mRNA_F-serratus_M_contig943.20797.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig943.20797.1
Unique NamemRNA_F-serratus_M_contig943.20797.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig943.20797.1 vs. uniprot
Match: D8LFQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ8_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 9.220e-46
Identity = 104/220 (47.27%), Postives = 138/220 (62.73%), Query Frame = 3 
Query:  432 LTVPLNINGLETVLEIYWGSSPDDLAADFCRREEFGFYGPRFDSCFYQIAQIVRRAILIQGVRQGGENIEQGEVKPFTINIPVTLAGRKLHVEFRTSETPRESALRFCVANLLAIESALGIELGDGNEYSQAVGYGGMGETVYGF---EERDTLKDVCVTIVEDAINAVLLGLRKRVAEAEMALANATKTMTD*WHVSTGGRPE*SRFGANSTERAKWFA 1082
            +TVPLN+NG+ETVL+I+  S+  DLA+DFCRREEFG  G   +SC  Q+  IV RA+     RQ  ++ E  E  PFT  +PVTLAG +LH EF+T+ETPR SA RFC  NL  IESALG++  +G +     G G    T  GF   E R +L++ C  +VEDAINAVLLG+R+RV EAE+  AN+T + +  +  S+ G P+        + R  W A
Sbjct:  168 MTVPLNVNGVETVLQIFRDSNAKDLASDFCRREEFGLEGSFLESCSSQMVDIVHRAVATYE-RQDDQSGEPPERTPFTFKVPVTLAGLQLHAEFKTTETPRTSARRFCTPNLPVIESALGLDAYEGEDE----GRGEEESTGVGFFLSEGRKSLREACTVVVEDAINAVLLGMRERVLEAELTQANSTYSSS--YDDSSDGWPQ------EGSARGAWAA 374
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BLAST of mRNA_F-serratus_M_contig943.20797.1 vs. uniprot
Match: A0A6H5KRC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC8_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 8.730e-43
Identity = 90/177 (50.85%), Postives = 116/177 (65.54%), Query Frame = 3 
Query:  432 LTVPLNINGLETVLEIYWGSSPDDLAADFCRREEFGFYGPRFDSCFYQIAQIVRRAILIQGVRQGGENIEQGEVKPFTINIPVTLAGRKLHVEFRTSETPRESALRFCVANLLAIESALGI----ELGDGNEYSQAVGYGGMGETVYGFEERDTLKDVCVTIVEDAINAVLLGLRKR 950
            +TVPLN+NG+ETVL+I+ GS+  +LA+DFCRR EF   G   +SC  Q+  IV RA+     RQ  +N E  E  PFT  +PVTLAG +LH EF+T+ETPR SA RFC  NL  IESALGI    E G+G +   + G G      +  E R +L++ C  +VEDAINAVLLG+R+R
Sbjct:    1 MTVPLNVNGVETVLQIFRGSNAKELASDFCRRAEFRLEGSFLESCCSQMVDIVHRAVATYE-RQDDQNGEPPEQTPFTFKVPVTLAGLQLHAEFKTTETPRTSARRFCTPNLPVIESALGIDAFEEAGEGRDEEGSTGVG-----FFMSEGRKSLREACTVVVEDAINAVLLGMRER 171
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig943.20797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFQ8_ECTSI9.220e-4647.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRC8_9PHAE8.730e-4350.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig943contigF-serratus_M_contig943:171765..175410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1952
Cds size993
