mRNA_F-serratus_M_contig1288.2131.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1288.2131.1
Unique NamemRNA_F-serratus_M_contig1288.2131.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1288.2131.1 vs. uniprot
Match: A0A6H5JNQ0_9PHAE (KIX_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ0_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 4.620e-47
Identity = 95/110 (86.36%), Postives = 98/110 (89.09%), Query Frame = 1 
Query:  262 EDRAKQERSLRAEELRNIYQEDIRYFVLHGSSLLKKLHKTRQASHNSEQVPKLEQYVKEGHNALLYINRCHDTDHVPSAASLHSLEHTLIRVHKASNVLQVMIRDHSRTQ 591
            E+RAKQ RS RAEELR IYQEDI YFV HGSSLLKKLHKTR AS NSEQV KL QYVKEGHNALLYINRCH+T HVPSAASL SLEHTLIRVHKASN LQVMIRDHS+TQ
Sbjct:  315 EERAKQHRSRRAEELRTIYQEDIHYFVQHGSSLLKKLHKTRPASQNSEQVLKLVQYVKEGHNALLYINRCHETGHVPSAASLQSLEHTLIRVHKASNALQVMIRDHSKTQ 424
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BLAST of mRNA_F-serratus_M_contig1288.2131.1 vs. uniprot
Match: A0A835Z449_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z449_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.650e-13
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:  295 AEELRNIYQEDIRYFVLHGSSLLKKLHKTRQ--ASHNS---EQVPKLEQYVKEGHNALLYINRCHDTDHVPSAASLHSLEHTLIRVHKASNVLQVMI 570
            AE+LR  Y+ DIR FV  G S+L K   + +  A+H S   +Q+ KL QYV+EG NAL+Y+ RCH   HVPSA SL SLE TL +VH AS  L+ M+
Sbjct:  447 AEQLRRRYEADIRAFVQQGRSVLLKHDGSPRSMAAHGSGGADQIRKLRQYVREGQNALVYMERCHSRGHVPSAVSLQSLEQTLAKVHCASRTLRQMM 543
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BLAST of mRNA_F-serratus_M_contig1288.2131.1 vs. uniprot
Match: A0A836CHY1_9STRA (KIX_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHY1_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.650e-6
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  409 VPKLEQYVKEGHNALLYINRCHDTDHVPSAASLHSLEHTLIRVHKASNVLQVM 567
            V KL QY++EG NAL+Y+ RCH   H+PS  SL SL  TL +VHKAS  L+ M
Sbjct:   71 VRKLVQYIREGQNALMYMERCHLQHHIPSGPSLESLHLTLQKVHKASLALRSM 123
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1288.2131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JNQ0_9PHAE4.620e-4786.36KIX_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z449_9STRA1.650e-1351.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHY1_9STRA4.650e-656.60KIX_2 domain-containing protein n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1288contigF-serratus_M_contig1288:110928..114150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size956
