mRNA_F-serratus_M_contig950.20870.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig950.20870.1
Unique NamemRNA_F-serratus_M_contig950.20870.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig950.20870.1 vs. uniprot
Match: D8LL13_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL13_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 2.160e-50
Identity = 79/99 (79.80%), Postives = 89/99 (89.90%), Query Frame = 1
Query:    1 AVYYNDHHFHYSYLVNAAAVLAHLRPSWVTDEHKEWVETLIRDVSNPNKNDDYFPQFRSFDWFCGHSWARGLLFAYDGKDQESTSEDVNFSYALTMWAM 297
            A YYNDHHFHYSY++NAAAVLAHLRPSW T ++  WV TLIRDV++PNK D +FPQFRSFDWF GHSWARGLLFA+DGKDQESTSEDVNF YA+TMWA+
Sbjct:  486 ASYYNDHHFHYSYVINAAAVLAHLRPSWATSDNVAWVNTLIRDVNDPNKYDAFFPQFRSFDWFSGHSWARGLLFAFDGKDQESTSEDVNFFYAMTMWAI 584          
BLAST of mRNA_F-serratus_M_contig950.20870.1 vs. uniprot
Match: D7FTA2_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA2_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 6.860e-49
Identity = 73/99 (73.74%), Postives = 88/99 (88.89%), Query Frame = 1
Query:    1 AVYYNDHHFHYSYLVNAAAVLAHLRPSWVTDEHKEWVETLIRDVSNPNKNDDYFPQFRSFDWFCGHSWARGLLFAYDGKDQESTSEDVNFSYALTMWAM 297
            A +YNDHHFHYSYL++AAA LAHLRP W   ++K WV++L+RDV++PNK D+YFPQFRSFDWF GHSWARGLLF+YDGKDQESTSED NF YA+T+WA+
Sbjct:  484 AAFYNDHHFHYSYLLHAAAALAHLRPEWADSDNKNWVDSLVRDVNSPNKEDEYFPQFRSFDWFSGHSWARGLLFSYDGKDQESTSEDANFFYAMTLWAI 582          
BLAST of mRNA_F-serratus_M_contig950.20870.1 vs. uniprot
Match: D7FGU3_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU3_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.120e-47
Identity = 75/97 (77.32%), Postives = 86/97 (88.66%), Query Frame = 1
Query:    1 AVYYNDHHFHYSYLVNAAAVLAHLRPSWVTDEHKEWVETLIRDVSNPNKNDDYFPQFRSFDWFCGHSWARGLLFAYDGKDQESTSEDVNFSYALTMW 291
            A YYNDHHFHYSY++N AAVLA+LRPSW+ +    WV TLIRDV++P+++D YFPQFRSFDWF GHSWARGLLFAYDGKDQESTSEDVNF YA+TMW
Sbjct:  485 ASYYNDHHFHYSYVINVAAVLAYLRPSWIDNTKVAWVNTLIRDVNSPDQSDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQESTSEDVNFYYAMTMW 581          
BLAST of mRNA_F-serratus_M_contig950.20870.1 vs. uniprot
Match: A0A6H5JFJ7_9PHAE (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ7_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 8.840e-45
Identity = 75/111 (67.57%), Postives = 87/111 (78.38%), Query Frame = 1
Query:    1 AVYYNDHHFHYSYLVNAAAVLAHLRPSWVTDEHKEWVETLIRDVSNPNK------------NDDYFPQFRSFDWFCGHSWARGLLFAYDGKDQESTSEDVNFSYALTMWAM 297
            A YYNDHHFHYSY++N AAVLA+LRPSW+ +    WV TLIRDV++P++            +D YFPQFRSFDWF GHSWARGLLFAYDGKDQESTSEDVNF YA+TMW +
