mRNA_F-serratus_M_contig927.20664.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig927.20664.1
Unique NamemRNA_F-serratus_M_contig927.20664.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig927.20664.1 vs. uniprot
Match: A0A1V9ZIM0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZIM0_9STRA)

HSP 1 Score: 117 bits (292), Expect = 8.670e-27
Identity = 72/215 (33.49%), Postives = 118/215 (54.88%), Query Frame = 1
Query:  307 PTLGLDFLRASKGTITITYTLGSSGNNFEDEDKDETQEATLVLGQDLGKLGLGAVVWDCGVDLAAFLGRHHHLVADKKVLDLGTGTGIVGLAAAQCGANEVVLTDQPALEPLVRSNIERNS-GC-------TGNRVRFQPLKWDEVDSQLRQLTSPDEPFDVILASDCLYDHAAFPAFRRTLRAVCGSCAVLLMAYKRRLNSREQTFFEQLEVDF 927
            PTLG+++++AS+ ++ +        +NF           +L + Q++ KLG+G VVW+CG  L  F+  H   + +KKVL+LG G+G+VGL         ++LTD   + PLV  N ++ +  C       T  ++  Q LKW +      ++ S  +  D IL SDCLY+  AF  F+ T++++      +L+AYK R ++RE+ FF+QLE  F
Sbjct:   17 PTLGINYIQASQSSVRLV-----DSSNF-----------SLEIDQNI-KLGIGGVVWNCGRALVEFISLHQEFICNKKVLELGCGSGVVGLFCGLYHPLSLMLTDLAEMLPLVLQNTQKAALQCNELMNLTTRQQLIVQELKWGDT-----KIPSNID-CDTILCSDCLYNPEAFEDFKNTIKSLASVSTTVLIAYKERHSNREKKFFKQLEEIF 208          
BLAST of mRNA_F-serratus_M_contig927.20664.1 vs. uniprot
Match: A0A8J2WQI3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WQI3_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.760e-25
Identity = 72/176 (40.91%), Postives = 99/176 (56.25%), Query Frame = 1
Query:  415 QEATLVLGQDLGKLGLGAVVWDCGVDLAAFLGRHHHLVADK----KVLDLGTGTGIVGLAAAQCGANEVVLTDQPALEPLVRSNIERNSGCTGNRVRFQPLKWDEVDSQLRQLTSPDEPFDVILASDCLYDHAAFPAFRRTLRAVCGSCAVLLMAYKRRLNSREQTFFEQLEVDFD 930
            ++ TL L Q + + G+  V+W+ G  L   L R      +     KVL+LGTGTG+VG A    GA EV +TD PA   L R+N+  N G     +R +PL W    + L    +   P+DV++A+DCLYD AA PA  RTL  V  +  V+ +AYKRR+++RE  FF  LE  FD
Sbjct:  116 RKQTLRLAQQMTEGGIAGVLWNAGRALTFMLPRLPEWREEGRFAGKVLELGTGTGLVGTACWLRGAREVAMTDLPAAIELARANVAANVGAAAG-LRVEPLAWG---APLPAALAG--PWDVVVAADCLYDVAALPALLRTLGEVSDARTVVYLAYKRRVDAREAPFFADLENLFD 285          
BLAST of mRNA_F-serratus_M_contig927.20664.1 vs. uniprot
Match: A0A485LHQ5_9STRA (Aste57867_21250 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHQ5_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.650e-25
Identity = 75/214 (35.05%), Postives = 105/214 (49.07%), Query Frame = 1
Query:  307 PTLGLDFLRASKGTITITYTLGSSGNNFEDEDKDETQEATLVLGQDLGKLGLGAVVWDCGVDLAAFLGRHHHLVADKKVLDLGTGTGIVGLAAAQCGANEVVLTDQPALEPL-----VRSNIERNSGCTGNRVRFQPLKWDEVDSQLRQLTSPDEPFDVILASDCLYDHAAFPAFRRTLRAVCGSCAVLLMAYKRRLNSREQTFFEQLEVDFDL 933
