mRNA_F-serratus_M_contig1010.205.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1010.205.1
Unique NamemRNA_F-serratus_M_contig1010.205.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1010.205.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 6.250e-24
Identity = 48/70 (68.57%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 VPIAPFETSWSTTGDDRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRL 210
            VPI+P +T+W     D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL
Sbjct:  169 VPISPVDTTWQ----DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRL 234
[Close]
BLAST of mRNA_F-serratus_M_contig1010.205.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 4.270e-23
Identity = 48/70 (68.57%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 VPIAPFETSWSTTGDDRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRL 210
            VPI+P +T+W     D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL
Sbjct:  343 VPISPVDTTWQ----DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRL 408
[Close]
BLAST of mRNA_F-serratus_M_contig1010.205.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 4.700e-23
Identity = 48/70 (68.57%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 VPIAPFETSWSTTGDDRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRL 210
            VPI+P +T+W     D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL
Sbjct:   60 VPISPVDTTWQ----DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRL 125
[Close]
BLAST of mRNA_F-serratus_M_contig1010.205.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 6.620e-23
Identity = 48/70 (68.57%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 VPIAPFETSWSTTGDDRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRL 210
            VPI+P +T+W     D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL
Sbjct: 1474 VPISPVDTTWQ----DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRL 1539
[Close]
BLAST of mRNA_F-serratus_M_contig1010.205.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 8.150e-23
Identity = 45/61 (73.77%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:   28 WSTTGDDRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRL 210
            WST   D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL
Sbjct:   67 WSTGRKDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRL 127
[Close]
BLAST of mRNA_F-serratus_M_contig1010.205.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.820e-22
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:   40 GDDRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRL 210
            G+D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL
Sbjct:    7 GEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRL 63
[Close]
BLAST of mRNA_F-serratus_M_contig1010.205.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.100e-22
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:   37 TGDDRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRL 210
            +G+D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL
Sbjct:    4 SGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRL 61
[Close]
BLAST of mRNA_F-serratus_M_contig1010.205.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 6.360e-22
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:   37 TGDDRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRL 210
            +G+D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL
Sbjct:    4 SGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRL 61
[Close]
BLAST of mRNA_F-serratus_M_contig1010.205.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 6.280e-21
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:   37 TGDDRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRL 210
            +G+D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL
Sbjct:    4 SGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRL 61
[Close]
BLAST of mRNA_F-serratus_M_contig1010.205.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.610e-20
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   46 DRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRL 210
            D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL
Sbjct:    4 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRL 58
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1010.205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS2_9PHAE6.250e-2468.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG8_9PHAE4.270e-2368.57Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE4.700e-2368.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L976_9PHAE6.620e-2368.57ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6H5JMH2_9PHAE8.150e-2373.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSF1_9PHAE1.820e-2275.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFN2_9PHAE3.100e-2274.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE6.360e-2274.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN08_9PHAE6.280e-2174.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K214_9PHAE2.610e-2076.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1010contigF-serratus_M_contig1010:13029..13247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score80.9
Seed ortholog evalue2.8e-13
Seed eggNOG ortholog400682.PAC_15699109
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Helicase
EggNOG OGs39K8F@33154,3C3GY@33208,COG0507@1,KOG0987@2759
COG Functional cat.D
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928808.5722032-CDS-F-serratus_M_contig1010:13028..132471622928808.5722032-CDS-F-serratus_M_contig1010:13028..13247Fucus serratus maleCDSF-serratus_M_contig1010 13029..13247 -
1690962581.8156672-CDS-F-serratus_M_contig1010:13028..132471690962581.8156672-CDS-F-serratus_M_contig1010:13028..13247Fucus serratus maleCDSF-serratus_M_contig1010 13029..13247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1010.205.1prot_F-serratus_M_contig1010.205.1Fucus serratus malepolypeptideF-serratus_M_contig1010 13029..13247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1010.205.1

>prot_F-serratus_M_contig1010.205.1 ID=prot_F-serratus_M_contig1010.205.1|Name=mRNA_F-serratus_M_contig1010.205.1|organism=Fucus serratus male|type=polypeptide|length=73bp
VPIAPFETSWSTTGDDRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDL
GRSEATAGLTFVCLSRAKRLRGV
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mRNA from alignment at F-serratus_M_contig1010:13029..13247-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1010.205.1 ID=mRNA_F-serratus_M_contig1010.205.1|Name=mRNA_F-serratus_M_contig1010.205.1|organism=Fucus serratus male|type=mRNA|length=219bp|location=Sequence derived from alignment at F-serratus_M_contig1010:13029..13247- (Fucus serratus male)
GTACCCATCGCGCCCTTTGAGACGTCCTGGAGTACAACGGGTGACGATAG
AGGATGTGAGACACGTCGCCAATTACCCCTGGCTCTTTGTTGGTCTATAA
CAATGCACAAGAGCCAAGGGCAGACGTTGGACAAGGCCGTTGTCGACCTC
GGACGGTCAGAGGCTACAGCGGGATTGACGTTCGTGTGTCTTAGCCGCGC
AAAGCGCCTAAGGGGCGTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1010:13029..13247-

>mRNA_F-serratus_M_contig1010.205.1 ID=mRNA_F-serratus_M_contig1010.205.1|Name=mRNA_F-serratus_M_contig1010.205.1|organism=Fucus serratus male|type=CDS|length=438bp|location=Sequence derived from alignment at F-serratus_M_contig1010:13029..13247- (Fucus serratus male)
GTACCCATCGCGCCCTTTGAGACGTCCTGGAGTACAACGGGTGACGATAG
AGGATGTGAGACACGTCGCCAATTACCCCTGGCTCTTTGTTGGTCTATAA
CAATGCACAAGAGCCAAGGGCAGACGTTGGACAAGGCCGTTGTCGACCTC
GGACGGTCAGAGGCTACAGCGGGATTGACGTTCGTGTGTCTTAGCCGCGC
AAAGCGCCTAAGGGGCGTTGTACCCATCGCGCCCTTTGAGACGTCCTGGA
GTACAACGGGTGACGATAGAGGATGTGAGACACGTCGCCAATTACCCCTG
GCTCTTTGTTGGTCTATAACAATGCACAAGAGCCAAGGGCAGACGTTGGA
CAAGGCCGTTGTCGACCTCGGACGGTCAGAGGCTACAGCGGGATTGACGT
TCGTGTGTCTTAGCCGCGCAAAGCGCCTAAGGGGCGTT
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