Cds size954
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1288.2131.1prot_F-serratus_M_contig1288.2131.1Fucus serratus malepolypeptideF-serratus_M_contig1288 110928..114150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929228.498128-CDS-F-serratus_M_contig1288:110927..1111461622929228.498128-CDS-F-serratus_M_contig1288:110927..111146Fucus serratus maleCDSF-serratus_M_contig1288 110928..111146 +
1690962759.4806583-CDS-F-serratus_M_contig1288:110927..1111461690962759.4806583-CDS-F-serratus_M_contig1288:110927..111146Fucus serratus maleCDSF-serratus_M_contig1288 110928..111146 +
1622929228.514024-CDS-F-serratus_M_contig1288:111635..1117031622929228.514024-CDS-F-serratus_M_contig1288:111635..111703Fucus serratus maleCDSF-serratus_M_contig1288 111636..111703 +
1690962759.4912686-CDS-F-serratus_M_contig1288:111635..1117031690962759.4912686-CDS-F-serratus_M_contig1288:111635..111703Fucus serratus maleCDSF-serratus_M_contig1288 111636..111703 +
1622929228.5530028-CDS-F-serratus_M_contig1288:112356..1124771622929228.5530028-CDS-F-serratus_M_contig1288:112356..112477Fucus serratus maleCDSF-serratus_M_contig1288 112357..112477 +
1690962759.5028222-CDS-F-serratus_M_contig1288:112356..1124771690962759.5028222-CDS-F-serratus_M_contig1288:112356..112477Fucus serratus maleCDSF-serratus_M_contig1288 112357..112477 +
1622929228.5685906-CDS-F-serratus_M_contig1288:112663..1128161622929228.5685906-CDS-F-serratus_M_contig1288:112663..112816Fucus serratus maleCDSF-serratus_M_contig1288 112664..112816 +
1690962759.5133529-CDS-F-serratus_M_contig1288:112663..1128161690962759.5133529-CDS-F-serratus_M_contig1288:112663..112816Fucus serratus maleCDSF-serratus_M_contig1288 112664..112816 +
1622929228.5810716-CDS-F-serratus_M_contig1288:113531..1137001622929228.5810716-CDS-F-serratus_M_contig1288:113531..113700Fucus serratus maleCDSF-serratus_M_contig1288 113532..113700 +
1690962759.525356-CDS-F-serratus_M_contig1288:113531..1137001690962759.525356-CDS-F-serratus_M_contig1288:113531..113700Fucus serratus maleCDSF-serratus_M_contig1288 113532..113700 +
