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Homology
BLAST of mRNA_F-serratus_M_contig962.20959.1 vs. uniprot
Match: D8LDJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDJ6_ECTSI) HSP 1 Score: 108 bits (269), Expect = 1.910e-20 Identity = 63/153 (41.18%), Postives = 83/153 (54.25%), Query Frame = 1
Query: 802 VTENVSVGAGRLP-WALWVCAMLLCVVLVSYEYIQGNLARWVPFVRGGPREGWAVDFDDVIAAARSRAGSLGSGKQNS-TAEVNGDLGIPDLVSEDNPLPLPDARRENVAPGRPAAQAYGSEDLMWDTRPKPFDHLVFDPVLGVVPWGVLDAW 1254
V E VG P W + C +LL LV +++G++ W+PF G R+ WA+D D IA ARSRAGS SG+ + + + D +PDL+S+ + N G G LMWD RPKP D+LVF PVLGVVP GV+ AW
Sbjct: 423 VLETAIVGGKAWPSWRAFACILLLS-ALVLGTFLRGSIPHWLPFFGGDRRQRWAIDLDSAIAHARSRAGSFCSGRASVFSGDPVDDSDLPDLISDSE-----EGEDGNGDQGVVPGDDDGETPLMWDRRPKPDDYLVFHPVLGVVPAGVVRAW 569
BLAST of mRNA_F-serratus_M_contig962.20959.1 vs. uniprot
Match: A0A6H5LRF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRF5_9PHAE) HSP 1 Score: 104 bits (260), Expect = 3.030e-19 Identity = 85/269 (31.60%), Postives = 119/269 (44.24%), Query Frame = 1
Query: 766 GDAAMNLAGKLVVTENVSVGAGRLP-WALWVCAMLLCVVLVSYEYIQGNLARWVPFVRGGPREGWAVDFDDVIAAARSRAGSLGSGKQNS-TAEVNGDLGIPDLVSEDNPLPLPDARRENVAPGRPAAQAYGSEDLMWDTRPKPFDHLVFDPVLGVVPWGVLDAW-----------------ARARREGAGPIGEGDAFTNRCSSVSSSVTEDDVDDGSASPRGACCGKPPSWGRRGHQKRALPPVRYTPEWHAWKAARASSKRTESAD 1515
G + N G+ E VG P W + C +LL + +S +++G++ W+PF GG R+ WA D D IA ARSRAGS SG+ + + + D +P L+S+ + N G G LMWD RPKP D+L+F PVLGVVP GV+ AW ARA G G+G +++ SS + + + + G GK LPP EW W AAR ++ AD
Sbjct: 408 GRRSENRGGEGGGLETGIVGGKSWPSWRTFACILLLSALGLS-TFLRGSMPHWLPFFGGGRRQRWAKDLDSAIAHARSRAGSFCSGRASVFSGDPVDDSDLPGLISDSE-----EGEDGNDTQGVVPGDDDGEAPLMWDRRPKPDDYLIFHPVLGVVPAGVVRAWGGDGCGGWGGVRAEAAGARAGGTNGGTXGKGCGCSSKSSSPRGARAPAAMSSKATAVGGVVKGK------------QLPPD----EWPEWLAARRATAAAAVAD 654
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-15_000310.1 |
Exons | 3 |
Model size | 2702 |
Cds size | 1716 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932735.1749191-UTR-F-serratus_M_contig962:246272..246431 | 1622932735.1749191-UTR-F-serratus_M_contig962:246272..246431 | Fucus serratus male | UTR | F-serratus_M_contig962 246273..246431 + |
