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Homology
BLAST of mRNA_F-serratus_M_contig972.21058.1 vs. uniprot
Match: D8LM00_ECTSI (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM00_ECTSI) HSP 1 Score: 61.2 bits (147), Expect = 4.470e-6 Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 2
Query: 149 KESEEAKQVAVETLLGLKNSQGSKSGEPLDEASAQAMAA 265
KE+E+AKQ+AVETLLGLKNSQGSK G P+DEASAQA+ A
Sbjct: 744 KENEDAKQLAVETLLGLKNSQGSKGGGPMDEASAQAVVA 782
BLAST of mRNA_F-serratus_M_contig972.21058.1 vs. uniprot
Match: A0A6H5JM19_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM19_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 4.950e-6 Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 2
Query: 149 KESEEAKQVAVETLLGLKNSQGSKSGEPLDEASAQAMAA 265
KE+E+AKQ+AVETLLGLKNSQGSK G P+DEASAQA+ A
Sbjct: 758 KENEDAKQLAVETLLGLKNSQGSKGGGPMDEASAQAVVA 796
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 2 |
Model size | 1760 |
Cds size | 882 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932754.0776-UTR-F-serratus_M_contig972:279873..279961 | 1622932754.0776-UTR-F-serratus_M_contig972:279873..279961 | Fucus serratus male | UTR | F-serratus_M_contig972 279874..279961 + |
1690964457.4774368-UTR-F-serratus_M_contig972:279873..279961 | 1690964457.4774368-UTR-F-serratus_M_contig972:279873..279961 | Fucus serratus male | UTR | F-serratus_M_contig972 279874..279961 + |
1622932754.1287851-UTR-F-serratus_M_contig972:281536..282326 | 1622932754.1287851-UTR-F-serratus_M_contig972:281536..282326 | Fucus serratus male | UTR | F-serratus_M_contig972 281537..282326 + |
1690964457.5123715-UTR-F-serratus_M_contig972:281536..282326 | 1690964457.5123715-UTR-F-serratus_M_contig972:281536..282326 | Fucus serratus male | UTR | F-serratus_M_contig972 281537..282326 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932754.0968802-CDS-F-serratus_M_contig972:279961..280045 | 1622932754.0968802-CDS-F-serratus_M_contig972:279961..280045 | Fucus serratus male | CDS | F-serratus_M_contig972 279962..280045 + |
1690964457.4930265-CDS-F-serratus_M_contig972:279961..280045 | 1690964457.4930265-CDS-F-serratus_M_contig972:279961..280045 | Fucus serratus male | CDS | F-serratus_M_contig972 279962..280045 + |
1622932754.1144571-CDS-F-serratus_M_contig972:280738..281536 | 1622932754.1144571-CDS-F-serratus_M_contig972:280738..281536 | Fucus serratus male | CDS | F-serratus_M_contig972 280739..281536 + |
1690964457.502659-CDS-F-serratus_M_contig972:280738..281536 | 1690964457.502659-CDS-F-serratus_M_contig972:280738..281536 | Fucus serratus male | CDS | F-serratus_M_contig972 280739..281536 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig972.21058.1 >prot_F-serratus_M_contig972.21058.1 ID=prot_F-serratus_M_contig972.21058.1|Name=mRNA_F-serratus_M_contig972.21058.1|organism=Fucus serratus male|type=polypeptide|length=294bp