1622929228.594387-CDS-F-serratus_M_contig1288:113926..1141501622929228.594387-CDS-F-serratus_M_contig1288:113926..114150Fucus serratus maleCDSF-serratus_M_contig1288 113927..114150 +
1690962759.5338004-CDS-F-serratus_M_contig1288:113926..1141501690962759.5338004-CDS-F-serratus_M_contig1288:113926..114150Fucus serratus maleCDSF-serratus_M_contig1288 113927..114150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1288.2131.1

>prot_F-serratus_M_contig1288.2131.1 ID=prot_F-serratus_M_contig1288.2131.1|Name=mRNA_F-serratus_M_contig1288.2131.1|organism=Fucus serratus male|type=polypeptide|length=318bp
VSPTLSLLQQQGSGVVSPVNSLPTSLDPHDSFLGLEPIPLPDNTAFGSPT
PTPAQKQQKHKQRQQQVLLRRHQTGHGSGSAQSQIDVEDRAKQERSLRAE
ELRNIYQEDIRYFVLHGSSLLKKLHKTRQASHNSEQVPKLEQYVKEGHNA
LLYINRCHDTDHVPSAASLHSLEHTLIRVHKASNVLQVMIRDHSRTQQND
IPYGPGGGGGGADGSGGAGGSGGGGAAQRSCNRSHPSRQHPNRDFPTVLR
RPRVRPGPFDQSDPEPSPAAGKRGRESGNPLPTSLDPRDSILDLEPIPLR
DNAAFGSPTPTPPQEQQQ
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mRNA from alignment at F-serratus_M_contig1288:110928..114150+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1288.2131.1 ID=mRNA_F-serratus_M_contig1288.2131.1|Name=mRNA_F-serratus_M_contig1288.2131.1|organism=Fucus serratus male|type=mRNA|length=3223bp|location=Sequence derived from alignment at F-serratus_M_contig1288:110928..114150+ (Fucus serratus male)
GTCAGCCCGACCTTGAGCCTCCTTCAGCAGCAGGGAAGCGGGGTCGTGAG
TCCGGTAAACTCTCTGCCGACTTCACTGGACCCCCACGATTCTTTTCTCG
GCCTGGAGCCCATTCCTTTGCCTGACAACACTGCCTTTGGCTCCCCAACG
CCGACTCCGGCCCAGAAACAACAGAAGCACAAACAACGGCAGCAACAGGT
GCTTTTGCGCCGCCACCAGGTATAGGCAGAGAGGCGCCCCCCCCCCCCCT
TTGTAACCCCCCCCCCCCCCCCCCCCCCACTCTCCTCCAGTCCTTCTCCG
TGGCTGACGTGGCACAACAATAGTTTTTAATACTGCCTTCTCGTTTGTGG
TTTGTTTGTGTGCGTTTTTTGTTATTGGTGTGTTGTTGTTTCTTCAGGAG
GAGGGGATTGATTAAGTACACTCCACTCGCCTTTTTTACACATGTGTGGA
TTGTTTTGGTTCGATGCCACCCAGGCGAGGAAGACCTCAAAAGGCTCGGA
ACTGCGTCTGTCCGTGCCCACAAACCGTTTCCATTGTTCGTTTTTGGAGG
TAGAGATGCCGTCGGGTCGGTAATTTACCGTCGGTACTATTGTCCCTTTC
CTATGTTGAGTTTTCCAGTTGTATGGAAAACCGTGGAAGAGAATGTTGGC
TTGCTCCAGCTCTTCTCCGCCTCAAAAGGACGTATCCTGGTATTATTTGT
TGATGCAGACAGGACACGGGTCAGGCAGTGCGCAGAGCCAGATCGATGTG
GAAGACCGGGCAAAACAGGAACGCAGGTTAGCGTGTATGTGTATTTGTTT
ATAGATAAAAATGAACGCACGTAAACCTTCTCTTAGCGTTCACCCAATTA
GGGGCGGGGAGAGGGTGTCAAAGCGTTTAGGCAGGAAGATAGGCTGTCAG
GAGAAAACTCTCCGTGGGGTATAATTGGGTTATATTCCTCCATGGTAGTA
GCACGGGGTCAGCAGTATAATATAGCGGAGAAACTTGCCGTGAAACTGTA
