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Homology
BLAST of mRNA_F-serratus_M_contig972.21051.1 vs. uniprot
Match: D7G6M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M4_ECTSI) HSP 1 Score: 112 bits (279), Expect = 8.510e-23 Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 1
Query: 1036 FYAPKSVGTFVFRIYDANDPTDTFATSRAWQVDAQGKDVELSVRSVLNQLRDADGKGSVMGALAQLAHLLRHIK 1257
FYA VG+FVFRIYDA+DP T ATS AWQVDAQG+DVELS+R VLNQLR DGKGSVMGALAQL+HLL H++
Sbjct: 71 FYA--QVGSFVFRIYDASDPVGTLATSHAWQVDAQGRDVELSLRFVLNQLRSTDGKGSVMGALAQLSHLLGHLE 142
BLAST of mRNA_F-serratus_M_contig972.21051.1 vs. uniprot
Match: A0A4D9DCB2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCB2_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 8.440e-18 Identity = 64/191 (33.51%), Postives = 101/191 (52.88%), Query Frame = 1
Query: 697 LPPKRTVRNQVGLVYIIHPNKTGVGVPAVSARGYAPPRVHPSAYLMVRWQLPAEAVDGVGGCRRSGDECQRLMVGIFRLGVLSNTGGIISKKLFER---PPRSCQDPRQPLFGNVPFYAPKSVGTFVFRIYDANDPTDTFATSRAWQVDAQGKDVELSVRSVLNQLRDADGKGSVMGALAQLAHLLRHIKP 1260
L P+R R+Q G ++++ V + P A L+ +W+ PA + + + V +FRLGV SNT IISK + + P S P + G V FYAP+S G FVFR++DA DP T ATS+ + V+ +G+DVE ++R + +QL++ + +++ L+Q A LLR + P
Sbjct: 599 LRPRRVTRDQQGRIWVLDSFSKQASV------------IRPKAGLLAKWEAPAALFETLS----------QPEVALFRLGVASNTTAIISKAVQGKRVTPAASSSSPAL-VHGTVSFYAPRSAGVFVFRLFDAKDPVRTHATSQVFLVEVRGRDVEGNLRLISSQLKE---RKTLVAGLSQYAFLLRGMAP 763
BLAST of mRNA_F-serratus_M_contig972.21051.1 vs. uniprot
Match: W7TXG0_9STRA (PAP/25A-associated n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXG0_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 2.290e-16 Identity = 62/191 (32.46%), Postives = 100/191 (52.36%), Query Frame = 1
Query: 697 LPPKRTVRNQVGLVYIIHPNKTGVGVPAVSARGYAPPRVHPSAYLMVRWQLPAEAVDGVGGCRRSGDECQRLMVGIFRLGVLSNTGGIISKKLFER---PPRSCQDPRQPLFGNVPFYAPKSVGTFVFRIYDANDPTDTFATSRAWQVDAQGKDVELSVRSVLNQLRDADGKGSVMGALAQLAHLLRHIKP 1260
L P+R R+Q G ++++ V + P A L+ +W+ PA + + + V +FRLGV SNT IISK + + P S P + G V FYAP+S G FVFR++DA DP T ATS+ + V+ + ++VE ++R + +QL++ + +++ L+Q A LLR + P
Sbjct: 170 LRPRRVTRDQQGRIWVLDSFSKQASV------------IRPKAGLLAKWEAPAALFETLS----------QPEVALFRLGVPSNTTAIISKAVQGKRVTPAASSSSPAL-VHGTVSFYAPRSAGVFVFRLFDAKDPVRTHATSQVFLVEVRDREVEGNLRLISSQLKE---RKTLVAGLSQFAFLLRGMAP 334
BLAST of mRNA_F-serratus_M_contig972.21051.1 vs. uniprot
Match: A0A7S1BF32_9STRA (Hypothetical protein (Fragment) n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BF32_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 8.330e-11 Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 1
Query: 883 RRSGDECQRLMVGIFRLGVLSNTGGIISKKLFERPPRSCQDPRQPLFGNVPFYAPKSVGTFVFRIYDANDPTDTF-ATSRAWQVDAQGKDVELSVRSVLNQLRDADGKGSVMGALAQLAH 1239
