mRNA_F-serratus_M_contig1284.2101.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1284.2101.1
Unique NamemRNA_F-serratus_M_contig1284.2101.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1284.2101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1284contigF-serratus_M_contig1284:266517..267105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size166
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929224.5744286-CDS-F-serratus_M_contig1284:266516..2665971622929224.5744286-CDS-F-serratus_M_contig1284:266516..266597Fucus serratus maleCDSF-serratus_M_contig1284 266517..266597 +
1690962757.3982587-CDS-F-serratus_M_contig1284:266516..2665971690962757.3982587-CDS-F-serratus_M_contig1284:266516..266597Fucus serratus maleCDSF-serratus_M_contig1284 266517..266597 +
1622929224.5842683-CDS-F-serratus_M_contig1284:267022..2671031622929224.5842683-CDS-F-serratus_M_contig1284:267022..267103Fucus serratus maleCDSF-serratus_M_contig1284 267023..267103 +
1690962757.4078407-CDS-F-serratus_M_contig1284:267022..2671031690962757.4078407-CDS-F-serratus_M_contig1284:267022..267103Fucus serratus maleCDSF-serratus_M_contig1284 267023..267103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1284.2101.1prot_F-serratus_M_contig1284.2101.1Fucus serratus malepolypeptideF-serratus_M_contig1284 266517..267103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1284.2101.1

>prot_F-serratus_M_contig1284.2101.1 ID=prot_F-serratus_M_contig1284.2101.1|Name=mRNA_F-serratus_M_contig1284.2101.1|organism=Fucus serratus male|type=polypeptide|length=54bp
YTASHKWLYGTIMLFVFRPLLVDIKNMEKYFTHAKVSEVRARLDTTRDGT
RRAL
back to top

mRNA from alignment at F-serratus_M_contig1284:266517..267105+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1284.2101.1 ID=mRNA_F-serratus_M_contig1284.2101.1|Name=mRNA_F-serratus_M_contig1284.2101.1|organism=Fucus serratus male|type=mRNA|length=589bp|location=Sequence derived from alignment at F-serratus_M_contig1284:266517..267105+ (Fucus serratus male)
TACACCGCCTCGCACAAGTGGCTGTACGGCACGATAATGTTGTTCGTTTT
TAGGCCACTGCTGGTGGACATCAAAAACATGGTGAGTAAAAAATAAGTCA
GATTATTTTCTCTATCACCGGCGGTTTTTAATAGTTCTCATAGCAAGACG
TTCACGCTACACTTTACCAGTATATTGCCGCTACATAACCCCTTCGCCGA
TTTATATCTCTTGTTCAATTGAGAATGTATCATATATTGGCTGGCGTTGG
ACACTGGGATGCAGCCTACGATATATTTACTCATACGTTCGACCATTTTC
ACATTTCGTGGAACTAAATATGTCAAGTGAGTCTTAAACTGATTCAAAAA
CGGCCCAAAGGCATAACGACTTGTAGCATTGGGTCCTGATTAAGACGAAT
TTTCGACTACAACTACGAACGTATTTGTTATATAGCCGCCCCCCCCCCAA
GAAATAAATGAATTCGCAGTCCTTTTGCTCTGCGCTTGAAATACTGCACA
ATGCAGGAGAAGTACTTCACCCATGCCAAAGTCAGCGAGGTTCGTGCTAG
ATTGGACACAACCAGAGACGGTACCAGGCGGGCGCTCTT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1284:266517..267105+

>mRNA_F-serratus_M_contig1284.2101.1 ID=mRNA_F-serratus_M_contig1284.2101.1|Name=mRNA_F-serratus_M_contig1284.2101.1|organism=Fucus serratus male|type=CDS|length=324bp|location=Sequence derived from alignment at F-serratus_M_contig1284:266517..267105+ (Fucus serratus male)
TACACCGCCTCGCACAAGTGGCTGTACGGCACGATAATGTTGTTCGTTTT
TAGGCCACTGCTGGTGGACATCAAAAACATGTACACCGCCTCGCACAAGT
GGCTGTACGGCACGATAATGTTGTTCGTTTTTAGGCCACTGCTGGTGGAC
ATCAAAAACATGGAGAAGTACTTCACCCATGCCAAAGTCAGCGAGGTTCG
TGCTAGATTGGACACAACCAGAGACGGTACCAGGCGGGCGCTCGAGAAGT
ACTTCACCCATGCCAAAGTCAGCGAGGTTCGTGCTAGATTGGACACAACC
AGAGACGGTACCAGGCGGGCGCTC
back to top