mRNA_F-serratus_M_contig1288.2125.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1288.2125.1
Unique Name	mRNA_F-serratus_M_contig1288.2125.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig1288.2125.1 vs. uniprot
Match: A0A6H5K9B1_9PHAE (Peptidase S59 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9B1_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 5.270e-75
Identity = 152/256 (59.38%), Postives = 172/256 (67.19%), Query Frame = 1

Query:   22 PRWELPRRRNDKPDNYADLVKCMHGYAAAHAAAGAQCLHSSGGPYRGGGSSAGSGGNSSEDGPEWVLEQAWRLASAMWGQEEGEGKVQDLPVPGDVLTAASGFGSVGENDEASPAARREAAVAEWLANAVASCVPTGEWSAAAASAEAS------EEGRGTWRRVLELLSVRRVENAAEVAMDAGLPRLAVVLAA-ATQGIG--RPVRNGASRFLAQQVTLWQGNGADAFMPQEAFVVYQLLGREGFRDVGLRGVI 762
            PRW LPRRRND+P NY  LV+C+HGY   H  AGA              SS+   G ++ED PEWVLEQ+WRLASAMWGQEEGEG+VQDLP+PGD+  AA      G+ D  SPAARREAAV +WLA AV+SCVP+     +             +  R TWRRVLELLSVRRV +AA  AM AGLPRLAV+L A ATQG G  RP     S+FLAQQ   WQ  GADA MPQEAF V QLLGREGFRDVGLRG+I
Sbjct: 1517 PRWALPRRRNDRPQNYDTLVRCIHGYVEVHRLAGAAAT-----------SSSREAGAATEDSPEWVLEQSWRLASAMWGQEEGEGRVQDLPLPGDLQRAAD-LTLAGDCDGGSPAARREAAVGDWLARAVSSCVPSPSGGPSXXXXXXXXXXXXXDADRETWRRVLELLSVRRVHDAAVAAMAAGLPRLAVMLTAVATQGGGGGRPPARYGSKFLAQQAAQWQAAGADARMPQEAFSVVQLLGREGFRDVGLRGLI 1760

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1288.2125.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1288.2125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5K9B1_9PHAE	5.270e-75	59.38	Peptidase S59 domain-containing protein n=2 Tax=Ec...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1288	contig	F-serratus_M_contig1288:1490..2256 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	255.4
Seed ortholog evalue	2.9e-65
Seed eggNOG ortholog	2880.D7FX93
Preferred name	NUP145
KEGG ko	ko:K14297,ko:K18716,ko:K18720
KEGG TC	1.I.1
KEGG Pathway	ko03013,ko05164,map03013,map05164
KEGG Module	M00427
Hectar predicted targeting category	other localisation
GOs	GO:0000972,GO:0000973,GO:0003674,GO:0003676,GO:0003723,GO:0005048,GO:0005198,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006325,GO:0006342,GO:0006344,GO:0006348,GO:0006355,GO:0006403,GO:0006405,GO:0006406,GO:0006409,GO:0006606,GO:0006607,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0008104,GO:0008139,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016458,GO:0016973,GO:0017038,GO:0017056,GO:0019219,GO:0019222,GO:0031080,GO:0031081,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031503,GO:0031967,GO:0031975,GO:0032386,GO:0032879,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034397,GO:0034398,GO:0034504,GO:0034613,GO:0034629,GO:0034641,GO:0035392,GO:0036228,GO:0040029,GO:0042277,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044464,GO:0044613,GO:0044614,GO:0045184,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046822,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050000,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051031,GO:0051049,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051640,GO:0051641,GO:0051649,GO:0051664,GO:0051668,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0080090,GO:0090304,GO:0090435,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.	structural constituent of nuclear pore
EggNOG OGs	KOG0845@1,KOG0845@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03019,ko03036
Exons	1
Model size	769
Cds size	765
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929228.69378-CDS-F-serratus_M_contig1288:1489..2254	1622929228.69378-CDS-F-serratus_M_contig1288:1489..2254	Fucus serratus male	CDS	F-serratus_M_contig1288 1490..2254 +
1690962759.5535064-CDS-F-serratus_M_contig1288:1489..2254	1690962759.5535064-CDS-F-serratus_M_contig1288:1489..2254	Fucus serratus male	CDS	F-serratus_M_contig1288 1490..2254 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1288.2125.1	prot_F-serratus_M_contig1288.2125.1	Fucus serratus male	polypeptide	F-serratus_M_contig1288 1490..2254 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1288:1490..2256+
coding sequence from alignment at F-serratus_M_contig1288:1490..2256+

