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Homology
BLAST of mRNA_F-serratus_M_contig972.21057.1 vs. uniprot
Match: D8LM00_ECTSI (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM00_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 3.130e-18 Identity = 56/79 (70.89%), Postives = 61/79 (77.22%), Query Frame = 1
Query: 271 SKGAGRTGGLSVGGKK---RGSFTRPIADLVLPIGAAQLSLEARAGAYRKAQEAAAAGMAAARAFVEGEFPTDENGEFV 498
S GA + GG K + RPIADLVLP GAAQLSLEARAGAYR+AQEAAAAGMAAARAFVEGE+PTD NGEF+
Sbjct: 366 SPGAAKRASPKSGGVKPRHKAGGVRPIADLVLPSGAAQLSLEARAGAYRRAQEAAAAGMAAARAFVEGEYPTDGNGEFL 444
BLAST of mRNA_F-serratus_M_contig972.21057.1 vs. uniprot
Match: A0A6H5JM19_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM19_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 5.100e-17 Identity = 58/84 (69.05%), Postives = 63/84 (75.00%), Query Frame = 1
Query: 334 RPIADLVLPIGAAQLSLEARAGAYRKAQEAAAAGMAAARAFVEGEFPTDENGEFVVNPRTSPPSTAQFPMSSTAGAGPSSQKQG 585
RPIADLVLP GAAQLSLEARAGAYR+AQEAAAAGMAAARAFVEGE+PTD +GEF+ T+ P T Q P QKQG
Sbjct: 395 RPIADLVLPSGAAQLSLEARAGAYRRAQEAAAAGMAAARAFVEGEYPTDGSGEFLSAKSTALP-TGQ----------PGGQKQG 467
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 2 |
Model size | 906 |
Cds size | 903 |
Stop | 0 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932754.0151594-CDS-F-serratus_M_contig972:278173..278682 | 1622932754.0151594-CDS-F-serratus_M_contig972:278173..278682 | Fucus serratus male | CDS | F-serratus_M_contig972 278174..278682 + |
1690964457.4523203-CDS-F-serratus_M_contig972:278173..278682 | 1690964457.4523203-CDS-F-serratus_M_contig972:278173..278682 | Fucus serratus male | CDS | F-serratus_M_contig972 278174..278682 + |
1622932754.0322802-CDS-F-serratus_M_contig972:279102..279496 | 1622932754.0322802-CDS-F-serratus_M_contig972:279102..279496 | Fucus serratus male | CDS | F-serratus_M_contig972 279103..279496 + |
1690964457.4676836-CDS-F-serratus_M_contig972:279102..279496 | 1690964457.4676836-CDS-F-serratus_M_contig972:279102..279496 | Fucus serratus male | CDS | F-serratus_M_contig972 279103..279496 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig972.21057.1 >prot_F-serratus_M_contig972.21057.1 ID=prot_F-serratus_M_contig972.21057.1|Name=mRNA_F-serratus_M_contig972.21057.1|organism=Fucus serratus male|type=polypeptide|length=301bp