            PTLG++F+ AS+  I I                 +  + T+   QDL  LG+G V+W+CG  L A + RH  L+    VL+LG GTG VGLA+A      VVLTD P L PL     +R+  E  +      +      W     +L Q        DV+L SDCLYD   F +FR++L  +    + +L+AYK+R+ +RE      L   FDL
Sbjct:   21 PTLGVNFMEASQKEICIAMHA-------------QKGQLTMTFHQDLA-LGVGGVLWNCGRALIACMMRHPDLIRGHNVLELGCGTGAVGLASALLQPRSVVLTDLPMLLPLATRNTLRTRAEHAAVLASVEIAVHEYTWGTPPPRLPQTR------DVVLCSDCLYDPCVFDSFRQSLLDLTHDESRVLLAYKQRMLARETEVLTSLAKHFDL 214          
BLAST of mRNA_F-serratus_M_contig927.20664.1 vs. uniprot
Match: A0A067CYD4_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CYD4_SAPPC)

HSP 1 Score: 119 bits (297), Expect = 4.750e-25
Identity = 79/250 (31.60%), Postives = 121/250 (48.40%), Query Frame = 1
Query:  307 PTLGLDFLRASKGTITITYTLGSSGNNFEDEDKDETQEATLVLGQDLGKLGLGAVVWDCGVDLAAFLGRHHHLVADKKVLDLGTGTGIVGLAAAQCGANEVVLTDQPALEPLVRSNIERNSGCTGNRVRF---QPLKWDEVDSQLRQLTSPDEPFDVILASDCLYDHAAFPAFRRTLRAVCGSCAVLLMAYKRRLNSREQTFFEQLEVDFDLMKVAESHVNDSRGPLSSSPRATTDMRYSYAALRALREV 1047
            PTLG+++L+AS+ ++ +T  +              +    +VL QD+  +G+G V W+CG  L   + RH   V + +VL+LGTGTG VGLAAA      ++LTD  ++ PL   N +     + +  +    Q L+  E   Q      PD P+D +L +DCLYD   F  F  TL  +      +L+AYK+RL  RE    ++L   FD+      + ND   P +       DM Y     R L+ +
Sbjct:  831 PTLGVNYLQASQASVVVTVPV--------------SPPIEIVLHQDMA-VGVGGVFWNCGRALVQLMCRHPEYVCNCRVLELGTGTGGVGLAAAHLRPATLLLTDLASIVPLTLRNTDAAVAASASVEKLWSKQALRVSEY--QWGTKPPPDGPWDTVLCADCLYDEDVFDDFATTLHDIANPSTAVLLAYKQRLPDREMALLKRLAETFDIAV----YTNDDNLPWNFG----NDMVYVLVLRRRLKAL 1055          
BLAST of mRNA_F-serratus_M_contig927.20664.1 vs. uniprot
Match: A0A671DTM4_RHIFE (SOS Ras/Rho guanine nucleotide exchange factor 2 n=3 Tax=Microchiroptera TaxID=30560 RepID=A0A671DTM4_RHIFE)

HSP 1 Score: 111 bits (278), Expect = 7.880e-25
Identity = 67/198 (33.84%), Postives = 109/198 (55.05%), Query Frame = 1
Query:  409 ETQEATLVLGQDLGKLGLGAVVWDCGVDLAAFL------GRHHHLVADKKVLDLGTGTGIVGLAAAQCGANEVVLTDQPALEPLVRSNIERNSGCTGNRVRFQPLKWDEVDSQLRQLTSPDEPFDVILASDCLYDHAAFPAFRRTLRAVCGSCAVLLMAYKRRLNSR----EQTFFEQLEVDFDLMKVA-ESHVNDSR 969
            E ++ T++  Q  G  G+G VVWD  + L+ +L      G   H+++ + VL+LG+GTG VGL AA  GA +V++TD   L+ L++ NI  N       V+ + LKW E   ++   +SP    D IL +DC+Y   +     +TL+ +CGS   ++  Y++R   +    E+ +FE L++DFD  K+  E H  + R
Sbjct:   21 EKRDGTVLRLQQYGSGGVGCVVWDAAIVLSKYLETPGFSGDGAHVLSQRSVLELGSGTGAVGLMAATLGA-DVIVTDLDELQDLLKMNINMNKHLVTGSVQAKVLKWGE---EIEDFSSPP---DYILMADCIYYEESLEPLLKTLKDLCGSETCIICCYEQRTMGKNPEIEKKYFELLQLDFDFEKIPLEKHDEEYR 211          
BLAST of mRNA_F-serratus_M_contig927.20664.1 vs. uniprot
Match: A0A8C5KWB6_JACJA (Valosin containing protein lysine methyltransferase n=2 Tax=Jaculus jaculus TaxID=51337 RepID=A0A8C5KWB6_JACJA)