protein sequence of mRNA_F-serratus_M_contig1288.2125.1

>prot_F-serratus_M_contig1288.2125.1 ID=prot_F-serratus_M_contig1288.2125.1|Name=mRNA_F-serratus_M_contig1288.2125.1|organism=Fucus serratus male|type=polypeptide|length=255bp
RLDGCNVPRWELPRRRNDKPDNYADLVKCMHGYAAAHAAAGAQCLHSSGG
PYRGGGSSAGSGGNSSEDGPEWVLEQAWRLASAMWGQEEGEGKVQDLPVP
GDVLTAASGFGSVGENDEASPAARREAAVAEWLANAVASCVPTGEWSAAA
ASAEASEEGRGTWRRVLELLSVRRVENAAEVAMDAGLPRLAVVLAAATQG
IGRPVRNGASRFLAQQVTLWQGNGADAFMPQEAFVVYQLLGREGFRDVGL
RGVIG

mRNA from alignment at F-serratus_M_contig1288:1490..2256+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1288.2125.1 ID=mRNA_F-serratus_M_contig1288.2125.1|Name=mRNA_F-serratus_M_contig1288.2125.1|organism=Fucus serratus male|type=mRNA|length=767bp|location=Sequence derived from alignment at F-serratus_M_contig1288:1490..2256+ (Fucus serratus male)
CGCCTCGATGGGTGCAATGTCCCTCGCTGGGAGCTTCCGAGGCGTAGAAA
TGACAAGCCCGATAACTACGCCGATCTCGTGAAGTGCATGCACGGTTACG
CGGCCGCTCATGCGGCGGCGGGAGCGCAGTGCTTACACTCAAGCGGTGGC
CCCTACAGGGGAGGAGGGTCAAGCGCAGGAAGCGGGGGCAACTCTAGCGA
GGACGGGCCCGAATGGGTTCTGGAGCAAGCATGGCGGCTGGCCAGCGCCA
TGTGGGGTCAGGAGGAGGGCGAGGGCAAGGTGCAAGATCTCCCTGTCCCG
GGTGACGTTCTCACAGCCGCTTCTGGCTTCGGCAGCGTGGGTGAGAACGA
CGAGGCATCCCCGGCGGCTCGCAGGGAAGCTGCGGTTGCAGAATGGCTCG
CCAACGCCGTAGCCTCGTGCGTGCCCACCGGCGAGTGGAGTGCGGCGGCT
GCATCAGCGGAAGCGAGTGAAGAGGGACGAGGAACCTGGAGGAGAGTTTT
GGAGTTGCTAAGCGTGCGCCGCGTCGAAAATGCCGCCGAAGTTGCGATGG
ACGCTGGGCTGCCACGGCTGGCCGTCGTGCTCGCGGCCGCGACCCAGGGC
ATCGGCCGCCCGGTGCGGAATGGCGCGAGCAGATTTCTCGCCCAGCAAGT
GACGTTGTGGCAGGGCAACGGGGCCGACGCCTTCATGCCGCAGGAGGCGT
TCGTCGTGTACCAGCTGCTCGGACGCGAGGGTTTCCGGGACGTTGGGCTC
CGGGGAGTTATCGGCAA