Sbjct:  293 ASYYNDHHFHYSYVINVAAVLAYLRPSWIDNTKVAWVNTLIRDVNSPDQARSADMSRRFSLSDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQESTSEDVNFYYAMTMWGI 403          
BLAST of mRNA_F-serratus_M_contig950.20870.1 vs. uniprot
Match: A0A8H6CJ46_9LECA (Endo-1,3(4)-beta-glucanase n=3 Tax=Parmeliaceae TaxID=78060 RepID=A0A8H6CJ46_9LECA)

HSP 1 Score: 141 bits (356), Expect = 4.690e-37
Identity = 61/95 (64.21%), Postives = 76/95 (80.00%), Query Frame = 1
Query:    7 YYNDHHFHYSYLVNAAAVLAHLRPSWVTDEHKEWVETLIRDVSNPNKNDDYFPQFRSFDWFCGHSWARGLLFAYDGKDQESTSEDVNFSYALTMW 291
            YYNDHHFH+SY V AA+++A+L P+W+   H++WV TL+RD SNPN ND YFP  RSFDW+ GHSWA+GL  + DGKDQESTSED  FSYA+ +W
Sbjct:  557 YYNDHHFHWSYFVYAASIIAYLDPAWLP-AHRDWVNTLVRDASNPNSNDPYFPVSRSFDWYHGHSWAKGLFDSGDGKDQESTSEDALFSYAVKLW 650          
BLAST of mRNA_F-serratus_M_contig950.20870.1 vs. uniprot
Match: M7U183_EUTLA (Endo-1,3(4)-beta-glucanase n=1 Tax=Eutypa lata (strain UCR-EL1) TaxID=1287681 RepID=M7U183_EUTLA)

HSP 1 Score: 140 bits (353), Expect = 8.530e-37
Identity = 57/95 (60.00%), Postives = 77/95 (81.05%), Query Frame = 1
Query:    7 YYNDHHFHYSYLVNAAAVLAHLRPSWVTDEHKEWVETLIRDVSNPNKNDDYFPQFRSFDWFCGHSWARGLLFAYDGKDQESTSEDVNFSYALTMW 291
            YYNDHHFHY Y + AAA++ +L PSW+T+E+ ++V TL+RD++NP+K+D+YFPQ R+FDW+ GHSWA GL    DGKDQES+SED   +YA+ MW
Sbjct:  423 YYNDHHFHYGYFIYAAAIIGYLDPSWLTNENVDYVNTLVRDIANPSKDDNYFPQSRNFDWYHGHSWAHGLYDTLDGKDQESSSEDTMHAYAIKMW 517          
BLAST of mRNA_F-serratus_M_contig950.20870.1 vs. uniprot
Match: A0A1L9UU14_ASPBC (Endo-1,3(4)-beta-glucanase n=3 Tax=Aspergillus TaxID=5052 RepID=A0A1L9UU14_ASPBC)

HSP 1 Score: 139 bits (351), Expect = 2.390e-36
Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 1
Query:    7 YYNDHHFHYSYLVNAAAVLAHLRPSWVTDEHKEWVETLIRDVSNPNKNDDYFPQFRSFDWFCGHSWARGLLFAYDGKDQESTSEDVNFSYALTMW 291
            YYNDHHFHY Y ++AAA++  L PSW++D +K WV  L+RD  N   ND YFP  RSFDW+ GHSWA+GL  ++DGKD+ESTSED  F+YAL MW
Sbjct:  730 YYNDHHFHYGYFIHAAAIIGSLDPSWLSDSNKAWVNMLVRDAGNSAANDPYFPFSRSFDWYHGHSWAKGLFESFDGKDEESTSEDTMFAYALKMW 824          
BLAST of mRNA_F-serratus_M_contig950.20870.1 vs. uniprot
Match: A0A1Y2GEC0_9FUNG (Endo-1,3(4)-beta-glucanase n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GEC0_9FUNG)

HSP 1 Score: 139 bits (350), Expect = 2.560e-36
Identity = 54/94 (57.45%), Postives = 75/94 (79.79%), Query Frame = 1
Query:   10 YNDHHFHYSYLVNAAAVLAHLRPSWVTDEHKEWVETLIRDVSNPNKNDDYFPQFRSFDWFCGHSWARGLLFAYDGKDQESTSEDVNFSYALTMW 291
