mRNA_F-serratus_M_contig1286.2106.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1286.2106.1
Unique NamemRNA_F-serratus_M_contig1286.2106.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE)

HSP 1 Score: 378 bits (970), Expect = 8.800e-115
Identity = 208/322 (64.60%), Postives = 229/322 (71.12%), Query Frame = 2
Query:   38 GAVGSRAFVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLRRETCCPVCRSPMQESEIIDFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGG----------WVGSTKLERLELELREMEKKRAGAKAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQKLRVEDLVQFFK 973
            G VGS AFVDSVV QLREDG     ECP+C E PM +PALT CAHL+C  CL+DCLRRE CCPVCRSPM  ++II+   S    K              A  R  P                                        W+GSTKL RLELELREM KK  GAKAVVFSQWT+MLDLAE S+ RGGWTFRRLDG+MSQQ+RESAL+ F++D SVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVE+QAIDRIHRLGQLN+VSVKRFVV+ TVEDKMLALQEVKGRMAK+ALA+GS  ESQKLRVEDL+QFFK
Sbjct: 1307 GGVGSLAFVDSVVDQLREDGEMAKEECPVCLEEPMSSPALTPCAHLICLHCLRDCLRREACCPVCRSPMTTADIIEVSASQPTGKAV------------AAPRKPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWIGSTKLARLELELREMRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEEQAIDRIHRLGQLNEVSVKRFVVSGTVEDKMLALQEVKGRMAKNALAAGSANESQKLRVEDLIQFFK 1616          
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A6V1XFX6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XFX6_HETAK)

HSP 1 Score: 207 bits (528), Expect = 7.600e-62
Identity = 111/177 (62.71%), Postives = 133/177 (75.14%), Query Frame = 2
Query:  446 WVGSTKLERLELELREMEKKRAGA-KAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQKLRVEDLVQFFK 973
            W GS KL+ LE EL  M +    A KAVVFSQWT MLDL E  L R GW   RLDGSMSQQ+RE ALE F+++  + VML+SLKAGGVGLNLT AS V L+DPWWNPA+E QAIDR+HRLGQ   V V+R VV DTVE K+LALQE K ++A++AL SG L E+ KL++ED++ FFK
Sbjct:   17 WQGSAKLDCLERELGAMRRGGDPARKAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNLTQASLVFLIDPWWNPAIEAQAIDRVHRLGQTRAVQVRRLVVRDTVEGKLLALQERKKQLAQTALQSGKLEEASKLKLEDMIDFFK 193          
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A425DCE9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DCE9_9STRA)

HSP 1 Score: 217 bits (552), Expect = 3.600e-61
Identity = 127/308 (41.23%), Postives = 180/308 (58.44%), Query Frame = 2
Query:   59 FVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLRRETCCPVCRSPMQESEII--DFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGGWVGSTKLERLELELREMEKKRAGAKAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQ--KLRVEDLVQFF 970
            ++ + + +++++G     ECP+C ++P VAP LT CAHL+C AC+   L    CCPVCR+ +   ++I  D PD          T+G+   D+  +  + PL                             W GS KL +L ++L  +E   AG K VVFSQWT+MLDL + +L + G+T  R DGS+ Q  RE  L  F++   V V+++SLKAGGVGLNLTAAS VI++DPWWNP +EDQAIDR+HRLGQ  DV VK+++V  TVED +L LQ+ K  +A + LA+   G     +L + DL+ FF
Sbjct:  288 YIKNRILEIQDEGLE-CQECPVCLDVP-VAPVLTPCAHLMCHACVVAFLSNGGCCPVCRAHISPDQLIRVDPPDKP--------TTGDNPPDDD-DNGTAPL-----------------------------WAGSAKLTQLVVDLNSIE---AGRKVVVFSQWTHMLDLIQSTLHQHGYTHCRFDGSLKQDDREKVLHRFNTQPDVQVLVISLKAGGVGLNLTAASVVIMMDPWWNPGIEDQAIDRVHRLGQTRDVLVKKYIVEGTVEDMILTLQQRKATLASTVLATSKAGADNDWRLSLADLLTFF 552          
