mRNA_F-serratus_M_contig1282.2097.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1282.2097.1
Unique NamemRNA_F-serratus_M_contig1282.2097.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1282.2097.1 vs. uniprot
Match: D8LC47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC47_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.570e-30
Identity = 66/141 (46.81%), Postives = 87/141 (61.70%), Query Frame = 1
Query:   10 GKTTYEILNLFTEDCNGHRGSDIFPFGLAMDAGDPGFKTRTAIKGGEEGGNSLTNREVLLAMDPRVNSLSYIYDTYEWPHCMQDGLDFNDAWPADGTNISKRALKEGVEGVK-RPTFKNGELRYPMYKNFRE-KAAEIAKK 426
            G    E ++L+ E C+GHRGSD+FPFGL +D+   GF  +T I+G  + GN LTNRE L A D R NSL Y+YDT++W HC  DG++F+DAW        + A   G   +K RP FK GE+R P Y  + E KA   A+K
Sbjct:  162 GTVEVESISLYGETCSGHRGSDVFPFGL-LDSDTDGFTIKTGIRGNLDTGNQLTNREALQAFDARSNSLPYVYDTFKWTHCEADGVNFDDAW--------ENAKARGPSSIKSRPAFKEGEVRRPRYSGYEEIKANAQARK 293          
BLAST of mRNA_F-serratus_M_contig1282.2097.1 vs. uniprot
Match: D8LC46_ECTSI (Tyrosinase_Cu-bd domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LC46_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 6.260e-29
Identity = 68/140 (48.57%), Postives = 86/140 (61.43%), Query Frame = 1
Query:   10 GKTTYEILNLFTEDCNGHRGSDIFPFGLAMDAGDPGFKTRTAIKGGEEGGNSLTNREVLLAMDPRVNSLSYIYDTYEWPHCMQDGLDFNDAWPADGTNISKRALKEGVEGVKRPTFKNGELRYPMYKNFREK-AAEIAKK 426
            G    E L+L+ E C GH GSD+FPFG+ +D+   GF+ +T +KG  E GN+LTNRE+L A D R NS+SY+YDT++W HC  DG DFNDAW       +  A        +RP+FK G  R PMY    EK AA  AKK
Sbjct:  665 GTVEVESLSLYGETCQGHGGSDVFPFGI-LDSDTDGFEVKTGVKG-MENGNTLTNRELLQAFDARSNSVSYVYDTFKWTHCEADGFDFNDAW-------NGAAQARPTSSSRRPSFKQGAPRAPMYNILEEKRAARAAKK 795          
BLAST of mRNA_F-serratus_M_contig1282.2097.1 vs. uniprot
Match: D8LC28_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC28_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 9.980e-28
Identity = 64/139 (46.04%), Postives = 85/139 (61.15%), Query Frame = 1
Query:   10 GKTTYEILNLFTEDCNGHRGSDIFPFGLAMDAGDPGFKTRTAIKGGEEGGNSLTNREVLLAMDPRVNSLSYIYDTYEWPHCMQDGLDFNDAWPADGTNISKRALKEGVEGVKRPTFKNGELRYPMYKNFREKAAEIAKK 426
            G T  EI +++++ C GH GSD+FP+ L +D    GF+ +T I+G    GN LTNRE+L A+DPR NSLSY+YD +EW HC  DG DFNDAW  D T  S R  +      K     +G L + +Y +F EK A+  KK
Sbjct:  592 GTTVSEITSVYSDHCIGHHGSDVFPYYL-LDTDTDGFEVKTGIRGQPILGNMLTNREILAALDPRANSLSYVYDKFEWSHCEADGFDFNDAW--DDTEPSSRTTRPFSHQQKA----HGRLGFSLYSDFNEKMAQRLKK 723          
BLAST of mRNA_F-serratus_M_contig1282.2097.1 vs. uniprot
Match: A0A6H5J7R8_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R8_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 3.540e-27