HSP 1 Score: 110 bits (276), Expect = 1.510e-24
Identity = 69/198 (34.85%), Postives = 107/198 (54.04%), Query Frame = 1
Query:  409 ETQEATLVLGQDLGKLGLGAVVWDCGVDLAAFL------GRHHHLVADKKVLDLGTGTGIVGLAAAQCGANEVVLTDQPALEPLVRSNIERNSGCTGNRVRFQPLKWDEVDSQLRQLTSPDEPFDVILASDCLYDHAAFPAFRRTLRAVCGSCAVLLMAYKRRLNSR----EQTFFEQLEVDFDLMKVA-ESHVNDSR 969
            E ++ T++  Q  G  G+G VVWD  + L+ +L      G   H ++ + VL+LG GTG VGL AA  GA +VV+TD   L+ L++ NI  N       V+ + LKW E   ++  LTSP    D IL +DC+Y   +     +TL+ + GS   ++  Y++R   +    E+ +FE L++DFD  K+  E H  + R
Sbjct:   21 EKRDGTVLRLQQYGSGGVGCVVWDAAIVLSKYLETPGFSGHGAHALSQRSVLELGAGTGAVGLMAATLGA-DVVVTDLEELQDLLKMNIHMNKHLVTGSVQAKVLKWGE---EIGNLTSPP---DYILMADCIYYEESLEPLLKTLKDISGSETCIICCYEQRTMGKNPEIEKKYFELLQLDFDFEKIPLEKHDEEYR 211          
BLAST of mRNA_F-serratus_M_contig927.20664.1 vs. uniprot
Match: G3I9C6_CRIGR (Uncharacterized protein C14orf138-like n=1 Tax=Cricetulus griseus TaxID=10029 RepID=G3I9C6_CRIGR)

HSP 1 Score: 110 bits (274), Expect = 8.010e-24
Identity = 76/232 (32.76%), Postives = 118/232 (50.86%), Query Frame = 1
Query:  409 ETQEATLVLGQDLGKLGLGAVVWDCGVDLA------AFLGRHHHLVADKKVLDLGTGTGIVGLAAAQCGANEVVLTDQPALEPLVRSNIERNSGCTGNRVRFQPLKWDEVDSQLRQLTSPDEPFDVILASDCLYDHAAFPAFRRTLRAVCGSCAVLLMAYKRRLNSR----EQTFFEQLEVDFDLMKVA-ESHVNDSRGPLSSSPRATTDMRYSYAALRALREVHIILGARR 1071
            E ++ T +  Q  G  G+G VVWD  + L+      AF G   H ++ + VL+LG+GTG VGL AA  GA +VV+TD   L+ L++ NI  N       V+ + LKW E   +L  LTSPD     IL +DC+Y   +     +TL+ + GS   ++  Y++R   +    E+ +FE L++DFD  ++  + H  + R         + D+R  Y   +    V I+L   R
Sbjct:   21 EKRDGTALRLQQYGSGGVGCVVWDAAIVLSKYLETPAFSGDGAHALSRRSVLELGSGTGAVGLMAATLGA-DVVVTDLEELQDLLKMNINMNKHLVTGSVQAKVLKWGE---ELEDLTSPD----YILMADCIYYEESLEPLLKTLKELSGSETCIICCYEQRTMGKNPEIEKKYFELLQLDFDFEEIPLDKHDEEYR---------SEDIRIIYIKKKKSVRVFIVLPTLR 235          
BLAST of mRNA_F-serratus_M_contig927.20664.1 vs. uniprot
Match: A0A5C3QVX2_9AGAR (Protein-lysine N-methyltransferase EFM6 n=1 Tax=Pterula gracilis TaxID=1884261 RepID=A0A5C3QVX2_9AGAR)

HSP 1 Score: 108 bits (271), Expect = 1.200e-23
Identity = 75/222 (33.78%), Postives = 115/222 (51.80%), Query Frame = 1
Query:  319 LDFLRASKGTITITYTLGS---SGNNFEDEDKDETQEA---TLVLGQDLGKLGLGAVVWDCGVDLAAFLGRHHHLVADKK-VLDLGTGTGIVGLAAAQCGANEVVLTDQPALEPLVRSNIERNSGCTGNRVRFQPLKWDEVDSQLRQLTSPDEPFDVILASDCLYDHAAFPAFRRTLRAVCGSCAVLLMAYKRRLNSREQTFFEQLEVDFDLMKVAESHVND 963
            +D  ++S     I   + S     + F   D D T ++   T+ L  D    G G + W  G  L+ ++ RH  LV+ ++ VL+LG+GTG+VGL AAQ GA  V +TDQ  L P++  N+E NS   G+ V+   L W E   +      P  P DVILA+DC+Y   AFP   +TL  +  S   +L  YK+R  + ++ FF  L+  F  +++ +   +D