+R D +L +G+FR GV SN+ I+SK++ P + L G V FYAP+S G FVFR+Y +D T +TS++++V A G+D+E +R VL+Q R G+ + LA + H
Sbjct: 642 QRLRDVLDKLSIGLFRRGVSSNSNSIVSKEVTAFPVHTAA--HGALRGEVQFYAPRSPGVFVFRLYYQDDHVKTLGSTSQSFEVKAIGEDLEPGLRFVLSQFRTKKISGAALHQLAVIFH 759
BLAST of mRNA_F-serratus_M_contig972.21051.1 vs. uniprot
Match: A0A835YMU6_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMU6_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 4.000e-9 Identity = 56/167 (33.53%), Postives = 75/167 (44.91%), Query Frame = 1
Query: 703 PKRTVRNQVGLVYI--IHPNKTGVGVPAVSARGYAPPRVHPSAYLMVRWQLPAEAVDGVGGCRRSGDECQRLMVGIFRLGVLSNTGGIISKKLFERPPRSCQDPRQPLFGNVPFYAPKSVGTFVFRIY-DANDPTD---------TFATSRAWQVDAQGKDVELSVR 1167
P+RT QVG++ + P P +S V A L V W LPA+ V G G + +G+FR G SN II+K++ + G VPF+AP+SVG FVFR Y D ++ T A SR W VDA G+D E + R
Sbjct: 1005 PRRTTHMQVGVLLLEGYEPQHAAEAAPEIS--------VPARADLSVFWDLPADLVRGGG-----------VSIGLFREGAPSNRNAIIAKRVTVGKGXXXXXXAR-AHGRVPFFAPRSVGAFVFRAYVDGAGKSEKAAAALSAATLAASRRWCVDAHGRDAEAAAR 1151
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 112.5 |
Seed ortholog evalue | 3.1e-22 |
Seed eggNOG ortholog | 2880.D7G6M4 |
KEGG ko | ko:K13291 |
Hectar predicted targeting category | other localisation |
GOs | GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016073,GO:0016074,GO:0016180,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0031123,GO:0031124,GO:0031126,GO:0031323,GO:0031325,GO:0034470,GO:0034641,GO:0034660,GO:0043144,GO:0043170,GO:0043628,GO:0043629,GO:0043631,GO:0044237,GO:0044238,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050265,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065007,GO:0070569,GO:0070920,GO:0071050,GO:0071076,GO:0071704,GO:0080090,GO:0090065,GO:0090304,GO:0097159,GO:0140098,GO:1900368,GO:1900370,GO:1901360,GO:1901363,GO:1903705 |
EggNOG free text desc. | RNA uridylyltransferase activity |
EggNOG OGs | COG5260@1,KOG2277@2759 |
EC | 2.7.7.52 |
COG Functional cat. | L |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko01000 |
Exons | 5 |
Model size | 1339 |
Cds size | 801 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932754.7878983-UTR-F-serratus_M_contig972:42223..42251 | 1622932754.7878983-UTR-F-serratus_M_contig972:42223..42251 | Fucus serratus male | UTR | F-serratus_M_contig972 42224..42251 - |
1690964457.844316-UTR-F-serratus_M_contig972:42223..42251 | 1690964457.844316-UTR-F-serratus_M_contig972:42223..42251 | Fucus serratus male | UTR | F-serratus_M_contig972 42224..42251 - |
1622932754.9019942-UTR-F-serratus_M_contig972:44178..44490 | 1622932754.9019942-UTR-F-serratus_M_contig972:44178..44490 | Fucus serratus male | UTR | F-serratus_M_contig972 44179..44490 - |