            YNDHH+HY Y ++ AA++ HL P W T +   +V +L+RDV+NP+K+D YFP FRSFDWF GHSW++G+  + DGKD+ESTSED+NF YA+++W
Sbjct:  464 YNDHHYHYGYFIHTAAIIRHLDPKWRTSDVSAFVNSLVRDVANPSKDDPYFPVFRSFDWFMGHSWSQGIFVSLDGKDEESTSEDINFYYAMSLW 557          
BLAST of mRNA_F-serratus_M_contig950.20870.1 vs. uniprot
Match: G8ZXE3_TORDC (Endo-1,3(4)-beta-glucanase n=1 Tax=Torulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) TaxID=1076872 RepID=G8ZXE3_TORDC)

HSP 1 Score: 139 bits (350), Expect = 2.920e-36
Identity = 63/102 (61.76%), Postives = 81/102 (79.41%), Query Frame = 1
Query:    7 YYNDHHFHYSYLVNAAAVLAHL-----RPSWVTDEHKEWVETLIRDVSNPNKNDDYFPQFRSFDWFCGHSWARGLLFAYDGKDQESTSEDVNFSYALTMWAM 297
            YYNDHHFHYSY V AAA++A +       +W+  ++KEWVE L+RD +NP++ND YFP FR+FDWFCGHSWA+GL  + DGKD+ES+SEDVN SYAL +WA+
Sbjct:  520 YYNDHHFHYSYHVIAAAIVAKVDRDAGENNWLA-QNKEWVENLLRDYANPSQNDIYFPAFRAFDWFCGHSWAKGLFESGDGKDEESSSEDVNASYALKLWAL 620          
BLAST of mRNA_F-serratus_M_contig950.20870.1 vs. uniprot
Match: A0A8H3HZR9_9LECA (Endo-1,3(4)-beta-glucanase n=1 Tax=Heterodermia speciosa TaxID=116794 RepID=A0A8H3HZR9_9LECA)

HSP 1 Score: 139 bits (350), Expect = 3.070e-36
Identity = 57/95 (60.00%), Postives = 76/95 (80.00%), Query Frame = 1
Query:    7 YYNDHHFHYSYLVNAAAVLAHLRPSWVTDEHKEWVETLIRDVSNPNKNDDYFPQFRSFDWFCGHSWARGLLFAYDGKDQESTSEDVNFSYALTMW 291
            YYNDHHFHY+Y V+ A+++A+L P+W+T  +K WV TLIRD +NP+  D YFPQ R+FDW+ GHSWA+GL  ++DGKD+ES+SED   SYA+ MW
Sbjct:  561 YYNDHHFHYAYFVHTASIIAYLDPTWLTATNKAWVNTLIRDAANPSVADPYFPQSRAFDWYHGHSWAKGLFDSFDGKDEESSSEDTFMSYAMKMW 655          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig950.20870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL13_ECTSI2.160e-5079.80Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
D7FTA2_ECTSI6.860e-4973.74Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
D7FGU3_ECTSI1.120e-4777.32Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
A0A6H5JFJ7_9PHAE8.840e-4567.57Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. ... [more]
A0A8H6CJ46_9LECA4.690e-3764.21Endo-1,3(4)-beta-glucanase n=3 Tax=Parmeliaceae Ta... [more]
M7U183_EUTLA8.530e-3760.00Endo-1,3(4)-beta-glucanase n=1 Tax=Eutypa lata (st... [more]
A0A1L9UU14_ASPBC2.390e-3661.05Endo-1,3(4)-beta-glucanase n=3 Tax=Aspergillus Tax... [more]
A0A1Y2GEC0_9FUNG2.560e-3657.45Endo-1,3(4)-beta-glucanase n=1 Tax=Lobosporangium ... [more]
G8ZXE3_TORDC2.920e-3661.76Endo-1,3(4)-beta-glucanase n=1 Tax=Torulaspora del... [more]
