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Homology
BLAST of mRNA_F-serratus_M_contig996.21246.1 vs. uniprot
Match: D7G0J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J1_ECTSI) HSP 1 Score: 315 bits (806), Expect = 1.100e-105 Identity = 164/232 (70.69%), Postives = 187/232 (80.60%), Query Frame = 1
Query: 16 RSAQGLDELSEVFPSPDDVVSEGEEASDDEEYGRRRVPKERWGTIDGCTPNERFFARMQGAKQGERMTTAVKTQAEKNKFDREVFQFLITPEMRRQLGGHP-AIQAIDFDRFAEKWNEDVGEMERNEVAGRLEVSGDVNKKINRKAPFDLQNWWTESKKDVNTARTVEQNKDCTSAMYRRNRINLSKRSTADRAAVGVTETGAQFSFPFVHVDLKTLPRPAPSAADEARYDE 708
++ + LD LSEVFP D SE E A+D EE RR PK RWGT+DGCTPNERFFARMQGA GERMTTAV TQAEK+KFDREVFQFL++PE+R+Q+ GH Q+I+FD FA KWNEDVGE+ERNEVAGRLEVSGD NKKINRKAPFDLQ+WWTES+K+VNTARTVEQNKD SAMY +NR+ LS+ STA+RAAVG+T TG FSFP VH TLPRPAPSA +DE
Sbjct: 7 QARKELDGLSEVFPLDDGDGSEDEGAADAEEDERRDAPKARWGTVDGCTPNERFFARMQGATPGERMTTAVITQAEKDKFDREVFQFLVSPEVRQQVAGHRRGTQSINFDAFAAKWNEDVGEIERNEVAGRLEVSGDANKKINRKAPFDLQSWWTESRKEVNTARTVEQNKDRLSAMYEKNRVRLSEPSTAERAAVGMTITGQTFSFPLVHNGRSTLPRPAPSATGGPEHDE 238
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 2 |
Model size | 710 |
Cds size | 708 |
Stop | 0 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932793.9668937-CDS-F-serratus_M_contig996:194941..195476 | 1622932793.9668937-CDS-F-serratus_M_contig996:194941..195476 | Fucus serratus male | CDS | F-serratus_M_contig996 194942..195476 - |
1690964478.7495043-CDS-F-serratus_M_contig996:194941..195476 | 1690964478.7495043-CDS-F-serratus_M_contig996:194941..195476 | Fucus serratus male | CDS | F-serratus_M_contig996 194942..195476 - |
1622932793.989943-CDS-F-serratus_M_contig996:195973..196146 | 1622932793.989943-CDS-F-serratus_M_contig996:195973..196146 | Fucus serratus male | CDS | F-serratus_M_contig996 195974..196146 - |
1690964478.758804-CDS-F-serratus_M_contig996:195973..196146 | 1690964478.758804-CDS-F-serratus_M_contig996:195973..196146 | Fucus serratus male | CDS | F-serratus_M_contig996 195974..196146 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig996.21246.1 >prot_F-serratus_M_contig996.21246.1 ID=prot_F-serratus_M_contig996.21246.1|Name=mRNA_F-serratus_M_contig996.21246.1|organism=Fucus serratus male|type=polypeptide|length=236bp
VAGSCRSAQGLDELSEVFPSPDDVVSEGEEASDDEEYGRRRVPKERWGTI DGCTPNERFFARMQGAKQGERMTTAVKTQAEKNKFDREVFQFLITPEMRR QLGGHPAIQAIDFDRFAEKWNEDVGEMERNEVAGRLEVSGDVNKKINRKA PFDLQNWWTESKKDVNTARTVEQNKDCTSAMYRRNRINLSKRSTADRAAV GVTETGAQFSFPFVHVDLKTLPRPAPSAADEARYDE back to topmRNA from alignment at F-serratus_M_contig996:194942..196146- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig996.21246.1 ID=mRNA_F-serratus_M_contig996.21246.1|Name=mRNA_F-serratus_M_contig996.21246.1|organism=Fucus serratus male|type=mRNA|length=1205bp|location=Sequence derived from alignment at F-serratus_M_contig996:194942..196146- (Fucus serratus male) GTCGCGGGATCCTGTCGAAGCGCGCAAGGGCTGGATGAGCTTTCCGAGGT
CTTCCCTAGCCCCGACGACGTTGTATCGGAAGGCGAGGAGGCATCTGATG
ACGAAGAGTATGGACGCCGCCGTGTACCCAAGGAGAGGTGGGGAACTATC