Coding sequence (CDS) from alignment at F-serratus_M_contig1288:1490..2256+

>mRNA_F-serratus_M_contig1288.2125.1 ID=mRNA_F-serratus_M_contig1288.2125.1|Name=mRNA_F-serratus_M_contig1288.2125.1|organism=Fucus serratus male|type=CDS|length=1530bp|location=Sequence derived from alignment at F-serratus_M_contig1288:1490..2256+ (Fucus serratus male)
CGCCTCGATGGGTGCAATGTCCCTCGCTGGGAGCTTCCGAGGCGTAGAAA
TGACAAGCCCGATAACTACGCCGATCTCGTGAAGTGCATGCACGGTTACG
CGGCCGCTCATGCGGCGGCGGGAGCGCAGTGCTTACACTCAAGCGGTGGC
CCCTACAGGGGAGGAGGGTCAAGCGCAGGAAGCGGGGGCAACTCTAGCGA
GGACGGGCCCGAATGGGTTCTGGAGCAAGCATGGCGGCTGGCCAGCGCCA
TGTGGGGTCAGGAGGAGGGCGAGGGCAAGGTGCAAGATCTCCCTGTCCCG
GGTGACGTTCTCACAGCCGCTTCTGGCTTCGGCAGCGTGGGTGAGAACGA
CGAGGCATCCCCGGCGGCTCGCAGGGAAGCTGCGGTTGCAGAATGGCTCG
CCAACGCCGTAGCCTCGTGCGTGCCCACCGGCGAGTGGAGTGCGGCGGCT
GCATCAGCGGAAGCGAGTGAAGAGGGACGAGGAACCTGGAGGAGAGTTTT
GGAGTTGCTAAGCGTGCGCCGCGTCGAAAATGCCGCCGAAGTTGCGATGG
ACGCTGGGCTGCCACGGCTGGCCGTCGTGCTCGCGGCCGCGACCCAGGGC
ATCGGCCGCCCGGTGCGGAATGGCGCGAGCAGATTTCTCGCCCAGCAAGT
GACGTTGTGGCAGGGCAACGGGGCCGACGCCTTCATGCCGCAGGAGGCGT
TCGTCGTGTACCAGCTGCTCGGACGCGAGGGTTTCCGGGACGTTGGGCTC
CGGGGAGTTATCGGCCGCCTCGATGGGTGCAATGTCCCTCGCTGGGAGCT
TCCGAGGCGTAGAAATGACAAGCCCGATAACTACGCCGATCTCGTGAAGT
GCATGCACGGTTACGCGGCCGCTCATGCGGCGGCGGGAGCGCAGTGCTTA
CACTCAAGCGGTGGCCCCTACAGGGGAGGAGGGTCAAGCGCAGGAAGCGG
GGGCAACTCTAGCGAGGACGGGCCCGAATGGGTTCTGGAGCAAGCATGGC
GGCTGGCCAGCGCCATGTGGGGTCAGGAGGAGGGCGAGGGCAAGGTGCAA
GATCTCCCTGTCCCGGGTGACGTTCTCACAGCCGCTTCTGGCTTCGGCAG
CGTGGGTGAGAACGACGAGGCATCCCCGGCGGCTCGCAGGGAAGCTGCGG
TTGCAGAATGGCTCGCCAACGCCGTAGCCTCGTGCGTGCCCACCGGCGAG
TGGAGTGCGGCGGCTGCATCAGCGGAAGCGAGTGAAGAGGGACGAGGAAC
CTGGAGGAGAGTTTTGGAGTTGCTAAGCGTGCGCCGCGTCGAAAATGCCG
CCGAAGTTGCGATGGACGCTGGGCTGCCACGGCTGGCCGTCGTGCTCGCG
GCCGCGACCCAGGGCATCGGCCGCCCGGTGCGGAATGGCGCGAGCAGATT
TCTCGCCCAGCAAGTGACGTTGTGGCAGGGCAACGGGGCCGACGCCTTCA
TGCCGCAGGAGGCGTTCGTCGTGTACCAGCTGCTCGGACGCGAGGGTTTC
CGGGACGTTGGGCTCCGGGGAGTTATCGGC