1690964447.6315987-UTR-F-serratus_M_contig962:246272..246431 | 1690964447.6315987-UTR-F-serratus_M_contig962:246272..246431 | Fucus serratus male | UTR | F-serratus_M_contig962 246273..246431 + |
1622932735.2246184-UTR-F-serratus_M_contig962:248429..248909 | 1622932735.2246184-UTR-F-serratus_M_contig962:248429..248909 | Fucus serratus male | UTR | F-serratus_M_contig962 248430..248909 + |
1690964447.6802378-UTR-F-serratus_M_contig962:248429..248909 | 1690964447.6802378-UTR-F-serratus_M_contig962:248429..248909 | Fucus serratus male | UTR | F-serratus_M_contig962 248430..248909 + |
1622932735.240316-UTR-F-serratus_M_contig962:249090..249437 | 1622932735.240316-UTR-F-serratus_M_contig962:249090..249437 | Fucus serratus male | UTR | F-serratus_M_contig962 249091..249437 + |
1690964447.6904166-UTR-F-serratus_M_contig962:249090..249437 | 1690964447.6904166-UTR-F-serratus_M_contig962:249090..249437 | Fucus serratus male | UTR | F-serratus_M_contig962 249091..249437 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932735.192624-CDS-F-serratus_M_contig962:246431..247176 | 1622932735.192624-CDS-F-serratus_M_contig962:246431..247176 | Fucus serratus male | CDS | F-serratus_M_contig962 246432..247176 + |
1690964447.645803-CDS-F-serratus_M_contig962:246431..247176 | 1690964447.645803-CDS-F-serratus_M_contig962:246431..247176 | Fucus serratus male | CDS | F-serratus_M_contig962 246432..247176 + |
1622932735.2070618-CDS-F-serratus_M_contig962:247458..248429 | 1622932735.2070618-CDS-F-serratus_M_contig962:247458..248429 | Fucus serratus male | CDS | F-serratus_M_contig962 247459..248429 + |
1690964447.6671789-CDS-F-serratus_M_contig962:247458..248429 | 1690964447.6671789-CDS-F-serratus_M_contig962:247458..248429 | Fucus serratus male | CDS | F-serratus_M_contig962 247459..248429 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig962.20959.1 >prot_F-serratus_M_contig962.20959.1 ID=prot_F-serratus_M_contig962.20959.1|Name=mRNA_F-serratus_M_contig962.20959.1|organism=Fucus serratus male|type=polypeptide|length=572bp