GATGGATGCACCCCAAATGAGCGGTGAGTCTTTCAACTGAGAGCACTGTC
CATCTACTACTAGAGTAAATCTCTTCTACTCCACCCGCACAGTTTGGGTG
AAAAGTATCGAGTTCCCCCGGATCATTTTTTTCCTTCTTTTTTGCTGCGC
CTCCTTCTTCAGTTACACAGATTTTTCCCTCCCGATTGTTTTGGGGGGTA
TGGTCTAAAGTCGTCAAAGCAGGTGTTTGCTGGTAGATGCCGCTCAGTGG
TCCAAAATCATCTTACGAAGGAAGAAAGGGGGGTGTCGTGTTATTTTTCA
AAAGCACGCAATCTGTGGGATGTTCTCTCGAGGCTACTGCTTCATTCTAT
AGATCGCCCCCCTCACTCGAATGTTCCCCCAGCGCTGCGAACCAATCTAG
TGGCTCAAGTTTACGGCGGTCGGTTTTGCTTTTCTTCTGACCTCCATTAC
GCCGGATACACGAAACTACCCATTGCTGCACTTGATGATGGACTCGTTTC
GTGTGTTGGTCGGCTCGCAGCTTCTTTGCTCGGATGCAAGGTGCAAAACA
AGGAGAGCGCATGACTACTGCCGTCAAGACTCAGGCAGAAAAAAACAAGT
TCGATCGCGAAGTTTTTCAGTTCTTGATCACCCCGGAGATGAGGCGGCAA
CTTGGTGGTCATCCTGCGATCCAAGCCATCGACTTCGATCGCTTTGCGGA
GAAGTGGAACGAGGACGTCGGCGAAATGGAGAGAAACGAGGTGGCCGGTC
GCTTGGAAGTCAGCGGCGATGTCAACAAGAAGATCAACCGCAAGGCGCCT
TTCGACCTGCAGAACTGGTGGACCGAATCAAAGAAAGACGTCAACACCGC
GCGCACGGTGGAGCAGAACAAAGACTGCACATCAGCGATGTACCGAAGAA
ATCGCATCAATCTTTCAAAGCGAAGCACCGCGGACCGAGCAGCCGTCGGC
GTGACCGAAACGGGAGCCCAATTTTCCTTCCCATTCGTACACGTCGATCT
CAAAACTCTACCACGGCCCGCCCCTTCGGCCGCCGATGAAGCTCGATACG
ATGAG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig996:194942..196146- >mRNA_F-serratus_M_contig996.21246.1 ID=mRNA_F-serratus_M_contig996.21246.1|Name=mRNA_F-serratus_M_contig996.21246.1|organism=Fucus serratus male|type=CDS|length=1416bp|location=Sequence derived from alignment at F-serratus_M_contig996:194942..196146- (Fucus serratus male) GTCGCGGGATCCTGTCGAAGCGCGCAAGGGCTGGATGAGCTTTCCGAGGT CTTCCCTAGCCCCGACGACGTTGTATCGGAAGGCGAGGAGGCATCTGATG ACGAAGAGTATGGACGCCGCCGTGTACCCAAGGAGAGGTGGGGAACTATC GATGGATGCACCCCAAATGAGCGGTCGCGGGATCCTGTCGAAGCGCGCAA GGGCTGGATGAGCTTTCCGAGGTCTTCCCTAGCCCCGACGACGTTGTATC GGAAGGCGAGGAGGCATCTGATGACGAAGAGTATGGACGCCGCCGTGTAC CCAAGGAGAGGTGGGGAACTATCGATGGATGCACCCCAAATGAGCGCTTC TTTGCTCGGATGCAAGGTGCAAAACAAGGAGAGCGCATGACTACTGCCGT CAAGACTCAGGCAGAAAAAAACAAGTTCGATCGCGAAGTTTTTCAGTTCT TGATCACCCCGGAGATGAGGCGGCAACTTGGTGGTCATCCTGCGATCCAA GCCATCGACTTCGATCGCTTTGCGGAGAAGTGGAACGAGGACGTCGGCGA AATGGAGAGAAACGAGGTGGCCGGTCGCTTGGAAGTCAGCGGCGATGTCA ACAAGAAGATCAACCGCAAGGCGCCTTTCGACCTGCAGAACTGGTGGACC GAATCAAAGAAAGACGTCAACACCGCGCGCACGGTGGAGCAGAACAAAGA CTGCACATCAGCGATGTACCGAAGAAATCGCATCAATCTTTCAAAGCGAA GCACCGCGGACCGAGCAGCCGTCGGCGTGACCGAAACGGGAGCCCAATTT TCCTTCCCATTCGTACACGTCGATCTCAAAACTCTACCACGGCCCGCCCC TTCGGCCGCCGATGAAGCTCGATACGATGAGCTTCTTTGCTCGGATGCAA GGTGCAAAACAAGGAGAGCGCATGACTACTGCCGTCAAGACTCAGGCAGA AAAAAACAAGTTCGATCGCGAAGTTTTTCAGTTCTTGATCACCCCGGAGA TGAGGCGGCAACTTGGTGGTCATCCTGCGATCCAAGCCATCGACTTCGAT CGCTTTGCGGAGAAGTGGAACGAGGACGTCGGCGAAATGGAGAGAAACGA GGTGGCCGGTCGCTTGGAAGTCAGCGGCGATGTCAACAAGAAGATCAACC GCAAGGCGCCTTTCGACCTGCAGAACTGGTGGACCGAATCAAAGAAAGAC GTCAACACCGCGCGCACGGTGGAGCAGAACAAAGACTGCACATCAGCGAT GTACCGAAGAAATCGCATCAATCTTTCAAAGCGAAGCACCGCGGACCGAG CAGCCGTCGGCGTGACCGAAACGGGAGCCCAATTTTCCTTCCCATTCGTA CACGTCGATCTCAAAACTCTACCACGGCCCGCCCCTTCGGCCGCCGATGA AGCTCGATACGATGAG back to top
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