Sbjct:   18 VDITKSSSSASLIPPQIASIIDQTDQFTFSDSDSTTDSRSVTVRLHVDASP-GCGGIAWPAGRVLSEYIVRHPDLVSGREIVLELGSGTGLVGLVAAQLGAKTVWITDQQVLLPIMNKNVEMNS--LGDNVKVAELNWGEAVPEYL----PTRP-DVILAADCVYFEPAFPLLVQTLSDLSDSRTEILFCYKKRRKA-DKRFFTMLKKKFKYVEIPDEPYSD 230          
BLAST of mRNA_F-serratus_M_contig927.20664.1 vs. uniprot
Match: A0A5D6Y960_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y960_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.460e-23
Identity = 82/253 (32.41%), Postives = 116/253 (45.85%), Query Frame = 1
Query:  229 HWQDIYHTPRESRANNNNIXXXXNGAPTLGLDFLRASKGTITITYTLGSSGNNFEDEDKDETQEATLVLGQDLGKLGLGAVVWDCGVDLAAFLGRHHHLVADKKVLDLGTGTGIVGLAAAQC---GANEVVLTDQPALEPLVRSNIERNSGCTG--------NRVRFQPLKWDEVDSQLRQLTSPDEPFDVILASDCLYDHAAFPAFRRTLRAVCGSCA-------VLLMAYKRRLNSREQTFFEQLEVDFDL 933
            HW  I+ +P  + A            P LG+DF++AS   ++I     SS    E  D D      + + Q+L   G+  VVWDC   L AF  R   L+A K+VL+LG GTG VGLA A     G   +VLTD  A+ PL   N+   + C          N +      W +   Q       D   DV+L SDCLY+ + +     +L A+    A       ++L+AYK+R+  RE+ FFE     FD+
Sbjct:   10 HWTSIFQSPSAASA------PSAAEQPRLGVDFVQASAPEVSIPLVFSSSAA-AEGPDAD-----VVTIRQNLSTFGIAGVVWDCARALVAFGQRQPSLLAHKRVLELGAGTGAVGLALALSVDGGLASLVLTDLEAVVPLTADNVRSTALCHARLRDLLARNALTTLSFCWGDALPQC----VVDATADVVLCSDCLYEPSQYANLLASLLALTNWQADDGTRPVIVLIAYKQRMPVRERAFFESAVAFFDV 246          
BLAST of mRNA_F-serratus_M_contig927.20664.1 vs. uniprot
Match: A0A091III1_CALAN (Protein-lysine methyltransferase METTL21D (Fragment) n=3 Tax=Trochilidae TaxID=9242 RepID=A0A091III1_CALAN)

HSP 1 Score: 106 bits (264), Expect = 2.960e-23
Identity = 65/169 (38.46%), Postives = 91/169 (53.85%), Query Frame = 1
Query:  448 GKLGLGAVVWDCGVDLAAFLGRHHHLVADKKVLDLGTGTGIVGLAAAQCGANEVVLTDQPALEPLVRSNIERNSGCTGNRVRFQPLKWDEVDSQLRQLTSPDEPFDVILASDCLYDHAAFPAFRRTLRAVCGSCAVLLMAYKRRLNSR----EQTFFEQLEVDFDLMKV 942
            G  G+G VVWD  + LA FL      +A + VL+LG GTG VG+ AA  GAN V +TD   L+ L+R NIE N       VR + LKW E       +T    P D IL +DC+Y   +     +TL+ + G    +L  Y++R   +    E+ +FE L+VDF+L K+
Sbjct:    8 GSGGVGCVVWDAALVLAKFLETGACPLARRNVLELGAGTGAVGIMAATLGAN-VTVTDLEELQELLRVNIENNKHLVTGSVRAKVLKWGE------DVTEFQPPPDYILMADCIYYEESLEPLLKTLKDLTGPNTCILCCYEQRTVGKNPEIERKYFELLQVDFELEKI 169          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig927.20664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V9ZIM0_9STRA8.670e-2733.49Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