MPGEQKGQGAVAEESKRIARSTEPFATRDVLGEIACKGQVQVLGSCAEGE QTTMNGDGKRPSQESHGKQEVLPGAVDAVEATALDIPEAPAWRDLDVCVA PRIWNSHAGKDVGGGSNAGGPNAVPGPPNEGSGAVIEMDSGRKSLKKSAH YCTDSLSCPEYASDLFNVPAAVPEQEAPERRGPRVKGVGTNIAAIETDRI DGGDAAMNLAGKLVVTENVSVGAGRLPWALWVCAMLLCVVLVSYEYIQGN LARWVPFVRGGPREGWAVDFDDVIAAARSRAGSLGSGKQNSTAEVNGDLG IPDLVSEDNPLPLPDARRENVAPGRPAAQAYGSEDLMWDTRPKPFDHLVF DPVLGVVPWGVLDAWARARREGAGPIGEGDAFTNRCSSVSSSVTEDDVDD GSASPRGACCGKPPSWGRRGHQKRALPPVRYTPEWHAWKAARASSKRTES ADRVGSGGKMGPEGSRSRSVNGGEAGAAVAAGAVAFGKNGSPVEAKIRMP KAVDSELEDVVAGAKGGIEYGDVSADACGGNPLEIASKVCDGTTSSEFYL ARLSSASREVSPIRPPVQPCV* back to topmRNA from alignment at F-serratus_M_contig962:246273..249437+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig962.20959.1 ID=mRNA_F-serratus_M_contig962.20959.1|Name=mRNA_F-serratus_M_contig962.20959.1|organism=Fucus serratus male|type=mRNA|length=3165bp|location=Sequence derived from alignment at F-serratus_M_contig962:246273..249437+ (Fucus serratus male) GGGGATGTGGAGGGCGACCCTTGCCATACCTCAAGGTTATCACCGTCTCG
TCTAGAGCCGCATGATGCCGAAGGTGGGGATGTGGAGGTCGACGAAGCGG
CTCTCGGATGCTCGGCAGGGAACCAACAAGTCTCATTTTGCCCTCGATCT
ACTGCCGAGATGCCGGGAGAGCAGAAAGGGCAGGGAGCCGTGGCGGAGGA
ATCGAAAAGGATTGCGCGTAGTACCGAGCCGTTCGCGACGAGGGATGTTT
TGGGGGAAATCGCTTGCAAGGGACAAGTTCAAGTGCTGGGCAGCTGTGCA
GAGGGTGAACAGACAACTATGAACGGAGATGGCAAGCGACCGTCCCAAGA
ATCGCACGGCAAGCAGGAGGTCCTACCTGGAGCCGTGGATGCTGTCGAAG
CCACCGCACTCGACATACCGGAGGCGCCCGCTTGGCGGGACCTCGATGTG
TGCGTTGCACCTCGGATATGGAATTCCCACGCGGGAAAGGATGTCGGCGG
CGGCAGCAACGCCGGAGGCCCAAACGCAGTGCCGGGGCCACCCAACGAGG
GGAGCGGTGCGGTCATCGAGATGGATTCTGGACGGAAGTCGCTCAAGAAA
AGCGCGCACTATTGCACCGACAGCTTGTCCTGTCCCGAGTACGCCAGCGA
CCTCTTTAACGTCCCCGCTGCCGTGCCCGAGCAGGAAGCCCCGGAACGAA
GGGGTCCGCGCGTCAAAGGGGTTGGAACGAACATCGCTGCCATCGAAACC
GATCGTATTGATGGCGGCGATGCTGCGATGAATCTCGCGGGGAAGTTAGT
TGTGACGGAGAATGTTTCAGTGGGCGCGGGCCGTTTGCCCTGGGCCTTGT
GGGTGTGCGCGATGCTACTGTGTGTGGTGCTCGTTTCCTACGAATACATT
CAAGGTGGGTACGGTAAAGTAGCGTTTTCACCTATTTCGCGCGAAATTTT
GTTCGGCAAAAGTGTAGGCGAAGCTGTCTCCGTCGCCAAATAGATAAAAC