MAAAARGVAVDSSSRNSTKPKESEEAKQVAVETLLGLKNSQGSKSGEPLD EASAQAMAAVTTAAVSAAAAAAQEAAAHASAAGADDDSAASAAAAAAATA KAVAQAVAVASNLATERERAPTLGRHSDAPVVGEGKETASAVTATTDDSQ KPATGGGGDNKLAGVDDGKEPATTGDGGKLTAANHSDKPAAAEKNGSRKA DGVAPNGDGNAKGEKAPVEAKEVSPSPAGVRAPAHGGPEEAASREAFAGR SEQSTQDATAGSKRRAAEPPCSEDDAVPADAISKRRQTLASPV* back to topmRNA from alignment at F-serratus_M_contig972:279874..282326+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig972.21058.1 ID=mRNA_F-serratus_M_contig972.21058.1|Name=mRNA_F-serratus_M_contig972.21058.1|organism=Fucus serratus male|type=mRNA|length=2453bp|location=Sequence derived from alignment at F-serratus_M_contig972:279874..282326+ (Fucus serratus male) TGCAGCAAAACCGTCCCCCTCCGCTCCCCTTTCGGGCCTGAGCGGGAAAA
CGCCTCCGTTTGCGGTGACGGCCGCTGCCGCCGCCGCGATGGCCGCCGCC
GCGCGCGGTGTCGCAGTTGATTCCAGTTCCCGTAACAGTACCAAGCCCAA
GGAAAGCGAGGAAGCGAAGCAGGTGGACTATTCGTAGATTTAATCAGACT
TCACACTACTACCACCCAGGCTTGTGTTTGAGAAATCTCTTCACATCTTG
GCCAAAACGAAAATGTATCTTTACAGTGCGTGGTGCTCGGCGTCGTTATC
GTTATCGTTAGGCTTGGGGAGGGAAGAGGGACGTACAGGAGACCACTGGG
GAAGGAGGGTTACTATATACCAGTGTGCTAATTTTTTTTTTGATATTCCG
AAGTATACACAAAGCATGTTTTTAGTAAACAGTAAAACGTGGCCTCGTGA
ACGGTACTGGTACGCTTGTTACCGATCATCATGTGATGGGTTGAATCGCT
CAAGGTTGGCGAATATTGTTTCGCCGCGATGGACGGCGCAACACCTTTTC
CTTACGGCCGATACTTTGGGCACGAGACTCTTGACTTGAACGTGTGTACA
GCACCTTCAGCGTTGTTGCTGACCTTCTCTTACCAATCCGGCTTTTACGC
CACTCTGAAAATTACCCCCGTTATCCTTGCAGGATAAATTTATCTGCAAA
GCTGTCAGCACCTCTCGATTCCTTCGCTGATTCCTTGCCTCTTAATCTGG
CATTTTCCCCCTCACCTCAAACTTTTGTTTTGCCTCTCGCCCCCTTCCAT
CCCTTTCTTCCACTTCGTGCCATGCCACGGCACCTCTTGTCTACACATCA
CCGCCTATGCTATAGGTGGCGGTAGAGACCCTCCTCGGTCTGAAGAACTC
TCAAGGGTCGAAGAGCGGCGAACCATTGGACGAGGCGTCGGCGCAAGCCA
TGGCGGCAGTGACGACGGCGGCGGTCTCCGCTGCTGCAGCAGCCGCCCAG
GAGGCCGCCGCTCACGCCTCGGCCGCCGGTGCGGATGACGACAGCGCGGC
TTCGGCGGCTGCTGCAGCAGCGGCGACGGCCAAGGCGGTGGCGCAGGCGG
TGGCGGTGGCAAGCAACCTTGCGACGGAGAGAGAGCGGGCCCCCACCTTG
GGGAGGCATTCCGACGCGCCCGTGGTCGGCGAAGGAAAGGAAACCGCTTC
GGCGGTGACAGCGACGACCGATGATAGTCAGAAGCCAGCAACTGGTGGTG
GTGGTGATAACAAACTGGCAGGGGTGGATGACGGTAAGGAGCCGGCAACG
ACGGGTGATGGTGGTAAGCTGACAGCGGCCAATCATAGTGACAAACCGGC
AGCGGCCGAGAAAAATGGGAGCAGGAAGGCGGACGGTGTAGCGCCAAATG
GCGATGGCAATGCTAAGGGGGAAAAAGCGCCAGTGGAGGCGAAAGAGGTT
TCACCGTCGCCGGCAGGAGTGCGGGCGCCGGCGCACGGGGGGCCGGAAGA
AGCGGCTTCGCGCGAGGCGTTTGCGGGGAGATCAGAGCAATCGACTCAGG
ATGCGACGGCGGGAAGCAAGCGTCGAGCAGCAGAGCCGCCGTGTTCAGAA
GACGATGCAGTTCCCGCCGACGCGATATCCAAGCGGAGGCAAACTTTGGC
TTCTCCTGTTTGAGTTACTAAAAACGTCAAAACCTACTGTCGTACTTTAA
CAGCGTACTTTAATAACGGTAACCAGCGTGTGACACAGATGTTTCAATAC
GATTTTGCGTTAGGCTCGCGTACTTGTCTCTCCCTTGAGCCAGCTACTTC
CTTGCCATTTTGTTGAGGTCGCGAGGTTTTCAAGGTGAGCCATATGGTCT
CGCTTTCGCCGAGCATTGGATTGCCACGAGCATTGTTTGCGTATACGGTC
CAAGGTAAAGAGGCGTTCCGGCAAGCCGAGAACCGCGGGGGGTAGTTTGC