A0A8H3HZR9_9LECA3.070e-3660.00Endo-1,3(4)-beta-glucanase n=1 Tax=Heterodermia sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig950contigF-serratus_M_contig950:155817..157059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue7.7e-43
Seed eggNOG ortholog2880.D8LL13
KEGG koko:K01180
Hectar predicted targeting categoryother localisation
EggNOG free text desc.chitin catabolic process
EggNOG OGsCOG5498@1,KOG2254@2759
EC3.2.1.6
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons4
Model size300
Cds size297
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig950.20870.1prot_F-serratus_M_contig950.20870.1Fucus serratus malepolypeptideF-serratus_M_contig950 155817..157057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932718.4774585-CDS-F-serratus_M_contig950:155816..1558371622932718.4774585-CDS-F-serratus_M_contig950:155816..155837Fucus serratus maleCDSF-serratus_M_contig950 155817..155837 +
1690964438.674044-CDS-F-serratus_M_contig950:155816..1558371690964438.674044-CDS-F-serratus_M_contig950:155816..155837Fucus serratus maleCDSF-serratus_M_contig950 155817..155837 +
1622932718.5003216-CDS-F-serratus_M_contig950:156138..1562641622932718.5003216-CDS-F-serratus_M_contig950:156138..156264Fucus serratus maleCDSF-serratus_M_contig950 156139..156264 +
1690964438.6867397-CDS-F-serratus_M_contig950:156138..1562641690964438.6867397-CDS-F-serratus_M_contig950:156138..156264Fucus serratus maleCDSF-serratus_M_contig950 156139..156264 +
1622932718.525543-CDS-F-serratus_M_contig950:156633..1567291622932718.525543-CDS-F-serratus_M_contig950:156633..156729Fucus serratus maleCDSF-serratus_M_contig950 156634..156729 +
1690964438.6982553-CDS-F-serratus_M_contig950:156633..1567291690964438.6982553-CDS-F-serratus_M_contig950:156633..156729Fucus serratus maleCDSF-serratus_M_contig950 156634..156729 +
1622932718.5439656-CDS-F-serratus_M_contig950:157003..1570571622932718.5439656-CDS-F-serratus_M_contig950:157003..157057Fucus serratus maleCDSF-serratus_M_contig950 157004..157057 +
1690964438.709219-CDS-F-serratus_M_contig950:157003..1570571690964438.709219-CDS-F-serratus_M_contig950:157003..157057Fucus serratus maleCDSF-serratus_M_contig950 157004..157057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig950.20870.1

>prot_F-serratus_M_contig950.20870.1 ID=prot_F-serratus_M_contig950.20870.1|Name=mRNA_F-serratus_M_contig950.20870.1|organism=Fucus serratus male|type=polypeptide|length=99bp
AVYYNDHHFHYSYLVNAAAVLAHLRPSWVTDEHKEWVETLIRDVSNPNKN
DDYFPQFRSFDWFCGHSWARGLLFAYDGKDQESTSEDVNFSYALTMWAM