A0A8J2WQI3_9STRA3.760e-2540.91Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A485LHQ5_9STRA4.650e-2535.05Aste57867_21250 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CYD4_SAPPC4.750e-2531.60Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A671DTM4_RHIFE7.880e-2533.84SOS Ras/Rho guanine nucleotide exchange factor 2 n... [more]
A0A8C5KWB6_JACJA1.510e-2434.85Valosin containing protein lysine methyltransferas... [more]
G3I9C6_CRIGR8.010e-2432.76Uncharacterized protein C14orf138-like n=1 Tax=Cri... [more]
A0A5C3QVX2_9AGAR1.200e-2333.78Protein-lysine N-methyltransferase EFM6 n=1 Tax=Pt... [more]
A0A5D6Y960_9STRA1.460e-2332.41Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A091III1_CALAN2.960e-2338.46Protein-lysine methyltransferase METTL21D (Fragmen... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig927contigF-serratus_M_contig927:189520..192742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue5.1e-22
Seed eggNOG ortholog4787.PITG_20464T0
KEGG koko:K17878,ko:K21804
Hectar predicted targeting categoryother localisation
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG2497@1,KOG2497@2759
EC2.1.1.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko03110
Exons4
Model size1289
Cds size999
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig927.20664.1prot_F-serratus_M_contig927.20664.1Fucus serratus malepolypeptideF-serratus_M_contig927 189729..192661 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932677.8137565-UTR-F-serratus_M_contig927:189519..1897281622932677.8137565-UTR-F-serratus_M_contig927:189519..189728Fucus serratus maleUTRF-serratus_M_contig927 189520..189728 -
1690964417.880035-UTR-F-serratus_M_contig927:189519..1897281690964417.880035-UTR-F-serratus_M_contig927:189519..189728Fucus serratus maleUTRF-serratus_M_contig927 189520..189728 -
1622932677.9060073-UTR-F-serratus_M_contig927:192661..1927421622932677.9060073-UTR-F-serratus_M_contig927:192661..192742Fucus serratus maleUTRF-serratus_M_contig927 192662..192742 -
1690964417.940843-UTR-F-serratus_M_contig927:192661..1927421690964417.940843-UTR-F-serratus_M_contig927:192661..192742Fucus serratus maleUTRF-serratus_M_contig927 192662..192742 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932677.8328204-CDS-F-serratus_M_contig927:189728..1899211622932677.8328204-CDS-F-serratus_M_contig927:189728..189921Fucus serratus maleCDSF-serratus_M_contig927 189729..189921 -
1690964417.8932142-CDS-F-serratus_M_contig927:189728..1899211690964417.8932142-CDS-F-serratus_M_contig927:189728..189921Fucus serratus maleCDSF-serratus_M_contig927 189729..189921 -