ATGKEVNFRGVESGGKGGANTTSSSAANGINRLLAVGGRDQPRLPGISIP PEGSDNINMGAFGGHGIAAASSGNAGSSASSPRSVGSRARSKGAGRTGGL SVGGKKRGSFTRPIADLVLPIGAAQLSLEARAGAYRKAQEAAAAGMAAAR AFVEGEFPTDENGEFVVNPRTSPPSTAQFPMSSTAGAGPSSQKQGILGRI ISSGTSSMPAKSSTSSAATAMMSDAPSAHKFPSSAVSVPPDPFAASSRTN SSVGGVPPAAVAAAAAAAAAAASAAAAQQAAAGASQASQQQQQQQIGQKQ Q back to topmRNA from alignment at F-serratus_M_contig972:278174..279498+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig972.21057.1 ID=mRNA_F-serratus_M_contig972.21057.1|Name=mRNA_F-serratus_M_contig972.21057.1|organism=Fucus serratus male|type=mRNA|length=1325bp|location=Sequence derived from alignment at F-serratus_M_contig972:278174..279498+ (Fucus serratus male) GCAACGGGCAAAGAAGTCAACTTTAGAGGGGTAGAGAGCGGAGGAAAGGG
AGGCGCGAATACTACGAGCTCCTCTGCTGCAAACGGCATCAATCGCCTGT
TGGCGGTGGGTGGGCGCGACCAACCAAGACTCCCCGGGATATCAATCCCG
CCGGAGGGCAGCGACAACATCAACATGGGCGCTTTCGGCGGTCACGGCAT
AGCGGCTGCCTCTTCCGGTAATGCAGGGTCCAGCGCCTCGTCACCGCGCT
CGGTTGGTTCTCGTGCGAGATCAAAAGGTGCAGGTCGGACCGGAGGACTC
TCGGTCGGCGGCAAAAAGAGGGGTTCCTTTACACGCCCCATTGCGGACCT
GGTACTGCCGATTGGTGCTGCGCAGCTTTCGCTGGAGGCTAGAGCGGGGG
CGTACAGGAAGGCGCAAGAGGCCGCCGCAGCCGGCATGGCGGCGGCCCGA
GCCTTCGTGGAGGGAGAGTTCCCCACCGACGAGAATGGCGAGTTCGTCGT
CAATCCCAGGTGTGTGATCCGGCCTAAACTGGTTGCCGCCAGAGTTGTTG
CAAACGTAACGTCACAAACCGAGACCGCTACTGAAGCTCCGAGGGTTACA
AAGCTTCCATGGTGGCACGAAGCATACGCAAAAAGCGGTTTTCGTTTGTT
TACTGATTTTCCTGCGGGGGACTATAGACGCCCTCTGCTACCGTATACGC
AATCTGCGTATGCCCGCATCCCTCGTGCTGTTGCACGCGACGGCGAGAAG
CAGCGAGTTCGCAGTTGAGTGAACAGCCTCACCCTCCCCGCCCCCGCTGC
CATTTCGGACGAAGTTGTTTGAAAGGCAGAAGAAGCGCTTACCCCGCTTT
CAGCCGCGAGGAAAACTTACACAAACAAGTATCCCGTTGATCAAATGCCT
CTTGTCGTTCCTCTCGCACCCCTCAACAGGACCAGCCCGCCATCGACCGC
CCAATTTCCTATGTCATCCACGGCGGGAGCGGGCCCTTCTTCTCAAAAGC
AAGGCATACTCGGCCGTATCATCTCGTCTGGCACATCTTCAATGCCGGCA
AAATCATCGACCTCGTCCGCCGCCACGGCGATGATGTCAGACGCCCCCAG
TGCGCACAAATTTCCTTCTTCAGCGGTGTCGGTTCCACCCGACCCTTTTG
CAGCGTCCTCCAGGACCAACAGTTCGGTCGGCGGGGTTCCACCCGCCGCG
GTTGCTGCCGCAGCCGCAGCCGCCGCCGCGGCTGCCTCGGCGGCGGCGGC
TCAACAGGCTGCCGCAGGGGCATCGCAGGCTTCCCAGCAGCAGCAGCAGC