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mRNA from alignment at F-serratus_M_contig950:155817..157059+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig950.20870.1 ID=mRNA_F-serratus_M_contig950.20870.1|Name=mRNA_F-serratus_M_contig950.20870.1|organism=Fucus serratus male|type=mRNA|length=1243bp|location=Sequence derived from alignment at F-serratus_M_contig950:155817..157059+ (Fucus serratus male)
GCCGTCTATTACAACGACCACGTGAGGGCAGAAATAATCGACGGAACCAC GTGTAGAAATATCCGTAGAACCTCCATCTCTGCCGCATCGATATAGTAGA GCCTAGGGCAGATGGCGCCTCTTCTCCCTCCTTCCTAGGCTGCTCTTCGA GAAATGTCTCGACTTTCCTTTGCTTTCCACGCCGTGAGGGGCCGGAACAC GAACGTAAACCCCGATCAACCCAATGCCCCATTTCGATTCGTTTCGCTTT GGACATCCCCCACTTCTATCGCTCACCCTGCCCGTACCCCCGCCTAATTT TCTCCCCAAACCCCGCACCCAGCATTTCCACTACTCATACCTTGTCAACG CCGCGGCGGTTCTGGCACACTTGCGACCCTCCTGGGTCACGGATGAACAC AAGGAATGGGTCGAGACGCTCATCCGCGACGTCAGCAACCCCAACAAGGT ACGGGTACAGCGTGTCATCGTAGAGATTTTCACCCTCGGAAAGCGCCAGC GCCGATCGCCGTGCTTTGTTGGGACGGTAGATGCAAGGGGCAGGCGGAGA TCCCACGAAGCTTTTCGTCGGCCTGTCACAGGGAGATTTCGAAACGCCTC CCGCCCCCTACTTAACCGTCTACTGTGCACATTGGTGTTTCGTTTTATGG AACAATGCGGTGCCAGTGGGTTGTGTTTGTGGCAGCAGTTGTCGGCTAGA GTGAGTCACATTGGTGCGGCAAGAATACCAGAGCATCGGTAGCAAAGACA GACGATTTTGACCTCTCTGACGAAATCCATCGCAACCGTGTCACCTGCCG TTGCTTCGCCGGAGCAGAATGACGACTACTTCCCCCAGTTCCGGTCGTTC GACTGGTTCTGCGGCCACAGCTGGGCGAGGGGCCTGTTGTTCGCCTATGA CGGGAAGGATCAGGTGCTGCTGTCGCTCCCGGCTGAGTGAAGGCATCCGT CGTCCTAACGCTTTTGCATCGGAGTGCGTGGGTCTGATACCACATTTTCT TGATGCTCCTAGTCAATCCATAAATGTGCAGCAACAGTGGTACGTACCCG AAGGGACTGCTGAGCTTCTTCAGTTTCAGTCTTCCGTCCAGCGCTGCGCA AAGATTGCACGTCTTGGTTTATCGTCTAGGGTGATGCAAAAACTTGCCAC TGTTTTACACCGCCCTCACGCCGGGCACCTGCCGCAGGAATCCACCTCGG AGGACGTGAATTTCTCGTACGCCCTGACTATGTGGGCAATGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig950:155817..157059+

>mRNA_F-serratus_M_contig950.20870.1 ID=mRNA_F-serratus_M_contig950.20870.1|Name=mRNA_F-serratus_M_contig950.20870.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig950:155817..157059+ (Fucus serratus male)
GCCGTCTATTACAACGACCACGCCGTCTATTACAACGACCACCATTTCCA
CTACTCATACCTTGTCAACGCCGCGGCGGTTCTGGCACACTTGCGACCCT
CCTGGGTCACGGATGAACACAAGGAATGGGTCGAGACGCTCATCCGCGAC
GTCAGCAACCCCAACAAGCATTTCCACTACTCATACCTTGTCAACGCCGC
GGCGGTTCTGGCACACTTGCGACCCTCCTGGGTCACGGATGAACACAAGG
AATGGGTCGAGACGCTCATCCGCGACGTCAGCAACCCCAACAAGAATGAC
GACTACTTCCCCCAGTTCCGGTCGTTCGACTGGTTCTGCGGCCACAGCTG
GGCGAGGGGCCTGTTGTTCGCCTATGACGGGAAGGATCAGAATGACGACT
ACTTCCCCCAGTTCCGGTCGTTCGACTGGTTCTGCGGCCACAGCTGGGCG
AGGGGCCTGTTGTTCGCCTATGACGGGAAGGATCAGGAATCCACCTCGGA
GGACGTGAATTTCTCGTACGCCCTGACTATGTGGGCAATGGAATCCACCT
CGGAGGACGTGAATTTCTCGTACGCCCTGACTATGTGGGCAATG
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