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A485LGA6_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGA6_9STRA)

HSP 1 Score: 223 bits (569), Expect = 4.510e-61
Identity = 124/315 (39.37%), Postives = 180/315 (57.14%), Query Frame = 2
Query:   41 AVGSRAFVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLRRE---TCCPVCRSPMQESEIIDFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGGWVGSTKLERLELELREMEKKRAGAKAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQ--KLRVEDLVQFF 970
            A   + ++ + + +++E+G +   ECP+C ++P VAP LT CAHLLCK C+  C       + CPVCR+ +    +I       +  G  + SG                                           GW GS KL +L ++L+ ++  R   K +VFSQWT+MLDL E +L + G++  R DGS+ Q+ RE  L  F++D +V V+++SLKAGGVGLNLTAAS VI++DPWWNP +EDQAIDR+HR+GQ  DV VK+++V DTVED +L LQ+ K  +A + LAS   G     +L + DL++FF
Sbjct:  716 ATDEQTYIKNRILEIQEEGLD-CQECPVCLDVP-VAPVLTPCAHLLCKNCILTCFDNHGEASGCPVCRAAVSADALIAIEPPEKVSPGKDEASG-------------------------------------------GWAGSAKLNQLVVDLKSIDATR---KVIVFSQWTHMLDLVESTLVQHGYSHARFDGSLKQEDRERVLNRFNADPAVRVLVISLKAGGVGLNLTAASVVIMMDPWWNPGIEDQAIDRVHRIGQTRDVIVKKYIVQDTVEDMILQLQQRKATLASTVLASAKAGAEHDGRLSLVDLLKFF 982          
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: W4GNE1_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=15 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GNE1_9STRA)

HSP 1 Score: 217 bits (552), Expect = 1.240e-58
Identity = 127/308 (41.23%), Postives = 180/308 (58.44%), Query Frame = 2
Query:   59 FVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLRRETCCPVCRSPMQESEII--DFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGGWVGSTKLERLELELREMEKKRAGAKAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQ--KLRVEDLVQFF 970
            ++ + + +++++G     ECP+C ++P VAP LT CAHL+C AC+   L    CCPVCR+ +   ++I  D PD          T+G+   D+  +  + PL                             W GS KL +L ++L  +E   AG K VVFSQWT+MLDL + +L + G+T  R DGS+ Q  RE  L  F++   V V+++SLKAGGVGLNLTAAS VI++DPWWNP +EDQAIDR+HRLGQ  DV VK+++V  TVED +L LQ+ K  +A + LA+   G     +L + DL+ FF
Sbjct:  764 YIKNRILEIQDEGLE-CQECPVCLDVP-VAPVLTPCAHLMCHACVVAFLSNGGCCPVCRAHISPDQLIRVDPPDKP--------TTGDNPPDDD-DNGTAPL-----------------------------WAGSAKLTQLVVDLNSIE---AGRKVVVFSQWTHMLDLIQSTLHQHGYTHCRFDGSLKQDDREKVLHRFNTQPDVQVLVISLKAGGVGLNLTAASVVIMMDPWWNPGIEDQAIDRVHRLGQTRDVLVKKYIVEGTVEDMILTLQQRKATLASTVLATSKAGADNDWRLSLADLLTFF 1028          
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A2P4X6Z0_9STRA (DNA repair protein RAD5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin, p n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X6Z0_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.610e-58
Identity = 128/317 (40.38%), Postives = 181/317 (57.10%), Query Frame = 2
Query:   56 AFVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLRR--ETCCPVCRSPMQESEIIDFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGGWVGSTKLERLELELREMEKKRAGA------KAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGE---SQKLRVEDLVQFFK 973
            +++ SV+ Q+ EDG   S ECPIC + P  A  LT CAH+LC  CL+D L    E  CPVCR+ +  +++   P  +        TS   + D +A   +    +     T +   +G                 S KL++L  +L+ ++ +   A      K VVFSQWT+MLD+    LTR  ++    +G ++Q+ RE  L  F+ D +V V+++SLKAGGVGLNLT AS VILLDPWWNP VE+QAIDR+HRLGQ  DV VKR+VV DTVED +L LQ+ K ++AK  L      +   S++L ++DL  FF+