Identity = 62/140 (44.29%), Postives = 83/140 (59.29%), Query Frame = 1
Query:   10 GKTTYEILNLFTEDCNGHRGSDIFPFGLAMDAGDPGFKTRTAIKGGEEGGNSLTNREVLLAMDPRVNSLSYIYDTYEWPHCMQDGLDFNDAWPADGTNISKRALKEGVEGVK-RPTFKNGELRYPMYKNFREKAAEIAKK 426
            G    E ++L+ + C GHRGSD+FPFGL +D+    F  +T I+G  + GN LTNREVL A D R NSL Y+YDT++W HC  DG++F+DAW        + A   G   +K RP FK GE+R P Y  + E  A    +
Sbjct:  630 GTVEVESISLYGDTCTGHRGSDVFPFGL-LDSDTDDFTIKTGIRGNPDTGNQLTNREVLQAFDARSNSLPYVYDTFKWTHCEADGVNFDDAW--------ENAKARGPSSIKSRPAFKEGEVRRPRYSGYDEIMANALAR 760          
BLAST of mRNA_F-serratus_M_contig1282.2097.1 vs. uniprot
Match: A0A6H5J676_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J676_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.520e-26
Identity = 67/161 (41.61%), Postives = 95/161 (59.01%), Query Frame = 1
Query:   10 GKTTYEILNLFTEDCNGHRGSDIFPFG-LAMDAGDPGFKTRTAIKGGE-EGGNSLTNREVLLAMDPRVNSLSYIYDTYEWPHCMQDGLDFNDAWPADGTNISKR---------ALKEGVEGVKRPT------FKNGELRYPMYKNFREKAAEI-AKKN*PS 438
            G T  + ++ ++E+C GHRGSD+FPF  LA +  D  F  +T IKG    GGN++TNREVL A DPR+N+L Y+YDT+EW HC +DG D  DAW A G   + R         + K+G   V R +      F+  +L +PMY   ++K A + A+K  P+
Sbjct:  612 GTTYSQPISKYSEECLGHRGSDVFPFDILANEVND--FTVQTGIKGSPLGGGNTMTNREVLAAFDPRINALPYVYDTFEWAHCAEDGFDLRDAWLAKGDEEASRGEGPGGQAMSAKKGPRAVSRQSIGGGTVFEKDDLPFPMYGTLKDKMAHLKARKESPA 770          
BLAST of mRNA_F-serratus_M_contig1282.2097.1 vs. uniprot
Match: D8LB18_ECTSI (ShTK domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB18_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.180e-23
Identity = 51/94 (54.26%), Postives = 63/94 (67.02%), Query Frame = 1
Query:   10 GKTTYEILNLFTEDCNGHRGSDIFPFGLAMDAGDPGFKTRTAIKGGEEGGNSLTNREVLLAMDPRVNSLSYIYDTYEWPHCMQDGLDFNDAWPA 291
            G T  E  + + + C+GH GSD+FPFGL  D  D GFK +T + G EE GN LTNREVL  +D R N L Y+YD + W HC+QDG+DF DAW A
Sbjct:  419 GNTVVETTSKYGDTCHGHSGSDVFPFGLLEDD-DAGFKIKTGMLGNEETGNKLTNREVLAVLDARYNMLPYVYDDFRWDHCLQDGIDFYDAWDA 511          
BLAST of mRNA_F-serratus_M_contig1282.2097.1 vs. uniprot
Match: D7G9A4_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A4_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.790e-23
Identity = 50/94 (53.19%), Postives = 64/94 (68.09%), Query Frame = 1
Query:   10 GKTTYEILNLFTEDCNGHRGSDIFPFGLAMDAGDPGFKTRTAIKGGEEGGNSLTNREVLLAMDPRVNSLSYIYDTYEWPHCMQDGLDFNDAWPA 291
            G T  E  + + + C+GH GSD+FPFGL +D  D  FK +T ++G EE GN LTNREVL  +D R N L Y+YD + W HC+QDG+DF DAW A
Sbjct:  590 GNTVVETTSTYGDTCHGHGGSDVFPFGL-LDDDDDAFKIKTGMQGNEETGNKLTNREVLAVLDARYNMLPYVYDNFRWDHCLQDGIDFYDAWDA 682          
BLAST of mRNA_F-serratus_M_contig1282.2097.1 vs. uniprot