GGTGCGGGTAGGCGACAGGGGACGGGGGAAGGCGTCGTGTGGACGATGAA
ACGTGAAGCGATTCCCAAGTGCGTCAAAAAAAAGCTCGGGTACATTGTTG
GAGACTTGGATGCGTAGTGGGTCGTATCAGTCAGCGTGTACCATATAAAA
AGGAAGGATTGGTTGTTGAGAGAGATTTTCCGAGTGGGGGGCTGGTCAAC
GGATTTTTTTCACCCAGCGTTTTTTTTGCGTTGGTTTTTGTTTGGAACTC
TTTTGCGTTGTTGTTTTTTCGATCAAGCGATAAAAGCGGAGGACCGTCTC
CCTTTCCGGCGCGCGATCATGTGTCCGTGGCGACATGTAAGTTGATTTCT
TCGGTATCCGCAATATAATCTTGTGCGTGTGTGTATACACTTGTAGGTGG
GCCTGAGTGGTAATGGCGTTTTCGATCACGAGACGCACAAGGACAAGGAC
TTTTGGTGATCGTGAAAAAGGGGAGAGGAGAAAGGAGTTACCAATCAATG
TAA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig972:279874..282326+ >mRNA_F-serratus_M_contig972.21058.1 ID=mRNA_F-serratus_M_contig972.21058.1|Name=mRNA_F-serratus_M_contig972.21058.1|organism=Fucus serratus male|type=CDS|length=1764bp|location=Sequence derived from alignment at F-serratus_M_contig972:279874..282326+ (Fucus serratus male) ATGGCCGCCGCCGCGCGCGGTGTCGCAGTTGATTCCAGTTCCCGTAACAG TACCAAGCCCAAGGAAAGCGAGGAAGCGAAGCAGATGGCCGCCGCCGCGC GCGGTGTCGCAGTTGATTCCAGTTCCCGTAACAGTACCAAGCCCAAGGAA AGCGAGGAAGCGAAGCAGGTGGCGGTAGAGACCCTCCTCGGTCTGAAGAA CTCTCAAGGGTCGAAGAGCGGCGAACCATTGGACGAGGCGTCGGCGCAAG CCATGGCGGCAGTGACGACGGCGGCGGTCTCCGCTGCTGCAGCAGCCGCC CAGGAGGCCGCCGCTCACGCCTCGGCCGCCGGTGCGGATGACGACAGCGC GGCTTCGGCGGCTGCTGCAGCAGCGGCGACGGCCAAGGCGGTGGCGCAGG CGGTGGCGGTGGCAAGCAACCTTGCGACGGAGAGAGAGCGGGCCCCCACC TTGGGGAGGCATTCCGACGCGCCCGTGGTCGGCGAAGGAAAGGAAACCGC TTCGGCGGTGACAGCGACGACCGATGATAGTCAGAAGCCAGCAACTGGTG GTGGTGGTGATAACAAACTGGCAGGGGTGGATGACGGTAAGGAGCCGGCA ACGACGGGTGATGGTGGTAAGCTGACAGCGGCCAATCATAGTGACAAACC GGCAGCGGCCGAGAAAAATGGGAGCAGGAAGGCGGACGGTGTAGCGCCAA ATGGCGATGGCAATGCTAAGGGGGAAAAAGCGCCAGTGGAGGCGAAAGAG GTTTCACCGTCGCCGGCAGGAGTGCGGGCGCCGGCGCACGGGGGGCCGGA AGAAGCGGCTTCGCGCGAGGCGTTTGCGGGGAGATCAGAGCAATCGACTC AGGATGCGACGGCGGGAAGCAAGCGTCGAGCAGCAGAGCCGCCGTGTTCA GAAGACGATGCAGTTCCCGCCGACGCGATATCCAAGCGGAGGCAAACTTT GGCTTCTCCTGTTTGAGTGGCGGTAGAGACCCTCCTCGGTCTGAAGAACT CTCAAGGGTCGAAGAGCGGCGAACCATTGGACGAGGCGTCGGCGCAAGCC ATGGCGGCAGTGACGACGGCGGCGGTCTCCGCTGCTGCAGCAGCCGCCCA GGAGGCCGCCGCTCACGCCTCGGCCGCCGGTGCGGATGACGACAGCGCGG CTTCGGCGGCTGCTGCAGCAGCGGCGACGGCCAAGGCGGTGGCGCAGGCG GTGGCGGTGGCAAGCAACCTTGCGACGGAGAGAGAGCGGGCCCCCACCTT GGGGAGGCATTCCGACGCGCCCGTGGTCGGCGAAGGAAAGGAAACCGCTT CGGCGGTGACAGCGACGACCGATGATAGTCAGAAGCCAGCAACTGGTGGT GGTGGTGATAACAAACTGGCAGGGGTGGATGACGGTAAGGAGCCGGCAAC GACGGGTGATGGTGGTAAGCTGACAGCGGCCAATCATAGTGACAAACCGG CAGCGGCCGAGAAAAATGGGAGCAGGAAGGCGGACGGTGTAGCGCCAAAT GGCGATGGCAATGCTAAGGGGGAAAAAGCGCCAGTGGAGGCGAAAGAGGT TTCACCGTCGCCGGCAGGAGTGCGGGCGCCGGCGCACGGGGGGCCGGAAG AAGCGGCTTCGCGCGAGGCGTTTGCGGGGAGATCAGAGCAATCGACTCAG GATGCGACGGCGGGAAGCAAGCGTCGAGCAGCAGAGCCGCCGTGTTCAGA AGACGATGCAGTTCCCGCCGACGCGATATCCAAGCGGAGGCAAACTTTGG CTTCTCCTGTTTGA back to top
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