GGRQRGNSPTARYFREPTHHDKADLDQVCRELRRVHLEGERKELCGVVAD
TGTGRDRCVLNRLLAMYPSQSTGGGGSGASGVALLSALEPMAVTPDVMDY
RHSW
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mRNA from alignment at F-serratus_M_contig1288:2388..2700+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1288.2126.1 ID=mRNA_F-serratus_M_contig1288.2126.1|Name=mRNA_F-serratus_M_contig1288.2126.1|organism=Fucus serratus male|type=mRNA|length=313bp|location=Sequence derived from alignment at F-serratus_M_contig1288:2388..2700+ (Fucus serratus male)
GGTGGCCGACAAAGAGGCAATTCCCCCACTGCCCGGTACTTCCGAGAGCC
CACCCACCACGACAAGGCGGACCTGGATCAGGTTTGCCGGGAGCTGAGGC
GAGTGCACCTCGAGGGGGAAAGGAAAGAGCTCTGCGGTGTCGTCGCAGAC
ACCGGGACCGGGCGAGACCGCTGCGTCCTGAACCGCTTGCTCGCCATGTA
CCCGTCGCAGTCGACCGGAGGTGGTGGTAGTGGCGCGTCAGGGGTTGCCC
TTCTTTCGGCGCTGGAGCCAATGGCAGTCACACCTGACGTCATGGACTAC
CGTCACTCGTGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1288:2388..2700+

>mRNA_F-serratus_M_contig1288.2126.1 ID=mRNA_F-serratus_M_contig1288.2126.1|Name=mRNA_F-serratus_M_contig1288.2126.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig1288:2388..2700+ (Fucus serratus male)
GGTGGCCGACAAAGAGGCAATTCCCCCACTGCCCGGTACTTCCGAGAGCC
CACCCACCACGACAAGGCGGACCTGGATCAGGTTTGCCGGGAGCTGAGGC
GAGTGCACCTCGAGGGGGAAAGGAAAGAGCTCTGCGGTGTCGTCGCAGAC
ACCGGGACCGGGCGAGACCGCTGCGTCCTGAACCGCTTGCTCGCCATGTA
CCCGTCGCAGTCGACCGGAGGTGGTGGTAGTGGCGCGTCAGGGGTTGCCC
TTCTTTCGGCGCTGGAGCCAATGGCAGTCACACCTGACGTCATGGACTAC
CGTCACTCGTGGGGTGGCCGACAAAGAGGCAATTCCCCCACTGCCCGGTA
CTTCCGAGAGCCCACCCACCACGACAAGGCGGACCTGGATCAGGTTTGCC
GGGAGCTGAGGCGAGTGCACCTCGAGGGGGAAAGGAAAGAGCTCTGCGGT
GTCGTCGCAGACACCGGGACCGGGCGAGACCGCTGCGTCCTGAACCGCTT
GCTCGCCATGTACCCGTCGCAGTCGACCGGAGGTGGTGGTAGTGGCGCGT
CAGGGGTTGCCCTTCTTTCGGCGCTGGAGCCAATGGCAGTCACACCTGAC
GTCATGGACTACCGTCACTCGTGG
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