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932700.853691-UTR-F-serratus_M_contig943:171764..1717751622932700.853691-UTR-F-serratus_M_contig943:171764..171775Fucus serratus maleUTRF-serratus_M_contig943 171765..171775 +
1690964430.0083408-UTR-F-serratus_M_contig943:171764..1717751690964430.0083408-UTR-F-serratus_M_contig943:171764..171775Fucus serratus maleUTRF-serratus_M_contig943 171765..171775 +
1622932701.011893-UTR-F-serratus_M_contig943:174462..1754101622932701.011893-UTR-F-serratus_M_contig943:174462..175410Fucus serratus maleUTRF-serratus_M_contig943 174463..175410 +
1690964430.0834355-UTR-F-serratus_M_contig943:174462..1754101690964430.0834355-UTR-F-serratus_M_contig943:174462..175410Fucus serratus maleUTRF-serratus_M_contig943 174463..175410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932700.9350662-CDS-F-serratus_M_contig943:171775..1719971622932700.9350662-CDS-F-serratus_M_contig943:171775..171997Fucus serratus maleCDSF-serratus_M_contig943 171776..171997 +
1690964430.0199068-CDS-F-serratus_M_contig943:171775..1719971690964430.0199068-CDS-F-serratus_M_contig943:171775..171997Fucus serratus maleCDSF-serratus_M_contig943 171776..171997 +
1622932700.9532347-CDS-F-serratus_M_contig943:172303..1726451622932700.9532347-CDS-F-serratus_M_contig943:172303..172645Fucus serratus maleCDSF-serratus_M_contig943 172304..172645 +
1690964430.0302649-CDS-F-serratus_M_contig943:172303..1726451690964430.0302649-CDS-F-serratus_M_contig943:172303..172645Fucus serratus maleCDSF-serratus_M_contig943 172304..172645 +
1622932700.9676886-CDS-F-serratus_M_contig943:173073..1732141622932700.9676886-CDS-F-serratus_M_contig943:173073..173214Fucus serratus maleCDSF-serratus_M_contig943 173074..173214 +
1690964430.0412369-CDS-F-serratus_M_contig943:173073..1732141690964430.0412369-CDS-F-serratus_M_contig943:173073..173214Fucus serratus maleCDSF-serratus_M_contig943 173074..173214 +
1622932700.9817765-CDS-F-serratus_M_contig943:173524..1737581622932700.9817765-CDS-F-serratus_M_contig943:173524..173758Fucus serratus maleCDSF-serratus_M_contig943 173525..173758 +
1690964430.0590055-CDS-F-serratus_M_contig943:173524..1737581690964430.0590055-CDS-F-serratus_M_contig943:173524..173758Fucus serratus maleCDSF-serratus_M_contig943 173525..173758 +
1622932700.9982824-CDS-F-serratus_M_contig943:174408..1744621622932700.9982824-CDS-F-serratus_M_contig943:174408..174462Fucus serratus maleCDSF-serratus_M_contig943 174409..174462 +