CACTTACATAATCGCCATATTATAGTATATACCAGGTAGTATAAAACGTG
CAGGTGCACCAAAACAGAGGCAATATTTCTTGAATTGTACCTTGTGTTTT
ATGTGTTTGTGTATTTATTAAATTGCACATTGCGTGTGTGTATGTGTTTT
TGGTCAAAAGCACATAATCGCGAAATCAGGCATCCCCGCAGTGGGAGAGT
TACATCTCGGAGGGCATTGATGGCCCATCTGCCGTGTGGGGCAAGGTTCA
TTGTTGTACACACGGTTTGTTCTCTCCATTTCGCTTCTACTATGATATAC
CCTGAAAAACACAAAGTGGTGATGAAGCAAGTCTTTTGAGAAAAGGAAAT
CGTTCATGCAAACAGTAAGAGTATGGTTTTGAACGCCCTCTTGTCTGTCG
TGTCTTGGGCGGGGATTGGACTCACACAGTCTCCGAGCCGAGGAGCTGCG
CAACATCTACCAGGAGGATATCCGATATTTCGTTCTACACGGATCAAGCC
TTCTCAAGAAGCTGCACAAGACCAGACAAGCCTCCCATAACTCGGAGCAG
GTGAGCAAGCCCGCACTAAGCGAGTGCGGAGGATGGTGTCGCGTTCGAAT
ACTGTACCTGGATAGCAGTCGTTCGCAACAAGGCTTGCGATGGTGTTTTA
TGTTTCGGTTGCTGCAACTCCCCACTCCCATCTCGACATTTTCTTCGTTT
TTTCCCGGTTTGGTTTTGTTTGTATTTTTCCACCAGGTGCCGAAACTGGA
GCAATACGTGAAGGAGGGCCATAACGCCCTACTGTACATCAACCGCTGCC
ACGACACAGACCACGTGCCCTCGGCTGCCAGCCTACACTCCCTTGAACAC
ACCCTCATTCGAGTCCACAAGGCCAGCAACGTCCTGCAGGTGGTTTAACC
TAGCCGTGCTCTCTGGCCACTGACTGTAAAGAGAGATACATTTGGGAAAT
ACGCCTTACCTAGTATGTCTATATATATATATATATTGTGTCTTTTTTTT
CTGTGTGTGTGTGCGTGTCTGTTGTGTTTTTCTTGTGTGAAGTGTGTGGA
TCTGGCTGCGTTTTTTTTGCTCTGGCAGTGTCAGGCTGTGTTTCTGTGTG
TTGGTTATGTCTATTAATAGTGAGCTACAGTACACATACCGGCGCAGTCC
GCTGCTGTTATACTACGCTGGTCTCGTTTTTTTAGCTAATCGCATCTACC
AATTGGGGATCAGTGTGTGTGTATGTGTTTGTGCCAAGTGTTGTTCTTTA
TTCAAATGCTAACAACCGCGCAATCCGCCCTTGTTATCCTATAAATAGTA
GTTACTCTATACTATACTATGCTTGCGTTGACTCCCTTAAGGAGGGGGAT
CAGTTCTACGCTTGTGTAAGGGGTCATTTTGTTTGTTTGTTTGAGTTTGG
TGTTTTCGTGTGAGTATGCACAACGACCCCACAATGAGGGTCCTCTCGTT
CTACGCTTCGAAATGCCCCCCCCCCCCCCCCTCCCCACGGAGAAATGCCT
GTAAGTGAACACCTGTCTTCAAAATACCCTAATAAGGTCTACCCTCGTGT
CGCCTATTACCAGTCGTTTTTTAAATATATACACATAAAATGTTCGTTGT
GCAGGTCATGATTCGAGACCACTCAAGGACCCAGCAGAATGACATCCCAT
ACGGCCCAGGAGGGGGCGGCGGTGGTGCAGACGGTTCTGGCGGTGCAGGT
GGTTCCGGTGGCGGTGGAGCAGCCCAGCGCAGCTGCAACCGGAGTCACCC
CAGCCGCCAGCATCCCAACCGAGGTCCGTTTTAGTGTTACATTTGGTTGT
ACCTACAGAGGTGATGCATTCGCCGCCGCTCCGTTGGAAGCAACAGCAGC
AGCCCCAAGAAGTCTTCTCGTCCCAGCGATGCTATTCACGTACACGAAAA
CTAAACCAGCTGCGAATGACGTGTATTTTTTCTTGTTTCGTTTGGTGTGT
AAACACGCAAAACCTTTGTTCCCGCCGATACACGTCTCTTCGCGCACAGA
TTTCCCGACTGTTCTCCGGCGACCACGGGTACGGCCCGGCCCATTCGACC
AGTCTGACCCTGAGCCTTCTCCAGCAGCAGGGAAGCGAGGTCGTGAGTCC
GGTAACCCCCTGCCGACTTCACTGGACCCCCGCGACTCGATCCTCGACCT
GGAGCCCATTCCTTTGCGTGACAATGCTGCCTTTGGCTCCCCAACGCCGA
CTCCGCCCCAGGAACAACAGCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1288:110928..114150+