Sbjct:   30 SYIQSVIAQV-EDGLE-SQECPICLDPPQNA-VLTPCAHVLCDQCLRDSLANDPENGCPVCRTVVDMAKVFKLPPPS--------TSKVQDRDSKASGPTNNTLVEEIKCTTADDDTG---------------FESAKLQQLLRDLKAIKVENNNASPEQKRKVVVFSQWTSMLDMVSELLTRNSFSHCTFNGGLNQEARERVLSKFAKDPNVEVLVISLKAGGVGLNLTCASVVILLDPWWNPGVEEQAIDRVHRLGQTQDVIVKRYVVNDTVEDMILQLQQRKEKLAKHVLVVSKAHDERRSERLNLDDLRSFFR 320          
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A024UTG2_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTG2_9STRA)

HSP 1 Score: 215 bits (548), Expect = 3.640e-58
Identity = 123/309 (39.81%), Postives = 180/309 (58.25%), Query Frame = 2
Query:   56 AFVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLRR--ETCCPVCRSPMQESEIIDFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGGWVGSTKLERLELELREMEKKRAGAKAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQ--KLRVEDLVQFF 970
            A++ + + +++E+G +   ECP+C ++P  AP LT C HL+CK C+   L      CCPVCR+ +   +++                                P  +  ++AS+             ++ G W GS KL++L  +L+ +E   AG K VVFSQWT+MLDL E +L + G++  R DGS+ Q  RE  L  F+S+  V V+++SLKAGGVGLNLTAAS VI++DPWWNP +EDQAIDR+HRLGQ  DV VK+++V DTVE  +L LQ+ K  +A + LA+   G     +L + DL++FF
Sbjct:  730 AYIKNRILEIQEEGLD-CQECPVCLDVP-TAPVLTPCGHLMCKECVLGFLNAGATACCPVCRADVTPDQLVPIDP----------------------------PEKLLSSSASTD------------NAHGMWAGSAKLKQLVSDLKSIE---AGRKVVVFSQWTHMLDLVETTLQQHGYSHCRFDGSLKQDDRERVLHRFNSNPDVQVLVISLKAGGVGLNLTAASVVIMMDPWWNPGIEDQAIDRVHRLGQTRDVLVKKYIVEDTVEGMILQLQQRKATLASTVLATSKSGAENDGRLSLADLLKFF 993          
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A453AHJ8_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453AHJ8_AEGTS)

HSP 1 Score: 202 bits (513), Expect = 8.110e-58
Identity = 126/317 (39.75%), Postives = 165/317 (52.05%), Query Frame = 2
Query:   29 GKRGAVGSRAFVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLRRET--CCPVCRSPMQESEIIDFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGGWVGSTKLERLELELREMEKKRAGAKAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQKLRVEDLVQFFK 973
            G R  V  RAFV+ VV ++R+     + ECPIC E     P +T CAH +C+ CL  C        CP+CRSP+ ++++I  P                                              VQ R    +K  W  S K+ RL   L ++ KK  G K++VFSQ+T+  DL E  L + G  F R DG ++Q+ RE  L  FS      V+L+SLKAGGVGLNLTAAS V L+DPWWNPAVE+QAI RIHR+GQ   V V+RF+V DTVE++M  +Q  K RM   AL    +  S   R+E+L   FK
Sbjct:   67 GCRAIVPPRAFVEDVVEEIRQ---GTAAECPICLESTSDDPVITPCAHRMCRECLLSCWSTPAGGACPICRSPITKADLIMLP----------------------------------------------VQCRYEVDAKNNWKDSCKVVRLLATLEDLGKK--GEKSIVFSQFTSFFDLLEIPLNQKGIKFLRFDGKVTQKHREKVLNEFSQSKDKLVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRAVHVRRFIVKDTVEERMQQVQARKQRMIAGALTDEEVRSS---RIEELKMLFK 329          
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A6G0XYJ5_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYJ5_9STRA)

HSP 1 Score: 211 bits (537), Expect = 1.030e-56
Identity = 121/311 (38.91%), Postives = 181/311 (58.20%), Query Frame = 2
Query:   53 RAFVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLR---RETCCPVCRSPMQESEIIDFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGGWVGSTKLERLELELREMEKKRAGAKAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQ--KLRVEDLVQFF 970