1622932677.8579967-CDS-F-serratus_M_contig927:190182..1903591622932677.8579967-CDS-F-serratus_M_contig927:190182..190359Fucus serratus maleCDSF-serratus_M_contig927 190183..190359 -
1690964417.9035122-CDS-F-serratus_M_contig927:190182..1903591690964417.9035122-CDS-F-serratus_M_contig927:190182..190359Fucus serratus maleCDSF-serratus_M_contig927 190183..190359 -
1622932677.8726358-CDS-F-serratus_M_contig927:191131..1913581622932677.8726358-CDS-F-serratus_M_contig927:191131..191358Fucus serratus maleCDSF-serratus_M_contig927 191132..191358 -
1690964417.9218988-CDS-F-serratus_M_contig927:191131..1913581690964417.9218988-CDS-F-serratus_M_contig927:191131..191358Fucus serratus maleCDSF-serratus_M_contig927 191132..191358 -
1622932677.8888595-CDS-F-serratus_M_contig927:192259..1926611622932677.8888595-CDS-F-serratus_M_contig927:192259..192661Fucus serratus maleCDSF-serratus_M_contig927 192260..192661 -
1690964417.9314122-CDS-F-serratus_M_contig927:192259..1926611690964417.9314122-CDS-F-serratus_M_contig927:192259..192661Fucus serratus maleCDSF-serratus_M_contig927 192260..192661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig927.20664.1

>prot_F-serratus_M_contig927.20664.1 ID=prot_F-serratus_M_contig927.20664.1|Name=mRNA_F-serratus_M_contig927.20664.1|organism=Fucus serratus male|type=polypeptide|length=333bp
MVLIVMDMKTPPGPSKGVHSSLNLTPREPRLSLPDDRDNLLGLCGSSISH
WQDIYHTPRESRANNNNINHNHNGAPTLGLDFLRASKGTITITYTLGSSG
NNFEDEDKDETQEATLVLGQDLGKLGLGAVVWDCGVDLAAFLGRHHHLVA
DKKVLDLGTGTGIVGLAAAQCGANEVVLTDQPALEPLVRSNIERNSGCTG
NRVRFQPLKWDEVDSQLRQLTSPDEPFDVILASDCLYDHAAFPAFRRTLR
AVCGSCAVLLMAYKRRLNSREQTFFEQLEVDFDLMKVAESHVNDSRGPLS
SSPRATTDMRYSYAALRALREVHIILGARRGC*
back to top

mRNA from alignment at F-serratus_M_contig927:189520..192742-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig927.20664.1 ID=mRNA_F-serratus_M_contig927.20664.1|Name=mRNA_F-serratus_M_contig927.20664.1|organism=Fucus serratus male|type=mRNA|length=3223bp|location=Sequence derived from alignment at F-serratus_M_contig927:189520..192742- (Fucus serratus male)
TATGATTTTCCGAAGAAACGGCAGTTTACGTACAGATAAGTTCTTGTACA GTAGTGCCGTGTGTACCTGTAAACGTAATGGATGGTATTAATAGTAATGG ATATGAAAACGCCACCAGGACCCAGCAAGGGCGTGCACAGCAGTTTAAAT CTTACTCCAAGAGAACCTCGATTATCTCTACCTGATGATCGTGATAATCT ATTGGGCCTCTGTGGATCATCTATTTCTCATTGGCAAGACATCTATCATA CTCCGCGAGAGTCAAGAGCTAATAACAATAATATTAACCATAATCATAAT GGTGCTCCAACGCTGGGACTGGATTTCCTCAGGGCTTCTAAGGGTACAAT CACAATCACGTACACTCTGGGCTCCTCTGGGAACAATTTTGAAGATGAAG ATAAAGATGAAACGCAGGAAGCCACGCTCGTGTTGGGCCAAGATCTTGGC AAGCTAGGGCTTGGTGCAGTCGTTTGGGACTGTGTAAGTGAAAAAAATCC GCCTGAAAACACTTTTATTTTCTTATCATGTCAGCAGCTCTAAACAGCTA