TATTTCCAAGACCTGCGTTGACCTTCTGCCGAACCCGATGCTTCTTTCCT
TCGGAGTACAGAGATGGTTCGACGAAACACCTGTTAGCAAAAACGCTCGA
CTCCACTCCCCGCGACACGCGAGCCATTGCACGCGAAAACCCCTTTCAAG
AAGTGTTTACTCGTGATCGTAAACCTCGCACCACAGGAAACTTAGCGCGC
TGGGTCCCGTTCGTGCGCGGGGGCCCGCGCGAGGGCTGGGCCGTGGACTT
CGACGACGTGATCGCGGCGGCGCGTTCTCGGGCAGGAAGCCTCGGCTCCG
GAAAACAGAACAGCACGGCAGAAGTCAACGGCGACCTCGGAATCCCGGAC
CTAGTGTCAGAGGACAATCCCCTACCCCTTCCGGATGCAAGGCGGGAAAA
TGTGGCCCCGGGAAGACCGGCAGCGCAGGCGTATGGCAGCGAAGATCTCA
TGTGGGACACCCGACCGAAACCGTTTGACCACTTGGTGTTCGACCCCGTG
CTAGGTGTCGTCCCATGGGGTGTTTTGGATGCGTGGGCGCGCGCGCGTCG
GGAGGGAGCAGGCCCCATCGGCGAGGGCGACGCGTTTACGAATCGATGCT
CGTCGGTATCGAGTTCGGTCACGGAGGACGACGTTGATGACGGCTCGGCG
TCACCGCGGGGCGCTTGCTGTGGAAAGCCCCCCTCTTGGGGAAGGCGGGG
ACATCAGAAGCGCGCGCTCCCTCCCGTGCGTTACACTCCAGAGTGGCACG
CATGGAAGGCGGCACGCGCAAGTTCAAAGCGGACAGAATCGGCCGATCGG
GTGGGTTCTGGAGGCAAGATGGGTCCAGAGGGATCTCGTTCCCGTTCTGT
GAATGGCGGGGAAGCAGGGGCAGCGGTGGCTGCAGGGGCGGTTGCTTTCG
GGAAAAACGGAAGCCCGGTTGAAGCGAAGATCCGGATGCCGAAAGCAGTC
GACTCGGAGCTTGAGGATGTTGTGGCAGGGGCGAAAGGTGGTATCGAATA
CGGTGACGTCAGTGCGGACGCGTGCGGTGGAAATCCGTTAGAAATCGCCT
CAAAAGTTTGCGACGGCACGACATCTTCCGAGTTCTATTTGGCGCGGCTT
TCCAGCGCATCGCGTGAGGTCTCACCCATTCGTCCGCCGGTGCAACCTTG
CGTTTGATCGATACCCGCCGTCGGCTGCCGAGGAAATTGTCACTGGACCT
CACCATTTGTCGAGGACACAACGTGACATCAGTTTCTCTTTTGTGTGTTG
TGGAAAGGGCGATGTGTTTTTGGGATCGTAGCAACGGTTTCGGAGTTTTC
TGTGCTTGAGGCAATTTTGATAGTGTACATTACGCAGTGCTGTAGCCTGC
AGCCGAAGGGTTGTCATAACTTATGATTTGTCCCCTCCAGTGTTATTCGA
GTGTGATGTTGCAGCGGTGTGCCGGACACAGTGTTTTTTGTAAGACCTGA
CGCTATGCGCTATGCAGGGGTAGCGTTATCTAGTGCGCTCCACCACACGG
TTGGGGTCTTGATCGGTCCTTATCGCGTGGTGGCGTTCGACCATTAAATC
ACAGATTCCGTGCGTTCCAATATTTTGTCATGTGCCGAGAAGGCTGGTTT
TCCCCCAGAATTCAAGATGCTGGCATGGTGGAGAAGGGCACAGAGAGTCG
ACTTGGGAATCCAATCTCTCTCGGAAATGCGCGTGGCATTGGAGCGAATA
GAAAATAAAAATGAGAATCGGTGTCCCATGGCGCATCCTGTTGGAACACC
AATATTTTGTCATGTGCCGAGAAGGCTGGTTTTCCCCCGGAATTCAAGAT
GCTGGCATGGTGAAGAAGGGCACAGAGAGTCGACTTGGGAATCCAATCTC
TCTCGGAAATGCGCGTGGCATTGGAGCGAATAGAAAATAAAAATGAGAAT
CGGTGTCCCATGGCGCATCCTGTTGGAACACCGTAGCTCAACCAAGGTGG
ATCATTTCACGGTATGCTGACGAAATGCAGTCTGTGTCACGGATGGCGTG