            ++++ + + +++E+G +   ECP+C E+P  +P LT CAHLLCK+C+   L    +E  CPVCR+ +   ++I                         E    P P +                          W GS+KL +L  +L+ +EK   G K VVFSQW++MLDL E +L++ G++  R DG++ Q+ RE  L  F++D ++ V+++SLKAGGVGLNLTAAS VI+LDPWWNP +EDQAIDR+HRLGQ  DV VK+++V DTVE+ +L LQ+ K  +A + LA+         +L + DL++FF
Sbjct:  712 QSYIKNRILEIQEEGLD-CQECPVCLEVPE-SPVLTPCAHLLCKSCVVTFLESNGQEAGCPVCRADVSPDQLIAI-----------------------EPPEKPTPTT----------------------QDESWAGSSKLNQLVKDLKSIEK---GRKVVVFSQWSHMLDLVESTLSKHGYSCLRFDGTLKQEDRERVLLRFNNDPTIQVLVISLKAGGVGLNLTAASVVIMLDPWWNPGIEDQAIDRVHRLGQTRDVMVKKYIVQDTVEEMILQLQQRKATLASTVLATAKSAADNDGRLSLADLLKFF 972          
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A1D6Q2S9_MAIZE (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 n=8 Tax=Zea mays TaxID=4577 RepID=A0A1D6Q2S9_MAIZE)

HSP 1 Score: 200 bits (508), Expect = 1.390e-56
Identity = 126/323 (39.01%), Postives = 172/323 (53.25%), Query Frame = 2
Query:   26 RGKRGAVG------SRAFVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLRRETC--CPVCRSPMQESEIIDFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGGWVGSTKLERLELELREMEKKRAGAKAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQKLRVEDLVQFF 970
            RG  GAV       SRA+++ VV +L++D      ECPIC E    A  LT CAH LC+ CL    R  T   CPVCR  M + ++I  P  N  +   +K                                               WV S+K+  L  EL  +    +GAK++VFSQWT  LDL +  L+R  ++F RLDG+++ Q+RE  ++ FS D  + V+L+SLKAGGVG+NLTAAS   ++DPWWNPAVE+QA+ RIHR+GQ   VS++RF+V  TVE++M A+Q  K RM   AL      E +  R+E+L   F
Sbjct:  104 RGGNGAVNGDSCIPSRAYIEQVVQELQKDEG----ECPICLEAFEDA-VLTPCAHRLCRECLLSSWRSATAGLCPVCRMSMSKQDLITAPTDNRFQIDVEKN----------------------------------------------WVESSKISALLQELEALRS--SGAKSIVFSQWTAFLDLLQIPLSRNNFSFARLDGTLNLQQREKVIKEFSEDKGILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKTVSIRRFIVKGTVEERMEAVQARKQRMISGALTDQ---EVRTARIEELKMLF 370          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHD4_9PHAE8.800e-11564.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1XFX6_HETAK7.600e-6262.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A425DCE9_9STRA3.600e-6141.23Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A485LGA6_9STRA4.510e-6139.37RanBP-type and C3HC4-type zinc finger-containing p... [more]
W4GNE1_9STRA1.240e-5841.23RanBP-type and C3HC4-type zinc finger-containing p... [more]
A0A2P4X6Z0_9STRA1.610e-5840.38DNA repair protein RAD5, SWI/SNF-related matrix-as... [more]
A0A024UTG2_9STRA3.640e-5839.81RanBP-type and C3HC4-type zinc finger-containing p... [more]
A0A453AHJ8_AEGTS8.110e-5839.75Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A6G0XYJ5_9STRA1.030e-5638.91RanBP-type and C3HC4-type zinc finger-containing p... [more]
A0A1D6Q2S9_MAIZE1.390e-5639.01Putative SWI/SNF-related matrix-associated actin-d... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1286contigF-serratus_M_contig1286:14183..19871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.1
Seed ortholog evalue8.3e-50
Seed eggNOG ortholog157072.XP_008861217.1
KEGG koko:K15505