1690964457.9100547-UTR-F-serratus_M_contig972:44178..44490 | 1690964457.9100547-UTR-F-serratus_M_contig972:44178..44490 | Fucus serratus male | UTR | F-serratus_M_contig972 44179..44490 - |
1622932754.9228544-UTR-F-serratus_M_contig972:44829..45027 | 1622932754.9228544-UTR-F-serratus_M_contig972:44829..45027 | Fucus serratus male | UTR | F-serratus_M_contig972 44830..45027 - |
1690964457.9215157-UTR-F-serratus_M_contig972:44829..45027 | 1690964457.9215157-UTR-F-serratus_M_contig972:44829..45027 | Fucus serratus male | UTR | F-serratus_M_contig972 44830..45027 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932754.8104198-CDS-F-serratus_M_contig972:42251..42305 | 1622932754.8104198-CDS-F-serratus_M_contig972:42251..42305 | Fucus serratus male | CDS | F-serratus_M_contig972 42252..42305 - |
1690964457.8603425-CDS-F-serratus_M_contig972:42251..42305 | 1690964457.8603425-CDS-F-serratus_M_contig972:42251..42305 | Fucus serratus male | CDS | F-serratus_M_contig972 42252..42305 - |
1622932754.852274-CDS-F-serratus_M_contig972:42584..42788 | 1622932754.852274-CDS-F-serratus_M_contig972:42584..42788 | Fucus serratus male | CDS | F-serratus_M_contig972 42585..42788 - |
1690964457.8696795-CDS-F-serratus_M_contig972:42584..42788 | 1690964457.8696795-CDS-F-serratus_M_contig972:42584..42788 | Fucus serratus male | CDS | F-serratus_M_contig972 42585..42788 - |
1622932754.8700135-CDS-F-serratus_M_contig972:43350..43677 | 1622932754.8700135-CDS-F-serratus_M_contig972:43350..43677 | Fucus serratus male | CDS | F-serratus_M_contig972 43351..43677 - |
1690964457.8864074-CDS-F-serratus_M_contig972:43350..43677 | 1690964457.8864074-CDS-F-serratus_M_contig972:43350..43677 | Fucus serratus male | CDS | F-serratus_M_contig972 43351..43677 - |
1622932754.8844438-CDS-F-serratus_M_contig972:43962..44178 | 1622932754.8844438-CDS-F-serratus_M_contig972:43962..44178 | Fucus serratus male | CDS | F-serratus_M_contig972 43963..44178 - |
1690964457.8988438-CDS-F-serratus_M_contig972:43962..44178 | 1690964457.8988438-CDS-F-serratus_M_contig972:43962..44178 | Fucus serratus male | CDS | F-serratus_M_contig972 43963..44178 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig972.21051.1 >prot_F-serratus_M_contig972.21051.1 ID=prot_F-serratus_M_contig972.21051.1|Name=mRNA_F-serratus_M_contig972.21051.1|organism=Fucus serratus male|type=polypeptide|length=267bp