CGGCCCCAACCATGGGATATCAATCTCTACTTGGTACACGATCCACCCTG AATGTCTACTTGAGTGCCAATATTATCCATATGTATGGTCACACATATAG CAAGAGTATGGATCAACCTGGTAAGGTTGCCAATCCTGCTCGTGGTCAGC TAAACAGAGAAAGGAATATTCCCCTGTCCGCGTTCGCGCCTGGGAATTTG GTCTCGCGAGACGGTTTCGGCAGTCCCATCCCGCGTCAGCCTGCTCATCT CCATACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCCGAGTTC CGCGGCGGCGTCCATATATTAATATTAAACCGCCATACGCCATCGGGTCA GTCCCGAGTAAATCGGGTCACGCAATTGCGTACCGATGGACTGACTGACG TACAATAATAAATGTTTTGACATTTTTCCCCAGGGACTGACTGACGTACA ATAATAAATGTTTTGACATTTTTCCCCCTGACTGGGGGATCAATGATCAA TGATGATGATGATGCTGCTATTAACAGAAGGTCTAGATGCGTTAGGATTG TTCTTTAAAATACCTGCTGGTATAGCGGTACAGTATAATAGTTGTTGGTG GGGTTGTTTTGGGTTTAAAATAGACCACAGTTACACCACACTATTCTAGG CGCGTTTTGTGTTTTCAAACGGATTCAAAGCGCTTCTTGGCCTCAACGGC TTGAACCAGAGGATACGATTTTTTAGTATTCCGTGGTCATGTTGCGCTCG CAGAAGAGGCAGTAGTGCACAATAACGCTCATTCTATCTCTGGCACGCAC CGTATCCTCTCGCCTTCTGCAACGCTGCACGAAGGGCGTGGATCTTGCTG CGTTCCTCGGCCGACACCATCACCTCGTAGCTGACAAGAAAGTTCTAGAC CTCGGTACTGGCACGGGTATCGTGGGACTTGCCGCAGCCCAGTGCGGCGC CAACGAGGTCGTTTTGACTGACCAGCCTGCCTTGGAGCCTCTGGTACGGT CGAACATAGAGCGCAACTCTGGGTGTACCGGCAACCGCGTGAGGTTTCAG CCTTTGAAATGGTAAGGGTCTCAATAAGCAGTGTTGGCCATGATCAAACT CACCAAAATGTATTAGTAAAACAATGATCTTGCAGAACTTAACGCCAGAG TCGTCGACGAAAGTGGCTCACGTTCCTGATGTTGTTGTTGTTGTCTTCAC ATTAAAAACCGTTCTGACCTCTATCCAGTACCTTCTCTTTCTTACTCTTC AAGGCAAAGAAACGAATTTCCGTGGTCACAGGCTAACCCAACTAAGGTAC AGAAAAATAATAAGATAAAATGAAAAGACCCAGAGAAGGTTCCAACATTA GCCAAAAAAATAAAATAATAATAATAATAATAATAATAACAAGTTCAGAA AACAAGAAAAACAACAAGGAAGTAGAGCCCATCGCTCCAAACTCGGGAGC TGAGTCACAAAATATATATATATATATATATATATATATATAGCGGTACC AATACAGGTACAAAACTAAATTTGAAGAGGACGCTATCCTCCCTCCCCTA CGATGCCGGGGAGTGTTCATCGTCGGGTTCCCGCCGACCAGGCCATTCCA ACTCAACACCCTGGAGCTGTGAGAGGGCAAAATCAAAATTAAAAATTAAC GACGCACATCATGCAATATAGTACCAGATGTCCTAGACATTCTCTCTACG CGCCCCTACTATGCCGGGGAGCTCTTTGTCAGGGTTCTCACCAACCAGGC AGATAAAATACGGCCAGACAGTTATCTAATGCACACCGCGTGCTCTCTTT TTTTCCGTGCTGCCGACACATTCGTACTGGTAGGGATGAAGTCGACTCAC AGTTGAGGCAACTCACGTCGCCGGACGAGCCTTTCGACGTGATTCTGGCA TCCGACTGCCTTTACGACCATGCAGCGTTCCCGGCATTTAGGCGAACACT GAGAGCCGTTTGCGGTTCATGTGCAGTACTTTTGATGGCGTATAAGCGGC GTCTGAATAGGTATATAGAGTATTTTCACTTCAGAATGGATGAACGACGA CGATTGTTTACTCTCTACTGAGCAGGTTGACTGGCTACTTTACTGTATGC GTGAGATTCAGTTCCACCGTGCAAAAGATGCATGCGTTCACATCGATACC CCGTGTTACGGTCGTTCAGTTTCCAGGACGGCAATGCACTCCCGCCCCCC TCACGATGTCCGAACATGGTGATGAACTCCAACTCTCTCTCTCCGCTATC GTCCTCAAATATTGCTTCAAGTCGTGAGCAGACATTCTTCGAACAGCTGG AAGTCGACTTCGATTTGATGAAAGTGGCGGAGTCGCACGTAAATGACTCA CGGGGTCCTTTAAGCTCATCTCCGAGAGCGACAACGGACATGCGCTACTC GTATGCTGCTCTACGTGCTCTACGTGAGGTGCACATTATACTTGGCGCAC GTCGCGGATGCTGATGCTTCGCTTGTAGGGGTTAAGCGCAAGAAGATTGT TTGGTAGGAGAGAGGAACCATAGCAAATGTAGGACCTCAACACGCGTCGA GAGCGAAGTTGGGGTCAAGGGGTAAGCGTGGTGAGCAATAAACAGGGCCG CCCCCAATACTTATGTTGCATTTGAGAACTGGATTAAGTTATATTTAATG AAAAAGCAGAACGCGCCTATACC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig927:189520..192742-