1690964430.074818-CDS-F-serratus_M_contig943:174408..1744621690964430.074818-CDS-F-serratus_M_contig943:174408..174462Fucus serratus maleCDSF-serratus_M_contig943 174409..174462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig943.20797.1prot_F-serratus_M_contig943.20797.1Fucus serratus malepolypeptideF-serratus_M_contig943 171776..174462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig943.20797.1

>prot_F-serratus_M_contig943.20797.1 ID=prot_F-serratus_M_contig943.20797.1|Name=mRNA_F-serratus_M_contig943.20797.1|organism=Fucus serratus male|type=polypeptide|length=331bp
MDQSSMASEDMNISMDQNSMVSEYVDTSMDQASMAREDVDTSVDQSSLAD
SPIVTLDVSLDGMEARTVNYYAGQDPMEVAAIFCAENLGLSSPAEAFARC
SNSLSASIIEWIRDPLDAPSGHESTFKQQDRLRTKTVEPWLTVPLNINGL
ETVLEIYWGSSPDDLAADFCRREEFGFYGPRFDSCFYQIAQIVRRAILIQ
GVRQGGENIEQGEVKPFTINIPVTLAGRKLHVEFRTSETPRESALRFCVA
NLLAIESALGIELGDGNEYSQAVGYGGMGETVYGFEERDTLKDVCVTIVE
DAINAVLLGLRKRVAEAEMALANATKTMTD*
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mRNA from alignment at F-serratus_M_contig943:171765..175410+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig943.20797.1 ID=mRNA_F-serratus_M_contig943.20797.1|Name=mRNA_F-serratus_M_contig943.20797.1|organism=Fucus serratus male|type=mRNA|length=3646bp|location=Sequence derived from alignment at F-serratus_M_contig943:171765..175410+ (Fucus serratus male)
TGGACACCTCCATGGATCAATCTTCGATGGCGAGTGAAGATATGAACATC
TCCATGGATCAAAATTCAATGGTGAGTGAATATGTGGACACCTCCATGGA
TCAAGCTTCAATGGCGAGGGAAGATGTGGACACCTCCGTGGATCAATCTT
CACTGGCAGACAGTCCCATCGTTACTCTGGATGTCTCTCTCGATGGCATG
GAAGCCCGCACGGTCAACTACTACGCCGGCCAGGTAGCTGCACATCGAAT
CTCTTGCCCGACATACAACGTGGCCAGACCTTTTTGGAACGGGGGTGGTA
TTGATATTCAGCGTCCAGATCATCAGCGCTCTGTCTGTTTGTCCTCGAAC
AATACCGCCAGACAATGCCACTGAAATTCATAACCCGCAACGTCAATCTG
ATATCTGGTTCAAGATGTGACTTCGGGATGAAACTGGCTCCAGGGTTCAC
CACTTGCACGCACTTGATCTATTAATACTATCAGTTTATTGTTGCCACCA
ATCACGTTGCGTAATTATTATTTATGCTTCATGTTACAGGATCCTATGGA
GGTAGCCGCTATTTTCTGCGCTGAGAATCTCGGCTTGTCTAGCCCTGCGG
AGGCCTTCGCACGTTGCTCGAATAGCCTTTCGGCAAGCATCATTGAATGG
ATAAGAGACCCCCTCGATGCCCCTTCTGGGCACGAATCAACGTTCAAGCA
GCAAGATAGATTGCGCACCAAGACCGTGGAACCATGGCTCACGGTTCCGC
TGAACATCAACGGATTGGAGACGGTGCTGGAGATTTATTGGGGGTCCTCG
CCAGACGATCTGGCGGCTGATTTTTGTCGCCGAGAGGAGTTCGGTTTCTA
TGGACCACGATTCGACAGCTGCTTTTATCAGGCTGGTATTCCGCTTGACT
GGTTGTCGTCAAGCGGCCTCTCCCTCGGCGCACTGCCACTACTTTTCGCC
CCCCCCCCCCCCGACCATGCATATGATCATTGCGCTTGTTAAAGGATCCT
GCAAGTCTGCAAGACTAAGTCAATTCTCGCTCCTACATACTGTAGTACAT
ATTACGAGTAGGAAATAAACAAATAGTACATCCCAGCGTGCGGTGAAAAC
CGACCGTCAATAGTTCCAAGTGCCGCGATAATTTGGTTAACCTGGGTGGA