MGGVQQQQKRGVTEAASVPETTCNGWEANGSGGSLLPASSASPAPASETQ STEDNEKNRHGRLPPKRTVRNQVGLVYIIHPNKTGVGVPAVSARGYAPPR VHPSAYLMVRWQLPAEAVDGVGGCRRSGDECQRLMVGIFRLGVLSNTGGI ISKKLFERPPRSCQDPRQPLFGNVPFYAPKSVGTFVFRIYDANDPTDTFA TSRAWQVDAQGKDVELSVRSVLNQLRDADGKGSVMGALAQLAHLLRHIKP PRTGTAAPSATPSGTP* back to topmRNA from alignment at F-serratus_M_contig972:42224..45027- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig972.21051.1 ID=mRNA_F-serratus_M_contig972.21051.1|Name=mRNA_F-serratus_M_contig972.21051.1|organism=Fucus serratus male|type=mRNA|length=2804bp|location=Sequence derived from alignment at F-serratus_M_contig972:42224..45027- (Fucus serratus male) CAGAATTTCAAATCGTCTTGGGGTTCACCGCATCGAAATCGCGAATCTTC
TTGGGGTTCGCTGGAGCAGAATCTCGAGTCCTCATGGAATTCGCCGGAGA
AAAACCCGCAGCAGCAGGAGCAAGATTGGCCGCAGCAGGACCAGCACTCG
CACGCGACCCTGGATACCGCTCAGGTGGCGAATCGTTCCAACCTACAGGT
GAGGGGTCGGGTTGATTCGTAGTGTCCGCTGGCGAGCGGTTTTAAGGCGC
GTTTTTTTGTGTCCAGAAATGCGTCACTCGCCTAGTCGTGTTCTGTGCCG
CGAAAGGCGGATGCACGCAAGTGGAATGGGCGCGTTTGTTTCAGCCCAGC
AGCATCAAGTAGGTTGGCGTCCGCGGTAGCGGTGAGGTTATTCAGTTACG
TGGACGCCTGGAGCTCGGCGCCGGAAGACTACTAAGTGCGCTCCCCTAAC
CTGAAACGTGAGCCTTAAACCTCTGCCCTCCATTTTAACCACATGCGTCA
CCGCAATCGCCGCATGGCTGACGCGAAACACGAAAAGGTGGACCTCGACG
CGGTGCCTTCGTCGCATCTCAGCCGGAAACAGCAGCACCATAAACTAGCG
GCGGCGAAGGGATCATCAAGCGTTTCCGGAGGCGGAGGTGGCACACCTGC
CGCCTCGCTGCATGCGCAACAAAGCCGAGAGGTAGCGGAGCACTTGCGCC
AGACCCAGCAGCAGAAACGGCATCAAGGGCAGCGGCGTCGAAAGGAAGAA
AGTGGCCGCAGCGCGCCGACGACGAGCCTGGGCACCACTCGAAGCGATGG
TGGAAGAGGAGGAAAAGATCCGCGCGGAGGCGCCCATGGCAAAGGGGAAA
TGGGCGGCGTGCAGCAGCAACAGAAAAGGGGAGTGACTGAAGCAGCATCT
GTGCCGGAGACCACGTGTAACGGATGGGAGGCAAATGGGTCTGGAGGAAG
CCTGCTGCCAGCATCGAGTGCTTCGCCTGCGCCCGCCTCAGAGACACAGA
GTACTGAGGACAATGAAAAGAACAGACACGGTCGCCTGCCGCCGAAGAGA
ACTGTTAGAAATCAGGTGTGCCCATCATCATTATCCGCGTCATTTTTTAA
CTGGCGAACCTTCAACAGCAACAGAAAAAATTATGACAAACATTAGCTAC
AAAAAATAACCGAACGCCCGCCGCTTGGTGGAAGCGGCGGTCTTTTCGCG
GACAAGTTTATTCCCTTGAACGCAACTCACTCCCCGCGTCAAGAGAGAGC
CTTCGGCTGAAAACGACTCCACGCAGTACGCCAACACCGCCCCCCTCTCA
CACAAAGCCGTGACAACCCACATGTTTACTTTTACCTCTTGGCTCGACAG
GTCGGCCTTGTGTACATCATCCACCCGAACAAAACTGGGGTCGGAGTTCC
CGCGGTCTCTGCCAGGGGGTATGCCCCCCCGAGAGTCCACCCGAGCGCCT
ACCTCATGGTGCGCTGGCAGCTCCCGGCGGAAGCCGTCGATGGGGTTGGA
GGGTGTCGTCGGAGCGGGGACGAATGCCAGCGGCTGATGGTGGGGATCTT
CAGGCTCGGGGTGCTGTCCAACACCGGGGGCATAATTTCTAAGAAGCTGT
TCGAGAGGCCGCCAAGATCTTGCCAGGATCCGCGACAGCCGCTCTTCGGG
AACGTTCCGTTCTACGCCCCCAAGTCTGTGAGCTGGTGTTGATCGACGCT
TCTTGGGAGTCTGTTGAGCTCACCTCCCTGGACGAGCATGGTTGGACTCC
TGGTAGAGGGAAATTTTTGGTTTTCGTTAAGGGAACGGGCGCTGGGGGCA
GGGATGAGATATAGAGCTGATGCTGCTGCACAGCAATAGTGCGGACGAGA
ACCACAGTCCGAGTCCACCGTTGATAGGGGATCGCTGTGCGTATTTATTC
CATTGGCGTGTGTTCTTATTTTTACGCTCGGATCGATAGCAGCATTGACC
GACGTATTAACCCCCTCTCCCCCGCGGCAAAGACGTTTCCTACTTTTTTA
TCGAATATATTTTGTCTATGCAGAGGTTATAGCTGGTTCGTTCGGCCGGC
GGGGGCGATAACGATATGCTATTCGACCAAACATGTAAAAAAAAAAAAGT
GTCACATTCTTTCCCCTTTTCCCTCAGCCTTTCTACCCCCTCCCGCCGTT
CCGAATCGTGCGACGTGTCGCGATCGCGCTCTTGTCATGCATTTCCGTTT
TTGGCGATTATTACGTGTCCTGCCTTTCTTTTTCTGAAGGTGGGGACGTT