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons8
Model size1298
Cds size837
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1286.2106.1prot_F-serratus_M_contig1286.2106.1Fucus serratus malepolypeptideF-serratus_M_contig1286 14505..19312 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929225.1985753-UTR-F-serratus_M_contig1286:14182..145041622929225.1985753-UTR-F-serratus_M_contig1286:14182..14504Fucus serratus maleUTRF-serratus_M_contig1286 14183..14504 -
1690962757.7596474-UTR-F-serratus_M_contig1286:14182..145041690962757.7596474-UTR-F-serratus_M_contig1286:14182..14504Fucus serratus maleUTRF-serratus_M_contig1286 14183..14504 -
1622929225.4572837-UTR-F-serratus_M_contig1286:19312..193631622929225.4572837-UTR-F-serratus_M_contig1286:19312..19363Fucus serratus maleUTRF-serratus_M_contig1286 19313..19363 -
1690962757.849471-UTR-F-serratus_M_contig1286:19312..193631690962757.849471-UTR-F-serratus_M_contig1286:19312..19363Fucus serratus maleUTRF-serratus_M_contig1286 19313..19363 -
1622929225.4694912-UTR-F-serratus_M_contig1286:19731..197751622929225.4694912-UTR-F-serratus_M_contig1286:19731..19775Fucus serratus maleUTRF-serratus_M_contig1286 19732..19775 -
1690962757.8645504-UTR-F-serratus_M_contig1286:19731..197751690962757.8645504-UTR-F-serratus_M_contig1286:19731..19775Fucus serratus maleUTRF-serratus_M_contig1286 19732..19775 -
1622929225.4859576-UTR-F-serratus_M_contig1286:19827..198711622929225.4859576-UTR-F-serratus_M_contig1286:19827..19871Fucus serratus maleUTRF-serratus_M_contig1286 19828..19871 -
1690962757.8721805-UTR-F-serratus_M_contig1286:19827..198711690962757.8721805-UTR-F-serratus_M_contig1286:19827..19871Fucus serratus maleUTRF-serratus_M_contig1286 19828..19871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929225.3718896-CDS-F-serratus_M_contig1286:14504..146031622929225.3718896-CDS-F-serratus_M_contig1286:14504..14603Fucus serratus maleCDSF-serratus_M_contig1286 14505..14603 -
1690962757.7694983-CDS-F-serratus_M_contig1286:14504..146031690962757.7694983-CDS-F-serratus_M_contig1286:14504..14603Fucus serratus maleCDSF-serratus_M_contig1286 14505..14603 -
1622929225.3834682-CDS-F-serratus_M_contig1286:15388..155091622929225.3834682-CDS-F-serratus_M_contig1286:15388..15509Fucus serratus maleCDSF-serratus_M_contig1286 15389..15509 -
1690962757.7775154-CDS-F-serratus_M_contig1286:15388..155091690962757.7775154-CDS-F-serratus_M_contig1286:15388..15509Fucus serratus maleCDSF-serratus_M_contig1286 15389..15509 -
1622929225.3947666-CDS-F-serratus_M_contig1286:16194..163041622929225.3947666-CDS-F-serratus_M_contig1286:16194..16304Fucus serratus maleCDSF-serratus_M_contig1286 16195..16304 -
1690962757.7858534-CDS-F-serratus_M_contig1286:16194..163041690962757.7858534-CDS-F-serratus_M_contig1286:16194..16304Fucus serratus maleCDSF-serratus_M_contig1286 16195..16304 -
1622929225.4060485-CDS-F-serratus_M_contig1286:18122..182301622929225.4060485-CDS-F-serratus_M_contig1286:18122..18230Fucus serratus maleCDSF-serratus_M_contig1286 18123..18230 -
1690962757.8017898-CDS-F-serratus_M_contig1286:18122..182301690962757.8017898-CDS-F-serratus_M_contig1286:18122..18230Fucus serratus maleCDSF-serratus_M_contig1286 18123..18230 -