>mRNA_F-serratus_M_contig1288.2131.1 ID=mRNA_F-serratus_M_contig1288.2131.1|Name=mRNA_F-serratus_M_contig1288.2131.1|organism=Fucus serratus male|type=CDS|length=1908bp|location=Sequence derived from alignment at F-serratus_M_contig1288:110928..114150+ (Fucus serratus male)
GTCAGCCCGACCTTGAGCCTCCTTCAGCAGCAGGGAAGCGGGGTCGTGAG
TCCGGTAAACTCTCTGCCGACTTCACTGGACCCCCACGATTCTTTTCTCG
GCCTGGAGCCCATTCCTTTGCCTGACAACACTGCCTTTGGCTCCCCAACG
CCGACTCCGGCCCAGAAACAACAGAAGCACAAACAACGGCAGCAACAGGT
GCTTTTGCGCCGCCACCAGGTCAGCCCGACCTTGAGCCTCCTTCAGCAGC
AGGGAAGCGGGGTCGTGAGTCCGGTAAACTCTCTGCCGACTTCACTGGAC
CCCCACGATTCTTTTCTCGGCCTGGAGCCCATTCCTTTGCCTGACAACAC
TGCCTTTGGCTCCCCAACGCCGACTCCGGCCCAGAAACAACAGAAGCACA
AACAACGGCAGCAACAGGTGCTTTTGCGCCGCCACCAGACAGGACACGGG
TCAGGCAGTGCGCAGAGCCAGATCGATGTGGAAGACCGGGCAAAACAGGA
ACGCAGACAGGACACGGGTCAGGCAGTGCGCAGAGCCAGATCGATGTGGA
AGACCGGGCAAAACAGGAACGCAGTCTCCGAGCCGAGGAGCTGCGCAACA
TCTACCAGGAGGATATCCGATATTTCGTTCTACACGGATCAAGCCTTCTC
AAGAAGCTGCACAAGACCAGACAAGCCTCCCATAACTCGGAGCAGTCTCC
GAGCCGAGGAGCTGCGCAACATCTACCAGGAGGATATCCGATATTTCGTT
CTACACGGATCAAGCCTTCTCAAGAAGCTGCACAAGACCAGACAAGCCTC
CCATAACTCGGAGCAGGTGCCGAAACTGGAGCAATACGTGAAGGAGGGCC
ATAACGCCCTACTGTACATCAACCGCTGCCACGACACAGACCACGTGCCC
TCGGCTGCCAGCCTACACTCCCTTGAACACACCCTCATTCGAGTCCACAA
GGCCAGCAACGTCCTGCAGGTGCCGAAACTGGAGCAATACGTGAAGGAGG
GCCATAACGCCCTACTGTACATCAACCGCTGCCACGACACAGACCACGTG
CCCTCGGCTGCCAGCCTACACTCCCTTGAACACACCCTCATTCGAGTCCA
CAAGGCCAGCAACGTCCTGCAGGTCATGATTCGAGACCACTCAAGGACCC
AGCAGAATGACATCCCATACGGCCCAGGAGGGGGCGGCGGTGGTGCAGAC
GGTTCTGGCGGTGCAGGTGGTTCCGGTGGCGGTGGAGCAGCCCAGCGCAG
CTGCAACCGGAGTCACCCCAGCCGCCAGCATCCCAACCGAGGTCATGATT
CGAGACCACTCAAGGACCCAGCAGAATGACATCCCATACGGCCCAGGAGG
GGGCGGCGGTGGTGCAGACGGTTCTGGCGGTGCAGGTGGTTCCGGTGGCG
GTGGAGCAGCCCAGCGCAGCTGCAACCGGAGTCACCCCAGCCGCCAGCAT
CCCAACCGAGATTTCCCGACTGTTCTCCGGCGACCACGGGTACGGCCCGG
CCCATTCGACCAGTCTGACCCTGAGCCTTCTCCAGCAGCAGGGAAGCGAG
GTCGTGAGTCCGGTAACCCCCTGCCGACTTCACTGGACCCCCGCGACTCG
ATCCTCGACCTGGAGCCCATTCCTTTGCGTGACAATGCTGCCTTTGGCTC
CCCAACGCCGACTCCGCCCCAGGAACAACAGCAGATTTCCCGACTGTTCT
CCGGCGACCACGGGTACGGCCCGGCCCATTCGACCAGTCTGACCCTGAGC
CTTCTCCAGCAGCAGGGAAGCGAGGTCGTGAGTCCGGTAACCCCCTGCCG
ACTTCACTGGACCCCCGCGACTCGATCCTCGACCTGGAGCCCATTCCTTT
GCGTGACAATGCTGCCTTTGGCTCCCCAACGCCGACTCCGCCCCAGGAAC
AACAGCAG
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