TAATTATAAGTTTCGCTTCCTTGTAGAGGGAAGGTCTACGCAGTCACTTG
CTCGCTTGCACTTTGGCCTCGAGAGCGTAGAAATAACGCCTGAGCATACT
GATGCCACCTCCTTGACCCGTTATGCAAAAATTCTGCCAAATACTTCTGC
GCGCACTAGATTGCGCAAATCGTACGCCGCGCGATATTGATCCAAGGGGT
GCGTCAGGGGGGAGAAAATATCGAGCAGGGGGAAGTAAAACCCTTTACTA
TTAATATACCTGTCACCCTGGCAGGCCGCAAGCTCCACGTCGAATTCAGG
GTGAGTATATATGTTTCGCTGTGTTCATTCGCAGAAAAAAACGGAGAGCA
ACTCGTGAGGCTGTATACCTTTGCGCTGATCGACCCGCATATGCACCACA
AGCTTCCTTGATTGAGTACCGTATTGCGTATTTTCGTGCTTCTATATCGT
CAGAGGGGTGCTTCGAGGTTAAGGATCGCGTGGTCATCGTGTTTTGCGCG
CTTGTTAGGCATCCAGCAAAAGGCGATAGCCGACTCGCGTCTCAGGGATG
CCTCGCGTTCATCCAAAACCTTCGCTCGTCTCAACACCTTCCTCTTCTGC
AAACGATCAGACCAGCGAGACTCCTCGAGAGTCCGCCCTGCGATTTTGCG
TCGCTAATCTCCTGGCGATAGAATCCGCCCTGGGTATCGAACTCGGTGAC
GGCAACGAATACAGTCAAGCCGTGGGATATGGCGGCATGGGAGAAACAGT
GTACGGCTTTGAAGAAAGAGACACGCTGAAGGATGTGTGCGTGACGATCG
TGGAAGACGCGATCAACGCGGTGCTCTTGGGCCTAAGAAAGAGGGTAAGA
AGCTTGCTTGGGATGATATAAATCACGTGACGATATAGAAACAGACCCAA
ACAAACCTACCGGTTGAAGGGGATATGGTGAACATTATTAAATCCACCCT
CTAGGGGGGAAATTATGATACCCCCAGGCTCTTTGCTATTGTAATTAACA
TACAGTATATATAGAACGGACCTTGGGTTAGGGTTAGGGTTAAGGTTAGG
GTTAGGTTCTATATAATATATGTTAATTACAACAGCAAAGGGCCTGGGGG
TATCCTGATTTCCCACCTTGAGGGTGAAAATAATTTTGCCGGATATGGTA
TCCTTTTGAACCAAGTATTTATGGGTTCGAAATTATCGATCGCTTGACGC
AAAAAATATCCATTTATATTTTCTACTTCATAGCTTTACGTGTGATACGT
ATTGACCACCGTAAACGTTGCCTGGAAAAAAGAAAATAAAAACACAAAGA
ACATCCACACTGTCACGGTTGGGCGGGCCCTGAAGATCCCTAAAGATATC
TCCCGCGAGGACAACAACAACAACAACAGCCGGTGCAACGCGACAGATTC
GCGTGTACCAATTGAACCAACGATCGGACGCCGTGTTTTGGTGTATAAAA
CTTTAACCGCGGCAACCTCTGCATACCCTCTCTGATGATGCAAGGTTGCG
GAAGCGGAGATGGCTCTTGCGAATGCCACCAAAACCATGACCGACTAATG
GCACGTATCAACAGGAGGAAGGCCAGAATGATCGCGTTTTGGCGCAAACA
GCACAGAGCGTGCCAAATGGTTTGCCGTGACAGCACCAACATCGCAGCTC
TTAGATATAGCTAGAGATGCAGATGCCAATGAGTGGGTATAACCAACATA
ATTAAGTCTTAGAGTGCTTTGTGCCTGGGCTAGAGTTTTACGGTGTTTTT
TTATATTCTGTGTCGTGCTCGGTCACGCATTCACAGGAAGGACGGCTGAC
ATCACACGTGTTTTCCTGTCATTGGTTGTCTGCTTGTTTTTTATGACCCT
TCAGCAACCGTCGTCCCGGTCCTTTCTGAGTGAAGTTCACGAATAACGCT
CGTTCTCGCCGTAGTGCTCCCGAGTGCAACTAGGATTCACGCGGTAGTCG
GAAGCCGCACACTTGCTGTCGCTAAGATAACATGTTCTAAGAGCTGCGAC
TGACTATGAAAAAAAAGTGAATGCGGGAAGTCGAGAACTTGACATGACAT
GTAATAGCACATATGGTACCGGCACTGCAGGTTCCAGAACTTGCGAGAAT
CCATAACTCAGCATGAAGAAAAGGCTACTACACTAGAAAAAAAGATGACA
CACGAGTTGTGCTACGTCGTTTGATATCGGGTGTGCACTTTGACATGTAG
GCAGCCTGTTCACGTTGCATCGCCCGAGAGAAAAGAGTCACAGAAACGCA
ACAACGGACGGGTTTAGAAGTACTATTGATAATATTATAGTGCGGCGAAA
ACACGTTGGCAACACCAGGCCATTCATGTGATGATGTTTTGGTGATGATT
TTGTGAAAATGCAAATTTGATGATTGTCAAGGGGCGAAGACTTTATTTAC
TGATTTGAAAGTTCGAATGTTTCCTGGGATGTTATCGGTGACACGTGTGC