1622929225.421785-CDS-F-serratus_M_contig1286:18512..188241622929225.421785-CDS-F-serratus_M_contig1286:18512..18824Fucus serratus maleCDSF-serratus_M_contig1286 18513..18824 -
1690962757.816972-CDS-F-serratus_M_contig1286:18512..188241690962757.816972-CDS-F-serratus_M_contig1286:18512..18824Fucus serratus maleCDSF-serratus_M_contig1286 18513..18824 -
1622929225.4373941-CDS-F-serratus_M_contig1286:19225..193121622929225.4373941-CDS-F-serratus_M_contig1286:19225..19312Fucus serratus maleCDSF-serratus_M_contig1286 19226..19312 -
1690962757.8315656-CDS-F-serratus_M_contig1286:19225..193121690962757.8315656-CDS-F-serratus_M_contig1286:19225..19312Fucus serratus maleCDSF-serratus_M_contig1286 19226..19312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1286.2106.1

>prot_F-serratus_M_contig1286.2106.1 ID=prot_F-serratus_M_contig1286.2106.1|Name=mRNA_F-serratus_M_contig1286.2106.1|organism=Fucus serratus male|type=polypeptide|length=279bp
MVAPALTTCAHLLCKACLQDCLRRETCCPVCRSPMQESEIIDFPDSNGIK
KGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSK
GGWVGSTKLERLELELREMEKKRAGAKAVVFSQWTNMLDLAERSLTRGGW
TFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVI
LLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKG
RMAKSALASGSLGESQKLRVEDLVQFFK*
back to top

mRNA from alignment at F-serratus_M_contig1286:14183..19871-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1286.2106.1 ID=mRNA_F-serratus_M_contig1286.2106.1|Name=mRNA_F-serratus_M_contig1286.2106.1|organism=Fucus serratus male|type=mRNA|length=5689bp|location=Sequence derived from alignment at F-serratus_M_contig1286:14183..19871- (Fucus serratus male)
CGGCGGGAAACAGTTACGATAGCAGAGGGGGAAAAGAGGAGCAGGCTGGG GCGGAAGATGGAGAGAAGGGGGGAGAGGAGGGCGGGTCGGGAGCAGTCGG GAGTCGGGCGTTCGTCGACAGCGTTGTGGGACAGCTGCGGGTAAGCTCGC ACTCCCGCTGTGCCGCGGGGGAGATCAGAGAATTCCCCCCCCCCCCCCGT CTTTTTCCTCCATTATTTCTTTTCTAGGATTTGTACATGTTTTAAATTCG TTCTGTTACCCTCTTTTTTCCCTTTAAGTCTGAAACTTTTACTGTAGCTC CATCTGGTGAAACGGGCAAGAAGATTGGAGATCCCGAGGGAAACGAACCG CAACTACCGCTCTACCAAAATGCGGGAGCACAGGAAATATTTTGACGACG ACCGATCCTCGCGTGGGAGGATGTCTTGATTGGCGCTCTCCATGTAATGC CACGAGACCTTCCCCCGCCTGCCCCTCGCTCTGTGCGCCGATGCCGGTGG TTCTTCAGGAAGATGGGAATAATCCAAGCACGGAATGCCCCATTTGTTTC GAGCTACCGATGGTGGCGCCCGCGCTGACTACGTGCGCGCACCTTTTGTG CAAGGCTTGCTTGCAGGACTGCCTCAGGAGGGAGACTTGTTGTCCGGTGA GACCCTCCTCATGGGGGAGAGAGGGGGTTGGTTCGGATAAGACGACGTTT TGTTGGTGTGCTTGGGTCTGTGGGGATGGGGTTTGGATCAACGAGAGCTC CGTCCAACCAGTGTTTCATGTACAGACACGCTGCTTTTCCAAACCTCGCT TTGCTCTGCGGCCTGGATTTACTTGATCTCTCTGTTCTTGTAACGTACAG AAATCGAGGTTTTCTGGAACCTAATCAAAGTTCAATGCGCTTCTGCATTC ACCCCCCCCCCCCCTGCTTCCCCCGCCTCCCCCCCTCGCCCCTTCTCCAT TTCGCCCTTTTTTTCGCCCGTCACATTGGCTCACATGTTCTGTCTACTTT CTCAAGTTTTTCGTCTCAAAATTTCTCTGCCCCCACCCTTTCCACAGGTC TGCCGATCCCCCATGCAGGAGAGTGAGATCATCGACTTCCCCGACTCCAA TGGAATCAAAAAGGGCGCACAGAAAACCTCGGGAGAAATGGAAGAAGACG AGCGCGCGGAGGCAAGGTCGACGCCGTTGCCGATGTCGATTTTTGGGGCG ACCGCTTCGTCTGCCACGTCGGGGGGGGGCGTACAGGTCCGCGGCGGTTG TCACTCCAAGGGCGGTTGGGTGGGAAGCACGAAGCTTGAGAGGCTGGAGC TGGAGCTGCGGGAGATGGAAAAGAAGCGGGCGGGAGCAAAGGCCGTCGTG TTCTCCCAGGCGAGTTTGACAGGTTTTGGCGGATGTTTTGCGTCTAGCGG GCAGAGGGCAGAGGGCAGAGGGTTGCAAGCCGTCGTTCGAAATGCTTGGA GGCCTTTGTGCGTGTGTGGGAGAGAGAGAGAGAGAGAGAGAAAGCTTTTT