CGTGTTCCGAATCTACGACGCGAATGATCCAACGGACACGTTCGCTACGA
GCCGCGCGTGGCAAGTGGACGCGCAGGGGAAGGACGTGGAGCTGAGCGTG
CGGTCCGTTCTAAACCAGTTGCGCGACGCTGACGGCAAGGGTTCCGTCAT
GGGGGCTCTGGCGCAGCTTGCCCACCTGCTCCGGCACATTAAGGCGAGAC
AACGCGACTGCTTTGGTTTCATTCTGTTCGGTTTGGTTTCGTTCGGTTTG
GTTTGGTTTGGTTTGGCATGGTTTTGTTTGGGGTTTGTCACACTCATAAC
AACGATTTTGTCTTGTTCGATTTAAGGACAGTTGAGTGTAACGTCCGGAA
TTTCACGAATATGCTCCGTGCCCTATCCCCCCGCCCCCCCCCATCGACCG
TTTTATTCGCCGATAGCGCTCGTGCCTCCCCCCTTCGTCGCGCCTTAACC
CCTTCCGGTGCTGCACAGACAGCCCCCCCGCACAGGTACAGCCGCTCCAT
CGGCAACGCCCTCTGGGACGCCGTGACGGCGGCGCGTAACCAGCTGGACA
GCGT back to topCoding sequence (CDS) from alignment at F-serratus_M_contig972:42224..45027- >mRNA_F-serratus_M_contig972.21051.1 ID=mRNA_F-serratus_M_contig972.21051.1|Name=mRNA_F-serratus_M_contig972.21051.1|organism=Fucus serratus male|type=CDS|length=1602bp|location=Sequence derived from alignment at F-serratus_M_contig972:42224..45027- (Fucus serratus male) ATGGGCGGCGTGCAGCAGCAACAGAAAAGGGGAGTGACTGAAGCAGCATC TGTGCCGGAGACCACGTGTAACGGATGGGAGGCAAATGGGTCTGGAGGAA GCCTGCTGCCAGCATCGAGTGCTTCGCCTGCGCCCGCCTCAGAGACACAG AGTACTGAGGACAATGAAAAGAACAGACACGGTCGCCTGCCGCCGAAGAG AACTGTTAGAAATCAGATGGGCGGCGTGCAGCAGCAACAGAAAAGGGGAG TGACTGAAGCAGCATCTGTGCCGGAGACCACGTGTAACGGATGGGAGGCA AATGGGTCTGGAGGAAGCCTGCTGCCAGCATCGAGTGCTTCGCCTGCGCC CGCCTCAGAGACACAGAGTACTGAGGACAATGAAAAGAACAGACACGGTC GCCTGCCGCCGAAGAGAACTGTTAGAAATCAGGTCGGCCTTGTGTACATC ATCCACCCGAACAAAACTGGGGTCGGAGTTCCCGCGGTCTCTGCCAGGGG GTATGCCCCCCCGAGAGTCCACCCGAGCGCCTACCTCATGGTGCGCTGGC AGCTCCCGGCGGAAGCCGTCGATGGGGTTGGAGGGTGTCGTCGGAGCGGG GACGAATGCCAGCGGCTGATGGTGGGGATCTTCAGGCTCGGGGTGCTGTC CAACACCGGGGGCATAATTTCTAAGAAGCTGTTCGAGAGGCCGCCAAGAT CTTGCCAGGATCCGCGACAGCCGCTCTTCGGGAACGTTCCGTTCTACGCC CCCAAGTCTGTCGGCCTTGTGTACATCATCCACCCGAACAAAACTGGGGT CGGAGTTCCCGCGGTCTCTGCCAGGGGGTATGCCCCCCCGAGAGTCCACC CGAGCGCCTACCTCATGGTGCGCTGGCAGCTCCCGGCGGAAGCCGTCGAT GGGGTTGGAGGGTGTCGTCGGAGCGGGGACGAATGCCAGCGGCTGATGGT GGGGATCTTCAGGCTCGGGGTGCTGTCCAACACCGGGGGCATAATTTCTA AGAAGCTGTTCGAGAGGCCGCCAAGATCTTGCCAGGATCCGCGACAGCCG CTCTTCGGGAACGTTCCGTTCTACGCCCCCAAGTCTGTGGGGACGTTCGT GTTCCGAATCTACGACGCGAATGATCCAACGGACACGTTCGCTACGAGCC GCGCGTGGCAAGTGGACGCGCAGGGGAAGGACGTGGAGCTGAGCGTGCGG TCCGTTCTAAACCAGTTGCGCGACGCTGACGGCAAGGGTTCCGTCATGGG GGCTCTGGCGCAGCTTGCCCACCTGCTCCGGCACATTAAGGTGGGGACGT TCGTGTTCCGAATCTACGACGCGAATGATCCAACGGACACGTTCGCTACG AGCCGCGCGTGGCAAGTGGACGCGCAGGGGAAGGACGTGGAGCTGAGCGT GCGGTCCGTTCTAAACCAGTTGCGCGACGCTGACGGCAAGGGTTCCGTCA TGGGGGCTCTGGCGCAGCTTGCCCACCTGCTCCGGCACATTAAGCCCCCC CGCACAGGTACAGCCGCTCCATCGGCAACGCCCTCTGGGACGCCGTGACC CCCCCGCACAGGTACAGCCGCTCCATCGGCAACGCCCTCTGGGACGCCGT GA back to top
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