mRNA_F-serratus_M_contig95.20858.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI) HSP 1 Score: 167 bits (424), Expect = 2.000e-45 Identity = 98/148 (66.22%), Postives = 117/148 (79.05%), Query Frame = 1 Query: 1 TDSSGGLQGXXXXXXXXXXXXXXVINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWFGPSSNVSEAY------GVDFASQCAVINSDWPESAACCPDW 426 T+ SG L+ XXXXXXXXXXXXXX+INRAPGLK+VLNALFAAIPDVLNVAAVCFM F+IFAILGV YFKGI+MSCQG+ FDALPE++ +++ PT+W MS Q++WFGP SNVS A+ G AS C IN+ WP+S CC +W Sbjct: 985 TNDSGNLEXXXXXXXXXXXXXXXMINRAPGLKIVLNALFAAIPDVLNVAAVCFMFFIIFAILGVNYFKGILMSCQGEEFDALPESIALFIQEPTSWDAMSADQQSWFGPLSNVSAAFSMNGTGGFTTASACGSINAGWPDSGGCCTEW 1132
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: A0A6H5JIB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB7_9PHAE) HSP 1 Score: 166 bits (419), Expect = 9.290e-45 Identity = 97/148 (65.54%), Postives = 117/148 (79.05%), Query Frame = 1 Query: 1 TDSSGGLQGXXXXXXXXXXXXXXVINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWFGPSSNVSEAYGVD------FASQCAVINSDWPESAACCPDW 426 T+ SG L XXXXXXXXXXXXXX+INRAPGLK+VLNALFAAIPDVLNVAAVCFM F+IFAILGV YFKGI+MSCQG+ FDALPE+V ++E PT+W MS Q++WFGP SN+S A+ ++ AS C I++ WP+S CC +W Sbjct: 487 TNDSGNLXXXXXXXXXXXXXXXXMINRAPGLKIVLNALFAAIPDVLNVAAVCFMFFIIFAILGVNYFKGILMSCQGEEFDALPESVALFIEEPTSWDAMSADQQSWFGPLSNISAAFSINGTGGFTTASACGSISAGWPDSGGCCTEW 634
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI) HSP 1 Score: 142 bits (358), Expect = 1.520e-36 Identity = 92/151 (60.93%), Postives = 108/151 (71.52%), Query Frame = 1 Query: 16 GLQGXXXXXXXXXXXXXXVINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWFGPSSNVSEAYGVD-FASQ------------CAVINSD-WPESAACCPDW 426 GL GXXXXXXXXXXXXXX++ R PGLK+VL AL ++ V NVAAVCF+ ++IFAIL V YFKG++MSCQGDAFDALP VVS++E P WSEMS GQR WFGP SNVSEA+ D F+S C VI WP++AACC W Sbjct: 728 GLSGXXXXXXXXXXXXXXIVKRFPGLKIVLEALIGSVQGVFNVAAVCFLFYIIFAILCVNYFKGLLMSCQGDAFDALPGEVVSFLEDPLPWSEMSSGQREWFGPLSNVSEAFSGDGFSSSIGGNLSTSRVEYCDVITGGLWPDAAACCSAW 878
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE) HSP 1 Score: 140 bits (352), Expect = 9.810e-36 Identity = 74/133 (55.64%), Postives = 90/133 (67.67%), Query Frame = 1 Query: 70 VINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWFGPSSNVSEAYGVD-FASQ------------CAVINSD-WPESAACCPDW 426 ++ R PGLKLVL AL ++ V NVAAVCF+ ++IFAIL V YFKG++MSCQGDAFDALP VVS++E P WS+MS GQR WFGP SNVSEA+ D F+S C VI WP++A CC W Sbjct: 1225 IVKRFPGLKLVLEALIGSVQGVFNVAAVCFLFYIIFAILCVNYFKGLLMSCQGDAFDALPGEVVSFLEDPLPWSDMSSGQREWFGPLSNVSEAFSGDGFSSSIGGNLSTSGVEYCDVITGGLWPDAAGCCSAW 1357
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: A0A421FNC7_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FNC7_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 3.300e-21 Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 1 Query: 70 VINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWFGPSSNVSEAYG-VDFASQ--CAVINSDW 396 +I+R PGLKLV+NALF AIP+VLNV VC + FLIF+I+ V Y KG +C GD FDAL +A V ++ SPT W+ ++ QR+WF +S + + SQ C +DW Sbjct: 273 MISRRPGLKLVVNALFEAIPEVLNVLFVCMLFFLIFSIVAVNYLKGTFNACSGDVFDALSDAQVDFLVSPTKWATLNDFQRSWFANTSCAGFSNDTISMTSQYVCGCWGADW 384
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: A0A662YH95_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YH95_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 7.600e-20 Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 1 Query: 70 VINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWFGPSSNVSEAYGVD-FASQ--CAVINSDW 396 +I+R PGLKLV+NALF AIP VLNV +C ++FLIF+I+ V Y KG C GD FDAL +++ +PTAW +S QR+WF + E + D SQ C +DW Sbjct: 946 MISRRPGLKLVVNALFEAIPQVLNVLFLCMLLFLIFSIIAVNYLKGTFYLCSGDVFDALSPEQETFLVAPTAWDSLSEMQRSWFA--NTTCEGFPTDSLTSQYVCGCWQADW 1055