AGCAAATAGGTCAAAAGCAACAGCA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig972:278174..279498+ >mRNA_F-serratus_M_contig972.21057.1 ID=mRNA_F-serratus_M_contig972.21057.1|Name=mRNA_F-serratus_M_contig972.21057.1|organism=Fucus serratus male|type=CDS|length=1806bp|location=Sequence derived from alignment at F-serratus_M_contig972:278174..279498+ (Fucus serratus male) GCAACGGGCAAAGAAGTCAACTTTAGAGGGGTAGAGAGCGGAGGAAAGGG AGGCGCGAATACTACGAGCTCCTCTGCTGCAAACGGCATCAATCGCCTGT TGGCGGTGGGTGGGCGCGACCAACCAAGACTCCCCGGGATATCAATCCCG CCGGAGGGCAGCGACAACATCAACATGGGCGCTTTCGGCGGTCACGGCAT AGCGGCTGCCTCTTCCGGTAATGCAGGGTCCAGCGCCTCGTCACCGCGCT CGGTTGGTTCTCGTGCGAGATCAAAAGGTGCAGGTCGGACCGGAGGACTC TCGGTCGGCGGCAAAAAGAGGGGTTCCTTTACACGCCCCATTGCGGACCT GGTACTGCCGATTGGTGCTGCGCAGCTTTCGCTGGAGGCTAGAGCGGGGG CGTACAGGAAGGCGCAAGAGGCCGCCGCAGCCGGCATGGCGGCGGCCCGA GCCTTCGTGGAGGGAGAGTTCCCCACCGACGAGAATGGCGAGTTCGTCGT CAATCCCAGGCAACGGGCAAAGAAGTCAACTTTAGAGGGGTAGAGAGCGG AGGAAAGGGAGGCGCGAATACTACGAGCTCCTCTGCTGCAAACGGCATCA ATCGCCTGTTGGCGGTGGGTGGGCGCGACCAACCAAGACTCCCCGGGATA TCAATCCCGCCGGAGGGCAGCGACAACATCAACATGGGCGCTTTCGGCGG TCACGGCATAGCGGCTGCCTCTTCCGGTAATGCAGGGTCCAGCGCCTCGT CACCGCGCTCGGTTGGTTCTCGTGCGAGATCAAAAGGTGCAGGTCGGACC GGAGGACTCTCGGTCGGCGGCAAAAAGAGGGGTTCCTTTACACGCCCCAT TGCGGACCTGGTACTGCCGATTGGTGCTGCGCAGCTTTCGCTGGAGGCTA GAGCGGGGGCGTACAGGAAGGCGCAAGAGGCCGCCGCAGCCGGCATGGCG GCGGCCCGAGCCTTCGTGGAGGGAGAGTTCCCCACCGACGAGAATGGCGA GTTCGTCGTCAATCCCAGGACCAGCCCGCCATCGACCGCCCAATTTCCTA TGTCATCCACGGCGGGAGCGGGCCCTTCTTCTCAAAAGCAAGGCATACTC GGCCGTATCATCTCGTCTGGCACATCTTCAATGCCGGCAAAATCATCGAC CTCGTCCGCCGCCACGGCGATGATGTCAGACGCCCCCAGTGCGCACAAAT TTCCTTCTTCAGCGGTGTCGGTTCCACCCGACCCTTTTGCAGCGTCCTCC AGGACCAACAGTTCGGTCGGCGGGGTTCCACCCGCCGCGGTTGCTGCCGC AGCCGCAGCCGCCGCCGCGGCTGCCTCGGCGGCGGCGGCTCAACAGGCTG CCGCAGGGGCATCGCAGGCTTCCCAGCAGCAGCAGCAGCAGCAAATAGGT CAAAAGCAACAGGACCAGCCCGCCATCGACCGCCCAATTTCCTATGTCAT CCACGGCGGGAGCGGGCCCTTCTTCTCAAAAGCAAGGCATACTCGGCCGT ATCATCTCGTCTGGCACATCTTCAATGCCGGCAAAATCATCGACCTCGTC CGCCGCCACGGCGATGATGTCAGACGCCCCCAGTGCGCACAAATTTCCTT CTTCAGCGGTGTCGGTTCCACCCGACCCTTTTGCAGCGTCCTCCAGGACC AACAGTTCGGTCGGCGGGGTTCCACCCGCCGCGGTTGCTGCCGCAGCCGC AGCCGCCGCCGCGGCTGCCTCGGCGGCGGCGGCTCAACAGGCTGCCGCAG GGGCATCGCAGGCTTCCCAGCAGCAGCAGCAGCAGCAAATAGGTCAAAAG CAACAG back to top
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