TATTCGTCGACGTCCAAAATGTTTATACTTGTCACGAACCTTGTCTCCCT ACCCCCCTCCCCTACGTGCTACGTCTTGGCCGGCTTGACGCATCCACGCA CGCATCTTGGACCGCCCGCCCCCCTTTATCGCCGCGGCCAGTGGACAAAC ATGCTGGATCTGGCGGAAAGGAGCCTAACCAGGGGAGGGTGGACGTTCCG TCGCCTCGACGGGAGCATGAGCCAACAGAAGCGCGAGTCGGCGCTCGAGG TGAAAATAAAAGACGCGCTGTTTTGAGCTCGGCACAAATGTCCTAGCCAA GGCGCCGTCTTTGGTAGATTGTTTTTTATGTCTGTGGTGAAATATATGTG CAAATAAGGCCTATAAGTGCGTAGTCCACCGCCCTTGAACAAAATCTACT TTCTTGCCGGAGCGCAAGGTCAAGACCCTCGGTTCGACTCCTGAGAAGCT TTGTAAGAGTACGTTTCGTGGCGAGGGAGATAGACTCACCATAATAGGGT CGGCAGCCTTGTGCGCAAAGGATAGGAAGCCAGTTACGTGGGGGGGAATC TTCTAAGCGTTTTTTTGAGCCCCTGCAAGAGAGAACGGCGACCGTACTTA TCATGGCATCGAGCAACGCGTCGTTCATCGTGGATGTTTTTGATTGGTTG TATTCACGCGGTGAAATCGCGTGAACTATTAATGACACCTGAAATGAACT ACCGGTACTAACGAAGCATTGAAGCATTGAAGAAGTTAGTTAAATCCTCC TCAGGCCGAATCTTTCTAAATGGAAACTTTGCAACCAGAGCGCACTTTCT TTCATTCATTCATTCAGTCAGTCAATCAATCAATCATATGACCTTGACAC AGTTGTAGCGCAGACCGGATTCCCGCCCTGAAGAACGAGTCGGTTTTCTC GATTGGTTTCCCGCTCTTGGGAGCGCGGAATAGAAGCAACTACCTGGTAA TTGTCTGCGGCGGCGAACAAAGGTTTTAAAGTTTTGAGATGAGATGGTTG GTTGGTTATAGGCCCTGCTGCACACGCGGAGATAATAGAAACCTCCGGCA GAGTTTTGGTTTTCTGGGTCTGTCCTGCAGGGCCTATTCAACACAGTGTT GCCCTAAGAACCTTACAGCCCCTGGTTTGCCGCGGACAGTTGGTTGATTC TACGAGGATTGATAAGCCGGATACTATAATAGCGTTATCATGGTAGCCCT GGGAGAGAATACCAATTCGGTGCAACGGGCGGAAGTCCGATATGCGTTCC TTTTGAGTCAAAAATATCATATATGGTTAGAGGTGCGCTCCTTGTGCAAA GTTTTCACACTATTAATACATACTGGTATATGTTTGAACGGTCATCACAG ATAGCAAGAATAAGGATCGACCGGGTAAGATTGCCAATACTTCTCGTGGT CAGCTGAATAGGGAGAGTGATTATTTCCTTGTCCTCGTTCGCGCCTGAGA ATTCGGTCTCGCGAGACGGGTACGGTAGTCCCGTCCTGCGTCAGCCTGCT TATCTCCATACTCGGACTGAATCTGGTTCTTACTTACGGGATTCCTCCGC GAGTTCCGCGGCGGCGTCCATGTATTTATCCAAAGCGCCATACGCCATCG GGTCAGTCCCGAGTTTGTCGGGTCACGCATTTGCATACCGACGGCGTTCG CTGCCGAGAGTCCGCCGGCACAGGGCCAGTATATATATAATGGCGCAAAA AGATTTGTAGGAATATTTGTGGAGTATTTTTGCTACTTTTTTCTTTGTCT TTTGTTTTCTGCTGTTGTTTTTTTATCCCGATGGGAGAGAACGCTAACTC GAATGCTATTATTAGATGTCGCAATCCAGGTGCTTTCCCCCTACTGTATA CAGTATATAAGATTAAAGACAGCAAGTATTAATGGCGCTCCGAGAAACTG AAAATGTGTATGATACATGTAGAATCGATATTCATCGTATTGGGGGCGAG CTAAAAAAATGTTCCCGCGCTGCCACCGCTCTCGCCACCCATGATCATCA TGCATCATGCCCTGACTGACATTACACGCTCATCACGCCTTGGCGCGCAA ACGCGTCTAATGCGCAGAGTTTCTCGTCAGACGGAAGCGTGACCGTGATG CTGGTTTCGCTCAAGGCGGGTGGGGTCGGCCTTAACCTCACGGCGGCCTC AACCGTCATACTCCTCGACCCTTGGTGGTGAGAGGACGTTGCTCTTAGAG GACAGTGTAGTATATGTATAGAGAAGAGAAGAGAGCGAGTCGACCCCCTT TTTCGTCTTCCTCTATTTTTTTTTATGTGTGTGTGTACGTGTCTTGTTGG GAAACAACCACCCTCTCTCTTTCTTACGAGGAGTATTACTACTAGGGTAC TATTTAATATTGTACACTTCCTTACGGCGTACGGAAGGCGTAGTATTGTA GTGTACATGTGATGTACGAGTAGGGCTCTTTTAGAGATCTTTGAAGAGGG GAACCGAAATACCTTTTGCTAGTAGGGTTAAAGTTTGTTTTGTTTTTTTC CCCTTTTCCCTTTTCCGTTCCTCCTCACCTACCAGTACGTAATATTATAG CTATGTACTATATACTTGCCTTTGATTAATACTTGACTAAATAATGCGTT ATCCATATGATACGAGTCCTATCCACTCCGCCGTCTCTCTCCCAAGGGTC AACCACAACACTAATAAGTAATAATAATATTATACTGTAATACTATCAAT ATTAAGATTAATACAAGCAGCCCTCATTCCAAAAGATAGGAAAAACGGCT GCCGGAGGGCGTAATAGATGTGCATCCCCCCCCCCCCCCCAAGTTCTTCC CAACTCAATAATTACTATACCCCGTCTCAAATGCTTAATATGATATTTAA TTATCCCCTCAGGAATCCGGCCGTTGAAGATCAAGCGATCGATCGAATCC ATCGACTGGGGCAACTGAATGACGTCAGCGTGAAGCGCTTCGTGGTGGCA GACACGGTGGAAGATAAAATGCTCGCGCTGCAGGTGACAGACAGACAGTT CAATTACGGTGGGCCGTCTCCTCGTCGTGGTCGTGATTTTTTGTACCTAA TGTGGTTGTTCAGTACCTGGTAGATGACTATTAATAGTGTCCCACCCGTT