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: K3WQ22_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ22_GLOUD) HSP 1 Score: 94.4 bits (233), Expect = 9.530e-20 Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 1 Query: 70 VINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWFGPSSNVSEAYGVDFASQCAVINS 390 +INR PGLKLV+++L A+IP +LNV VC +VF IF+IL V KG + SCQGD FDAL EA + + P WS ++ G++ WF SS + AY DF+S + S Sbjct: 146 MINRNPGLKLVVSSLIASIPQILNVIVVCLLVFTIFSILAVNNLKGKLYSCQGDVFDALSEAQLGLVAYPRLWSNLTDGEQTWFNASSAI--AY-KDFSSTIDQVTS 249
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: A0A0P1B727_PLAHL (Voltage-gated ion channel superfamily n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B727_PLAHL) HSP 1 Score: 93.6 bits (231), Expect = 1.930e-19 Identity = 51/114 (44.74%), Postives = 71/114 (62.28%), Query Frame = 1 Query: 70 VINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWFGPS---SNVSEAYGVDFASQ--CAVINSDW 396 +I+R PGLKLV+NALF AIP+V+NV VC + FLIF+I+ V Y KG +C GD FDAL EA +S++ +P AW S +R+WF + + G D S+ C ++W Sbjct: 1039 MISRRPGLKLVVNALFEAIPEVINVLFVCMLFFLIFSIVAVNYLKGTFNACSGDVFDALSEAQLSFLVTPKAWKVSSDLERSWFHGTDCQATFPLTIGADLTSEYVCKCWGANW 1152
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: W2QUR8_PHYPN (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2QUR8_PHYPN) HSP 1 Score: 93.2 bits (230), Expect = 2.630e-19 Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = 1 Query: 70 VINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWF-GPSSNVS--EAYGVDFASQ--CAVINSDW 396 +I+R PGLKLV+NALF AIP+V+NV VC + FLIF+I+ V Y KG +C GD F+A +A +S++ SP AW + S QR+WF G S G D S+ C ++W Sbjct: 1041 MISRRPGLKLVVNALFEAIPEVINVLFVCMLFFLIFSIVAVNYLKGTFSACSGDVFNAFSDAQLSFLVSPIAWKDSSALQRSWFVGTPCETSFRTTTGSDLTSEYVCECWGAEW 1154
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: A0A6A3MSW9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3MSW9_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 3.520e-19 Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1 Query: 70 VINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWF 321 +INR PGLKLV+NALF +IP+V+NV VC + FLIF+I+ V Y KG SC GD F L A V+++ +PT WS S QR+WF Sbjct: 579 MINRRPGLKLVVNALFESIPEVINVLFVCMLFFLIFSIVAVNYLKGTFSSCSGDVFSTLSGAQVNFLVAPTTWSASSELQRSWF 662 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig95.20858.1 >prot_F-serratus_M_contig95.20858.1 ID=prot_F-serratus_M_contig95.20858.1|Name=mRNA_F-serratus_M_contig95.20858.1|organism=Fucus serratus male|type=polypeptide|length=142bp TDSSGGLQGLKSLRALRALRPLRVINRAPGLKLVLNALFAAIPDVLNVAAback to top mRNA from alignment at F-serratus_M_contig95:741591..742555- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig95.20858.1 ID=mRNA_F-serratus_M_contig95.20858.1|Name=mRNA_F-serratus_M_contig95.20858.1|organism=Fucus serratus male|type=mRNA|length=965bp|location=Sequence derived from alignment at F-serratus_M_contig95:741591..742555- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig95:741591..742555- >mRNA_F-serratus_M_contig95.20858.1 ID=mRNA_F-serratus_M_contig95.20858.1|Name=mRNA_F-serratus_M_contig95.20858.1|organism=Fucus serratus male|type=CDS|length=852bp|location=Sequence derived from alignment at F-serratus_M_contig95:741591..742555- (Fucus serratus male)back to top |