Match: A0A6H5JRR4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRR4_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.680e-23
Identity = 56/133 (42.11%), Postives = 82/133 (61.65%), Query Frame = 1
Query:   25 EILNLFTEDCNGHRGSDIFPFGLAMDAGDPGFKTRTAIKGGEEGGNSLTNREVLLAMDPRVNSLSYIYDTYEWPHCMQDGLDFNDAWPADGTNISKRALKEGVEGVKRPTFKNGELRYPMYKNFREKAAEIAK 423
            E+++ + +DC GH GSD+FPF L +D+   GF+ +T +KG  E GNS TNREVL AMDPRVN LSY+YDT++W HC+  G DF+ A+    T  ++   K  ++    PT +N       + N ++  A  +K
Sbjct:  626 EMISRYGDDCVGHGGSDVFPFNL-LDSDHDGFEIKTGMKGNPEIGNSFTNREVLAAMDPRVNQLSYVYDTFKWDHCLGSGYDFDTAFDYSSTASAEDKAKSTMKNE--PTMRN------PWANLKKNGAGASK 749          
BLAST of mRNA_F-serratus_M_contig1282.2097.1 vs. uniprot
Match: A0A6H5K485_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K485_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.140e-20
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 1
Query:   10 GKTTYEILNLFTEDCNGHRGSDIFPFGLAMDAGDPGFKTRTAIKGGEEGGNSLTNREVLLAMDPRVNSLSYIYDTYEWPHCMQDGLDFNDAWPADGT 300
            G T  E  + + + C GH GSD+FPFGL +D  D   K +T ++G  E GN+LTNRE L  MD R N+L Y+YD ++W HC+  G+DF+DAW A  T
Sbjct:  711 GDTVVETTSNYGDKCYGHGGSDVFPFGL-LDNDDDALKIKTGMQGNGETGNTLTNREALANMDGRFNNLPYVYDNFKWEHCLDSGIDFDDAWDASTT 806          
BLAST of mRNA_F-serratus_M_contig1282.2097.1 vs. uniprot
Match: A0A6H5K0B2_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0B2_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 8.040e-12
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 1
Query:   28 ILNLFTEDCNGHRGSDIFPFGLAMDAGDPGFKTRTAIKGGEEGGNSLTNREVLLAMDPRVNSLSYIYDTYEWPHCMQDGLDFNDAWPADGTNISKRALKEGVEGV 342
            I++  ++ CNGHRGSDIFP+G+  D   P F        G++  N++ NR ++   DP  N+L +IYD +EW HC + G DF+D +           +K G +G 
Sbjct:  636 IISTRSDTCNGHRGSDIFPYGIMSDVITPQFTFY-----GKKAPNTMQNRMLIKLFDPSENALPFIYDNFEWSHCSEMGYDFSDFFDTS-------TMKSGPKGT 728          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1282.2097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LC47_ECTSI1.570e-3046.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LC46_ECTSI6.260e-2948.57Tyrosinase_Cu-bd domain-containing protein n=3 Tax... [more]
D8LC28_ECTSI9.980e-2846.04TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
A0A6H5J7R8_9PHAE3.540e-2744.29TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5J676_9PHAE1.520e-2641.61TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
D8LB18_ECTSI1.180e-2354.26ShTK domain containing protein n=1 Tax=Ectocarpus ... [more]