GACCTGAAGCGCTCGTGTGATCACGGACTACCACCGCAATGCAAGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig943:171765..175410+

>mRNA_F-serratus_M_contig943.20797.1 ID=mRNA_F-serratus_M_contig943.20797.1|Name=mRNA_F-serratus_M_contig943.20797.1|organism=Fucus serratus male|type=CDS|length=1986bp|location=Sequence derived from alignment at F-serratus_M_contig943:171765..175410+ (Fucus serratus male)
ATGGATCAATCTTCGATGGCGAGTGAAGATATGAACATCTCCATGGATCA
AAATTCAATGGTGAGTGAATATGTGGACACCTCCATGGATCAAGCTTCAA
TGGCGAGGGAAGATGTGGACACCTCCGTGGATCAATCTTCACTGGCAGAC
AGTCCCATCGTTACTCTGGATGTCTCTCTCGATGGCATGGAAGCCCGCAC
GGTCAACTACTACGCCGGCCAGATGGATCAATCTTCGATGGCGAGTGAAG
ATATGAACATCTCCATGGATCAAAATTCAATGGTGAGTGAATATGTGGAC
ACCTCCATGGATCAAGCTTCAATGGCGAGGGAAGATGTGGACACCTCCGT
GGATCAATCTTCACTGGCAGACAGTCCCATCGTTACTCTGGATGTCTCTC
TCGATGGCATGGAAGCCCGCACGGTCAACTACTACGCCGGCCAGGATCCT
ATGGAGGTAGCCGCTATTTTCTGCGCTGAGAATCTCGGCTTGTCTAGCCC
TGCGGAGGCCTTCGCACGTTGCTCGAATAGCCTTTCGGCAAGCATCATTG
AATGGATAAGAGACCCCCTCGATGCCCCTTCTGGGCACGAATCAACGTTC
AAGCAGCAAGATAGATTGCGCACCAAGACCGTGGAACCATGGCTCACGGT
TCCGCTGAACATCAACGGATTGGAGACGGTGCTGGAGATTTATTGGGGGT
CCTCGCCAGACGATCTGGCGGCTGATTTTTGTCGCCGAGAGGAGTTCGGT
TTCTATGGACCACGATTCGACAGCTGCTTTTATCAGGATCCTATGGAGGT
AGCCGCTATTTTCTGCGCTGAGAATCTCGGCTTGTCTAGCCCTGCGGAGG
CCTTCGCACGTTGCTCGAATAGCCTTTCGGCAAGCATCATTGAATGGATA
AGAGACCCCCTCGATGCCCCTTCTGGGCACGAATCAACGTTCAAGCAGCA
AGATAGATTGCGCACCAAGACCGTGGAACCATGGCTCACGGTTCCGCTGA
ACATCAACGGATTGGAGACGGTGCTGGAGATTTATTGGGGGTCCTCGCCA
GACGATCTGGCGGCTGATTTTTGTCGCCGAGAGGAGTTCGGTTTCTATGG
ACCACGATTCGACAGCTGCTTTTATCAGATTGCGCAAATCGTACGCCGCG
CGATATTGATCCAAGGGGTGCGTCAGGGGGGAGAAAATATCGAGCAGGGG
GAAGTAAAACCCTTTACTATTAATATACCTGTCACCCTGGCAGGCCGCAA
GCTCCACGTCGAATTCAGGATTGCGCAAATCGTACGCCGCGCGATATTGA
TCCAAGGGGTGCGTCAGGGGGGAGAAAATATCGAGCAGGGGGAAGTAAAA
CCCTTTACTATTAATATACCTGTCACCCTGGCAGGCCGCAAGCTCCACGT
CGAATTCAGGACCAGCGAGACTCCTCGAGAGTCCGCCCTGCGATTTTGCG
TCGCTAATCTCCTGGCGATAGAATCCGCCCTGGGTATCGAACTCGGTGAC
GGCAACGAATACAGTCAAGCCGTGGGATATGGCGGCATGGGAGAAACAGT
GTACGGCTTTGAAGAAAGAGACACGCTGAAGGATGTGTGCGTGACGATCG
TGGAAGACGCGATCAACGCGGTGCTCTTGGGCCTAAGAAAGAGGACCAGC
GAGACTCCTCGAGAGTCCGCCCTGCGATTTTGCGTCGCTAATCTCCTGGC
GATAGAATCCGCCCTGGGTATCGAACTCGGTGACGGCAACGAATACAGTC
AAGCCGTGGGATATGGCGGCATGGGAGAAACAGTGTACGGCTTTGAAGAA
AGAGACACGCTGAAGGATGTGTGCGTGACGATCGTGGAAGACGCGATCAA
CGCGGTGCTCTTGGGCCTAAGAAAGAGGGTTGCGGAAGCGGAGATGGCTC
TTGCGAATGCCACCAAAACCATGACCGACTAAGTTGCGGAAGCGGAGATG
GCTCTTGCGAATGCCACCAAAACCATGACCGACTAA
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