GTGAACCCGGGAACTAAAAACCACGCTCTGTGTTCCCACTCACGCGTGAA
TCGGTGCGATGCCACTTCGCGCAAGTAGGGCGTGTCTTGAATGGCTTGAC
ACGCCAACCGCAGAATTGCCAAGTGGGGGATAATAGAATATCGTCTAGGT
AGTGCAACGTCGCGC back to topCoding sequence (CDS) from alignment at F-serratus_M_contig962:246273..249437+ >mRNA_F-serratus_M_contig962.20959.1 ID=mRNA_F-serratus_M_contig962.20959.1|Name=mRNA_F-serratus_M_contig962.20959.1|organism=Fucus serratus male|type=CDS|length=3432bp|location=Sequence derived from alignment at F-serratus_M_contig962:246273..249437+ (Fucus serratus male) ATGCCGGGAGAGCAGAAAGGGCAGGGAGCCGTGGCGGAGGAATCGAAAAG GATTGCGCGTAGTACCGAGCCGTTCGCGACGAGGGATGTTTTGGGGGAAA TCGCTTGCAAGGGACAAGTTCAAGTGCTGGGCAGCTGTGCAGAGGGTGAA CAGACAACTATGAACGGAGATGGCAAGCGACCGTCCCAAGAATCGCACGG CAAGCAGGAGGTCCTACCTGGAGCCGTGGATGCTGTCGAAGCCACCGCAC TCGACATACCGGAGGCGCCCGCTTGGCGGGACCTCGATGTGTGCGTTGCA CCTCGGATATGGAATTCCCACGCGGGAAAGGATGTCGGCGGCGGCAGCAA CGCCGGAGGCCCAAACGCAGTGCCGGGGCCACCCAACGAGGGGAGCGGTG CGGTCATCGAGATGGATTCTGGACGGAAGTCGCTCAAGAAAAGCGCGCAC TATTGCACCGACAGCTTGTCCTGTCCCGAGTACGCCAGCGACCTCTTTAA CGTCCCCGCTGCCGTGCCCGAGCAGGAAGCCCCGGAACGAAGGGGTCCGC GCGTCAAAGGGGTTGGAACGAACATCGCTGCCATCGAAACCGATCGTATT GATGGCGGCGATGCTGCGATGAATCTCGCGGGGAAGTTAGTTGTGACGGA GAATGTTTCAGTGGGCGCGGGCCGTTTGCCCTGGGCCTTGTGGGTGTGCG CGATGCTACTGTGTGTGGTGCTCGTTTCCTACGAATACATTCAAGATGCC GGGAGAGCAGAAAGGGCAGGGAGCCGTGGCGGAGGAATCGAAAAGGATTG CGCGTAGTACCGAGCCGTTCGCGACGAGGGATGTTTTGGGGGAAATCGCT TGCAAGGGACAAGTTCAAGTGCTGGGCAGCTGTGCAGAGGGTGAACAGAC AACTATGAACGGAGATGGCAAGCGACCGTCCCAAGAATCGCACGGCAAGC AGGAGGTCCTACCTGGAGCCGTGGATGCTGTCGAAGCCACCGCACTCGAC ATACCGGAGGCGCCCGCTTGGCGGGACCTCGATGTGTGCGTTGCACCTCG GATATGGAATTCCCACGCGGGAAAGGATGTCGGCGGCGGCAGCAACGCCG GAGGCCCAAACGCAGTGCCGGGGCCACCCAACGAGGGGAGCGGTGCGGTC ATCGAGATGGATTCTGGACGGAAGTCGCTCAAGAAAAGCGCGCACTATTG CACCGACAGCTTGTCCTGTCCCGAGTACGCCAGCGACCTCTTTAACGTCC CCGCTGCCGTGCCCGAGCAGGAAGCCCCGGAACGAAGGGGTCCGCGCGTC AAAGGGGTTGGAACGAACATCGCTGCCATCGAAACCGATCGTATTGATGG CGGCGATGCTGCGATGAATCTCGCGGGGAAGTTAGTTGTGACGGAGAATG TTTCAGTGGGCGCGGGCCGTTTGCCCTGGGCCTTGTGGGTGTGCGCGATG CTACTGTGTGTGGTGCTCGTTTCCTACGAATACATTCAAGGAAACTTAGC