TTATTTTTGTGTTATCTAGTGTTTTTTCCCAACCATATTTCCGCAGAAAG CAGCCAAGACAAGAACACAAAACGGGACAAAAACAAATCCGATACCAGTA TACTTTTTCAAAAGACGTAACCTGTTTCTACGTTGACGATGCTTATTATA TCTCATATGTATGCTGCCGAGAAAATGAGAGCCCAAGTTTTTTTTTCCCC CACACTCTCCGAAATTGTTGTTGTGTGTGTGTGTGTGTAATACGCAGATA ACCTACTTATTACTACATACCCGGTATGCCATATAATAATAGATATCCAA GACGGGGTAGAGCCTGTGTAGGAGCTGAAAACCTTCACATCACTAATCCT ATGATAGAGACGCGGCCATCCCTCCCCCATCTTATGGAATACCGAATGCA CGATGCCATATCGAGTCACGTTCGGTATTTTGGAAGGTAGAAAGGTATTC GGTGGCGGAGAATAGTAGCGGGGAGGAGGACGCAGCGCGTGTGATATGGT AGAAAAGGCTTAAGACTACTTGCGTGTTCTGTCTTTTTAATATTAATAGA TTATAGATTATTAGTCGTGCCTGCGTTGTCCGCATTTGGATTGAACGGTC GATGACGTGTTCTAAATCAACATTCTCTCGCGTTTCTTTGTTTTGTGTTG TCTTTTGACTTACCGCAGGAGGTGAAAGGAAGGATGGCAAAGAGTGCCCT TGCGTCCGGATCGCTCGGCGAGTCTCAGAAGCTGCGGGTTGAGGACCTCG TGCAGTTCTTCAAGTAGTGTGTGATGTTACGCGCCATTAGTGTTCAGCGG TGGGACATCCGTGTTCTTGACGTTTACTATATATAGTTGACGTGGAAACA AAGGCTTTTGGTGAGGGAAACGTGGTCTGATGCCGTGGCCTTTTTGGTCG CGAAGGGCGATCGATCTCATGTCAGATCTTGTGTCTTAGGGCAGACAACG TGTGTGTTCAGTACGAGTGGGATGCTCAGGTATAAGCTTTATATTGGTTT TTGTAAAGGAAAAAACAGACGGCACCAACAGATACCCCCCCGGTAATCCG TCAGAGGCAAGTTATTGTTCAAGTTACTACTAGTACGAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1286:14183..19871-

>mRNA_F-serratus_M_contig1286.2106.1 ID=mRNA_F-serratus_M_contig1286.2106.1|Name=mRNA_F-serratus_M_contig1286.2106.1|organism=Fucus serratus male|type=CDS|length=1674bp|location=Sequence derived from alignment at F-serratus_M_contig1286:14183..19871- (Fucus serratus male)
ATGGTGGCGCCCGCGCTGACTACGTGCGCGCACCTTTTGTGCAAGGCTTG
CTTGCAGGACTGCCTCAGGAGGGAGACTTGTTGTCCGATGGTGGCGCCCG
CGCTGACTACGTGCGCGCACCTTTTGTGCAAGGCTTGCTTGCAGGACTGC
CTCAGGAGGGAGACTTGTTGTCCGGTCTGCCGATCCCCCATGCAGGAGAG
TGAGATCATCGACTTCCCCGACTCCAATGGAATCAAAAAGGGCGCACAGA
AAACCTCGGGAGAAATGGAAGAAGACGAGCGCGCGGAGGCAAGGTCGACG
CCGTTGCCGATGTCGATTTTTGGGGCGACCGCTTCGTCTGCCACGTCGGG
GGGGGGCGTACAGGTCCGCGGCGGTTGTCACTCCAAGGGCGGTTGGGTGG
GAAGCACGAAGCTTGAGAGGCTGGAGCTGGAGCTGCGGGAGATGGAAAAG
AAGCGGGCGGGAGCAAAGGCCGTCGTGTTCTCCCAGGTCTGCCGATCCCC
CATGCAGGAGAGTGAGATCATCGACTTCCCCGACTCCAATGGAATCAAAA
AGGGCGCACAGAAAACCTCGGGAGAAATGGAAGAAGACGAGCGCGCGGAG
GCAAGGTCGACGCCGTTGCCGATGTCGATTTTTGGGGCGACCGCTTCGTC
TGCCACGTCGGGGGGGGGCGTACAGGTCCGCGGCGGTTGTCACTCCAAGG
GCGGTTGGGTGGGAAGCACGAAGCTTGAGAGGCTGGAGCTGGAGCTGCGG
GAGATGGAAAAGAAGCGGGCGGGAGCAAAGGCCGTCGTGTTCTCCCAGTG
GACAAACATGCTGGATCTGGCGGAAAGGAGCCTAACCAGGGGAGGGTGGA
CGTTCCGTCGCCTCGACGGGAGCATGAGCCAACAGAAGCGCGAGTCGGCG
CTCGAGTGGACAAACATGCTGGATCTGGCGGAAAGGAGCCTAACCAGGGG
AGGGTGGACGTTCCGTCGCCTCGACGGGAGCATGAGCCAACAGAAGCGCG
AGTCGGCGCTCGAGAGTTTCTCGTCAGACGGAAGCGTGACCGTGATGCTG
GTTTCGCTCAAGGCGGGTGGGGTCGGCCTTAACCTCACGGCGGCCTCAAC
CGTCATACTCCTCGACCCTTGGTGAGTTTCTCGTCAGACGGAAGCGTGAC
CGTGATGCTGGTTTCGCTCAAGGCGGGTGGGGTCGGCCTTAACCTCACGG
CGGCCTCAACCGTCATACTCCTCGACCCTTGGTGGAATCCGGCCGTTGAA
GATCAAGCGATCGATCGAATCCATCGACTGGGGCAACTGAATGACGTCAG
CGTGAAGCGCTTCGTGGTGGCAGACACGGTGGAAGATAAAATGCTCGCGC
TGCAGGAATCCGGCCGTTGAAGATCAAGCGATCGATCGAATCCATCGACT
GGGGCAACTGAATGACGTCAGCGTGAAGCGCTTCGTGGTGGCAGACACGG
TGGAAGATAAAATGCTCGCGCTGCAGGAGGTGAAAGGAAGGATGGCAAAG
AGTGCCCTTGCGTCCGGATCGCTCGGCGAGTCTCAGAAGCTGCGGGTTGA
GGACCTCGTGCAGTTCTTCAAGTAGGAGGTGAAAGGAAGGATGGCAAAGA
GTGCCCTTGCGTCCGGATCGCTCGGCGAGTCTCAGAAGCTGCGGGTTGAG
GACCTCGTGCAGTTCTTCAAGTAG
back to top