mRNA_F-serratus_M_contig1287.2123.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Match: A0A194RJV9_PAPMA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A194RJV9_PAPMA) HSP 1 Score: 61.6 bits (148), Expect = 4.180e-9 Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 1
Query: 10 DAWISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVGKLDLVIR-SKTDHPVTLHDVYYVPDLGFNLFS 243
D W DSGAT HMTR +D MYD + P HR I++ + VQ +GK+++ + +K +H + + +V ++P L NL S
Sbjct: 218 DDWYIDSGATMHMTRRSDWMYDEQSPPIHR--IMVANSEAIPVQSMGKVNIQTKLNKDEHQIQVRNVLFIPKLSTNLLS 294
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Match: UPI001F12C045 (uncharacterized protein LOC124543428 n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F12C045) HSP 1 Score: 59.7 bits (143), Expect = 1.940e-8 Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 10 DAWISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVGKLDLVIR-SKTDHPVTLHDVYYVPDLGFNLFS 243
D W DSGAT HMTR +D MYD + P HR ++ + VQ +GK+++ + +K +H + + +V ++P L NL S
Sbjct: 121 DDWYIDSGATMHMTRRSDWMYDEQSPPVHRIKV--ANSEAIPVQSMGKVNIQTKLNKDEHRIQVRNVLFIPKLTTNLLS 197
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Match: UPI001C35A33D (Uncharacterized protein n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001C35A33D) HSP 1 Score: 52.8 bits (125), Expect = 5.320e-6 Identity = 27/79 (34.18%), Postives = 45/79 (56.96%), Query Frame = 1
Query: 10 DAWISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVGKLDLVIR-SKTDHPVTLHDVYYVPDLGFNLFS 243
D W DSGAT H+TR +D MYD PP + I++ + V +GK+++ K +H + + +V ++P++ NL S
Sbjct: 243 DDWYIDSGATMHITRCSDWMYDLEPPPIQK--IMVANNEALSVHNMGKVNIQTNICKDEHLIQVRNVLFIPEVSANLLS 319
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Match: A0A2K3MQW2_TRIPR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MQW2_TRIPR) HSP 1 Score: 51.2 bits (121), Expect = 1.910e-5 Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1
Query: 16 WISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVGKLDLVIRSKTDHPVTLHDVYYVPDLGFNLFS 243
WISD+GA+ HMT A M+ + R S S +++GDGS + +G D I+ K + + LHDV VPDL NL S
Sbjct: 339 WISDTGASNHMTGTASMLSNIRQSSGTDS-VLIGDGSPLPIHGIG--DSFIKQK-NITLPLHDVLLVPDLTKNLLS 410
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Match: A0A2Z6LMX1_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6LMX1_TRISU) HSP 1 Score: 51.2 bits (121), Expect = 1.910e-5 Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1
Query: 16 WISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVGKLDLVIRSKTDHPVTLHDVYYVPDLGFNLFS 243
WISD+GA+ HMT A M+ + R S S +++GDGS + +G D I+ K + + LHDV VPDL NL S
Sbjct: 339 WISDTGASNHMTGTASMLNNIRQSSGTDS-VLIGDGSPLPIHGIG--DSFIKQK-NITLPLHDVLLVPDLTKNLLS 410
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Match: UPI001E662BBE (uncharacterized protein LOC123723402 n=1 Tax=Papilio machaon TaxID=76193 RepID=UPI001E662BBE) HSP 1 Score: 48.5 bits (114), Expect = 8.170e-5 Identity = 25/62 (40.32%), Postives = 38/62 (61.29%), Query Frame = 1
Query: 10 DAWISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVGKLDLVIR-SKTDHPV 192
D W DSGAT HMTR +D MYD + P HR I++ + VQ +GK+++ + +K +H +
Sbjct: 103 DDWYIDSGATMHMTRRSDWMYDEQSPPIHR--IMVANSEAIPVQSMGKVNIQTKLNKDEHQI 162
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Match: A0A2Z6NS08_TRISU (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NS08_TRISU) HSP 1 Score: 49.3 bits (116), Expect = 9.030e-5 Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 1
Query: 16 WISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVGKLDLVIRSKTDHPVTLHDVYYVPDLGFNLFS 243
WISD+GA+ HMT M+++ R S S +++GDGS + +G D I+ + + + LHDV VPDL NL S
Sbjct: 339 WISDTGASNHMTGKTSMLHNIRQCSGTDS-VLIGDGSPLPIHGIG--DSFIK-QNNITLPLHDVLLVPDLTKNLLS 410
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Match: A0A5J4Z9D8_PORPP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z9D8_PORPP) HSP 1 Score: 49.3 bits (116), Expect = 9.200e-5 Identity = 30/80 (37.50%), Postives = 41/80 (51.25%), Query Frame = 1
Query: 4 VNDAWISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVGKLDLVIRSKTDHPVTLHDVYYVPDLGFNLFS 243
+ AWI DSGA++HMT + RP S ++ L DG +G+ S T VTL+DV YVP L ++L S
Sbjct: 299 TSQAWILDSGASSHMTGEVSRLRTRRPCS---DKVRLADGRTVSAVAIGQ------SHTAEGVTLNDVLYVPHLSYSLLS 369 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1287.2123.1 >prot_F-serratus_M_contig1287.2123.1 ID=prot_F-serratus_M_contig1287.2123.1|Name=mRNA_F-serratus_M_contig1287.2123.1|organism=Fucus serratus male|type=polypeptide|length=88bp EVNDAWISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVGback to top mRNA from alignment at F-serratus_M_contig1287:79679..79942- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1287.2123.1 ID=mRNA_F-serratus_M_contig1287.2123.1|Name=mRNA_F-serratus_M_contig1287.2123.1|organism=Fucus serratus male|type=mRNA|length=264bp|location=Sequence derived from alignment at F-serratus_M_contig1287:79679..79942- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1287:79679..79942- >mRNA_F-serratus_M_contig1287.2123.1 ID=mRNA_F-serratus_M_contig1287.2123.1|Name=mRNA_F-serratus_M_contig1287.2123.1|organism=Fucus serratus male|type=CDS|length=528bp|location=Sequence derived from alignment at F-serratus_M_contig1287:79679..79942- (Fucus serratus male)back to top |