D7G9A4_ECTSI1.790e-2353.19Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JRR4_9PHAE3.680e-2342.11TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5K485_9PHAE2.140e-2048.45TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5K0B2_9PHAE8.040e-1236.19TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1282contigF-serratus_M_contig1282:255823..257431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1609
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1282.2097.1prot_F-serratus_M_contig1282.2097.1Fucus serratus malepolypeptideF-serratus_M_contig1282 255919..256254 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929224.2101884-UTR-F-serratus_M_contig1282:255822..2559181622929224.2101884-UTR-F-serratus_M_contig1282:255822..255918Fucus serratus maleUTRF-serratus_M_contig1282 255823..255918 +
1690962757.126765-UTR-F-serratus_M_contig1282:255822..2559181690962757.126765-UTR-F-serratus_M_contig1282:255822..255918Fucus serratus maleUTRF-serratus_M_contig1282 255823..255918 +
1622929224.2325819-UTR-F-serratus_M_contig1282:256254..2574311622929224.2325819-UTR-F-serratus_M_contig1282:256254..257431Fucus serratus maleUTRF-serratus_M_contig1282 256255..257431 +
1690962757.1441522-UTR-F-serratus_M_contig1282:256254..2574311690962757.1441522-UTR-F-serratus_M_contig1282:256254..257431Fucus serratus maleUTRF-serratus_M_contig1282 256255..257431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929224.2224655-CDS-F-serratus_M_contig1282:255918..2562541622929224.2224655-CDS-F-serratus_M_contig1282:255918..256254Fucus serratus maleCDSF-serratus_M_contig1282 255919..256254 +
1690962757.1357176-CDS-F-serratus_M_contig1282:255918..2562541690962757.1357176-CDS-F-serratus_M_contig1282:255918..256254Fucus serratus maleCDSF-serratus_M_contig1282 255919..256254 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1282.2097.1

>prot_F-serratus_M_contig1282.2097.1 ID=prot_F-serratus_M_contig1282.2097.1|Name=mRNA_F-serratus_M_contig1282.2097.1|organism=Fucus serratus male|type=polypeptide|length=112bp
MDAGDPGFKTRTAIKGGEEGGNSLTNREVLLAMDPRVNSLSYIYDTYEWP
HCMQDGLDFNDAWPADGTNISKRALKEGVEGVKRPTFKNGELRYPMYKNF
REKAAEIAKKN*
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mRNA from alignment at F-serratus_M_contig1282:255823..257431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1282.2097.1 ID=mRNA_F-serratus_M_contig1282.2097.1|Name=mRNA_F-serratus_M_contig1282.2097.1|organism=Fucus serratus male|type=mRNA|length=1609bp|location=Sequence derived from alignment at F-serratus_M_contig1282:255823..257431+ (Fucus serratus male)