GCGCTGGGTCCCGTTCGTGCGCGGGGGCCCGCGCGAGGGCTGGGCCGTGG ACTTCGACGACGTGATCGCGGCGGCGCGTTCTCGGGCAGGAAGCCTCGGC TCCGGAAAACAGAACAGCACGGCAGAAGTCAACGGCGACCTCGGAATCCC GGACCTAGTGTCAGAGGACAATCCCCTACCCCTTCCGGATGCAAGGCGGG AAAATGTGGCCCCGGGAAGACCGGCAGCGCAGGCGTATGGCAGCGAAGAT CTCATGTGGGACACCCGACCGAAACCGTTTGACCACTTGGTGTTCGACCC CGTGCTAGGTGTCGTCCCATGGGGTGTTTTGGATGCGTGGGCGCGCGCGC GTCGGGAGGGAGCAGGCCCCATCGGCGAGGGCGACGCGTTTACGAATCGA TGCTCGTCGGTATCGAGTTCGGTCACGGAGGACGACGTTGATGACGGCTC GGCGTCACCGCGGGGCGCTTGCTGTGGAAAGCCCCCCTCTTGGGGAAGGC GGGGACATCAGAAGCGCGCGCTCCCTCCCGTGCGTTACACTCCAGAGTGG CACGCATGGAAGGCGGCACGCGCAAGTTCAAAGCGGACAGAATCGGCCGA TCGGGTGGGTTCTGGAGGCAAGATGGGTCCAGAGGGATCTCGTTCCCGTT CTGTGAATGGCGGGGAAGCAGGGGCAGCGGTGGCTGCAGGGGCGGTTGCT TTCGGGAAAAACGGAAGCCCGGTTGAAGCGAAGATCCGGATGCCGAAAGC AGTCGACTCGGAGCTTGAGGATGTTGTGGCAGGGGCGAAAGGTGGTATCG AATACGGTGACGTCAGTGCGGACGCGTGCGGTGGAAATCCGTTAGAAATC GCCTCAAAAGTTTGCGACGGCACGACATCTTCCGAGTTCTATTTGGCGCG GCTTTCCAGCGCATCGCGTGAGGTCTCACCCATTCGTCCGCCGGTGCAAC CTTGCGTTTGAGAAACTTAGCGCGCTGGGTCCCGTTCGTGCGCGGGGGCC CGCGCGAGGGCTGGGCCGTGGACTTCGACGACGTGATCGCGGCGGCGCGT TCTCGGGCAGGAAGCCTCGGCTCCGGAAAACAGAACAGCACGGCAGAAGT CAACGGCGACCTCGGAATCCCGGACCTAGTGTCAGAGGACAATCCCCTAC CCCTTCCGGATGCAAGGCGGGAAAATGTGGCCCCGGGAAGACCGGCAGCG CAGGCGTATGGCAGCGAAGATCTCATGTGGGACACCCGACCGAAACCGTT TGACCACTTGGTGTTCGACCCCGTGCTAGGTGTCGTCCCATGGGGTGTTT TGGATGCGTGGGCGCGCGCGCGTCGGGAGGGAGCAGGCCCCATCGGCGAG GGCGACGCGTTTACGAATCGATGCTCGTCGGTATCGAGTTCGGTCACGGA GGACGACGTTGATGACGGCTCGGCGTCACCGCGGGGCGCTTGCTGTGGAA AGCCCCCCTCTTGGGGAAGGCGGGGACATCAGAAGCGCGCGCTCCCTCCC GTGCGTTACACTCCAGAGTGGCACGCATGGAAGGCGGCACGCGCAAGTTC AAAGCGGACAGAATCGGCCGATCGGGTGGGTTCTGGAGGCAAGATGGGTC CAGAGGGATCTCGTTCCCGTTCTGTGAATGGCGGGGAAGCAGGGGCAGCG GTGGCTGCAGGGGCGGTTGCTTTCGGGAAAAACGGAAGCCCGGTTGAAGC GAAGATCCGGATGCCGAAAGCAGTCGACTCGGAGCTTGAGGATGTTGTGG CAGGGGCGAAAGGTGGTATCGAATACGGTGACGTCAGTGCGGACGCGTGC GGTGGAAATCCGTTAGAAATCGCCTCAAAAGTTTGCGACGGCACGACATC TTCCGAGTTCTATTTGGCGCGGCTTTCCAGCGCATCGCGTGAGGTCTCAC CCATTCGTCCGCCGGTGCAACCTTGCGTTTGA back to top
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