>mRNA_F-serratus_M_contig927.20664.1 ID=mRNA_F-serratus_M_contig927.20664.1|Name=mRNA_F-serratus_M_contig927.20664.1|organism=Fucus serratus male|type=CDS|length=1998bp|location=Sequence derived from alignment at F-serratus_M_contig927:189520..192742- (Fucus serratus male)
ATGGTATTAATAGTAATGGATATGAAAACGCCACCAGGACCCAGCAAGGG
CGTGCACAGCAGTTTAAATCTTACTCCAAGAGAACCTCGATTATCTCTAC
CTGATGATCGTGATAATCTATTGGGCCTCTGTGGATCATCTATTTCTCAT
TGGCAAGACATCTATCATACTCCGCGAGAGTCAAGAGCTAATAACAATAA
TATTAACCATAATCATAATGGTGCTCCAACGCTGGGACTGGATTTCCTCA
GGGCTTCTAAGGGTACAATCACAATCACGTACACTCTGGGCTCCTCTGGG
AACAATTTTGAAGATGAAGATAAAGATGAAACGCAGGAAGCCACGCTCGT
GTTGGGCCAAGATCTTGGCAAGCTAGGGCTTGGTGCAGTCGTTTGGGACT
GTATGGTATTAATAGTAATGGATATGAAAACGCCACCAGGACCCAGCAAG
GGCGTGCACAGCAGTTTAAATCTTACTCCAAGAGAACCTCGATTATCTCT
ACCTGATGATCGTGATAATCTATTGGGCCTCTGTGGATCATCTATTTCTC
ATTGGCAAGACATCTATCATACTCCGCGAGAGTCAAGAGCTAATAACAAT
AATATTAACCATAATCATAATGGTGCTCCAACGCTGGGACTGGATTTCCT
CAGGGCTTCTAAGGGTACAATCACAATCACGTACACTCTGGGCTCCTCTG
GGAACAATTTTGAAGATGAAGATAAAGATGAAACGCAGGAAGCCACGCTC
GTGTTGGGCCAAGATCTTGGCAAGCTAGGGCTTGGTGCAGTCGTTTGGGA
CTGTGGCGTGGATCTTGCTGCGTTCCTCGGCCGACACCATCACCTCGTAG
CTGACAAGAAAGTTCTAGACCTCGGTACTGGCACGGGTATCGTGGGACTT
GCCGCAGCCCAGTGCGGCGCCAACGAGGTCGTTTTGACTGACCAGCCTGC
CTTGGAGCCTCTGGTACGGTCGAACATAGAGCGCAACTCTGGGTGTACCG
GCAACCGCGTGAGGTTTCAGCCTTTGAAATGGGCGTGGATCTTGCTGCGT
TCCTCGGCCGACACCATCACCTCGTAGCTGACAAGAAAGTTCTAGACCTC
GGTACTGGCACGGGTATCGTGGGACTTGCCGCAGCCCAGTGCGGCGCCAA
CGAGGTCGTTTTGACTGACCAGCCTGCCTTGGAGCCTCTGGTACGGTCGA
ACATAGAGCGCAACTCTGGGTGTACCGGCAACCGCGTGAGGTTTCAGCCT
TTGAAATGGGATGAAGTCGACTCACAGTTGAGGCAACTCACGTCGCCGGA
CGAGCCTTTCGACGTGATTCTGGCATCCGACTGCCTTTACGACCATGCAG
CGTTCCCGGCATTTAGGCGAACACTGAGAGCCGTTTGCGGTTCATGTGCA
GTACTTTTGATGGCGTATAAGCGGCGTCTGAATAGGGATGAAGTCGACTC
ACAGTTGAGGCAACTCACGTCGCCGGACGAGCCTTTCGACGTGATTCTGG
CATCCGACTGCCTTTACGACCATGCAGCGTTCCCGGCATTTAGGCGAACA
CTGAGAGCCGTTTGCGGTTCATGTGCAGTACTTTTGATGGCGTATAAGCG
GCGTCTGAATAGTCGTGAGCAGACATTCTTCGAACAGCTGGAAGTCGACT
TCGATTTGATGAAAGTGGCGGAGTCGCACGTAAATGACTCACGGGGTCCT
TTAAGCTCATCTCCGAGAGCGACAACGGACATGCGCTACTCGTATGCTGC
TCTACGTGCTCTACGTGAGGTGCACATTATACTTGGCGCACGTCGCGGAT
GCTGATCGTGAGCAGACATTCTTCGAACAGCTGGAAGTCGACTTCGATTT
GATGAAAGTGGCGGAGTCGCACGTAAATGACTCACGGGGTCCTTTAAGCT
CATCTCCGAGAGCGACAACGGACATGCGCTACTCGTATGCTGCTCTACGT
GCTCTACGTGAGGTGCACATTATACTTGGCGCACGTCGCGGATGCTGA
back to top