CCGGAGACGGGCAAGACGACCTACGAGATCCTCAACCTATTCACCGAAGA CTGCAATGGTCACCGCGGGAGCGATATTTTCCCCTTCGGCCTCGCAATGG ACGCGGGTGACCCGGGATTCAAGACGCGCACGGCCATCAAGGGCGGAGAG GAGGGTGGCAACTCTTTGACTAACCGGGAGGTCCTGCTGGCCATGGACCC TCGCGTGAACAGCTTGTCGTACATCTACGACACCTACGAGTGGCCGCACT GCATGCAGGACGGCTTGGACTTCAACGACGCTTGGCCGGCGGACGGCACC AACATCTCGAAGCGCGCGCTCAAAGAAGGCGTTGAAGGCGTGAAGCGACC CACGTTCAAGAACGGCGAGCTTCGATACCCGATGTACAAAAACTTCAGGG AAAAGGCGGCGGAAATCGCCAAGAAAAACTAACCATCCTAATTGTGATGT GGACGGGGGTGGTATTTTTACCGCCCGCATCTGGTACACTTCCGCCCATG CCTCCCTGCTTATCCGCTCTAGTTCACAGCGAGGACCGAACCTGCCTTGT CCCGGAACCACTGCATTTTCTCCGGCGAGCAGGATAAATAACTCTTACTC TTCATTTTTAGAATTTCGAAGGCCTTTTCCGAGTGTACTCGCTTCGGAAG CAATCCCTGGCAACGGCCGTTCTCGATGAAGACGACAATGTCCTTGCTGG CTACTCTCTTGTCCGTTGTCTTCTATATTTTTTATTTATTTTTTTCCCTG CTTATCTCGGAAGGTATTACAGGTTTTTGATCTGGTTTGGTTCCGTCCAT CTTGTGACCACGGCTGGATTCGTAGCGGATCAGTTAATGTGAGATAAACA ACAACAACAACAACAACAACGTTAGGTCTTTTGGTGGTTTTTGAGATTCG TACAAAATGTTCTTATACATACTGGTAGCGCTAAATCTTCATTTCTGAAA TTTCCAAGGCGTTTTGCCTGTGTGCTCTCTCCAGAAGGAACCCGTGGTAA CGATCATTCTCCACGGTGACGTGAAGTCTTTGGTGATTTGATATTCTCAA AAATGACTTTATTGTTGTTCCCTCCCACCGCGCCCGCGCCACCACGTGAA GCGGAATGAGGGCGTCGTTAGCGCTACCTTATCTAGCGAAAAGGCATCCA CTGGTATACTTGTGCTTTTGGGGGGGGAGGTTGTTAGTGCTTTTGTCTTC GTTTTTTTCCGATGAGTGTTCATCATGTTGCTCCCATATCCATGAGTATG TCGTAATTTCAAAAGGGTTTTCTTCGTTGATGTGGCTTGTGAGCTGCTTC CTCGGCGCGAAAGCGCTCTTCGCCATGCACGCAGTGGTACAGAGGAAGTG TTTCTTGTCAACGCGAGTGAGGGGTCTCCTTGGGTACCTGTAATAGTCTG GTGCCTTGTCTGCTGGTATCGTTTTGTTCGGTTTTATGCCACGCCCTGCT GACTTGGGGCCGCAGTCGGTGACGGTACTTGTGTCGAGTGAGAGCTGCAT TCTTTTTTATACTCTTGTAGTTATAGTTCCTGCTTGCACATTGGCAAATA ATTATACAGAACACATGGAAGCTGACTTGAACGGAGGCGAGCTAACGCTT TAGGTCGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1282:255823..257431+

>mRNA_F-serratus_M_contig1282.2097.1 ID=mRNA_F-serratus_M_contig1282.2097.1|Name=mRNA_F-serratus_M_contig1282.2097.1|organism=Fucus serratus male|type=CDS|length=672bp|location=Sequence derived from alignment at F-serratus_M_contig1282:255823..257431+ (Fucus serratus male)
ATGGACGCGGGTGACCCGGGATTCAAGACGCGCACGGCCATCAAGGGCGG
AGAGGAGGGTGGCAACTCTTTGACTAACCGGGAGGTCCTGCTGGCCATGG
ACCCTCGCGTGAACAGCTTGTCGTACATCTACGACACCTACGAGTGGCCG
CACTGCATGCAGGACGGCTTGGACTTCAACGACGCTTGGCCGGCGGACGG
CACCAACATCTCGAAGCGCGCGCTCAAAGAAGGCGTTGAAGGCGTGAAGC
GACCCACGTTCAAGAACGGCGAGCTTCGATACCCGATGTACAAAAACTTC
AGGGAAAAGGCGGCGGAAATCGCCAAGAAAAACTAAATGGACGCGGGTGA
CCCGGGATTCAAGACGCGCACGGCCATCAAGGGCGGAGAGGAGGGTGGCA
ACTCTTTGACTAACCGGGAGGTCCTGCTGGCCATGGACCCTCGCGTGAAC
AGCTTGTCGTACATCTACGACACCTACGAGTGGCCGCACTGCATGCAGGA
CGGCTTGGACTTCAACGACGCTTGGCCGGCGGACGGCACCAACATCTCGA
AGCGCGCGCTCAAAGAAGGCGTTGAAGGCGTGAAGCGACCCACGTTCAAG
AACGGCGAGCTTCGATACCCGATGTACAAAAACTTCAGGGAAAAGGCGGC
GGAAATCGCCAAGAAAAACTAA
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