mRNA_F-serratus_M_contig128.2085.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig128.2085.1
Unique NamemRNA_F-serratus_M_contig128.2085.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig128.2085.1 vs. uniprot
Match: A0A6H5KN12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN12_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 6.600e-17
Identity = 58/124 (46.77%), Postives = 71/124 (57.26%), Query Frame = 1 
Query:   76 EATTGVMVNGYWFPSLEAAAEAPASNGFDFSEAVEVAASVE---RERQEHVEAERRRQARATR--GVDFSCGAVLLSAPTPFD--APEVSGDAVAAELGTRTTQ----------PLWRRLAMSV 396
            E   GVMVNGYWFPSL+AAA+APA  GFDF+EA   AA      +ER+  ++A +RR A   R  GVDF+CGAVLLS P   D     V+GD      G R  +          PLWRR  ++V
Sbjct:  184 ETVAGVMVNGYWFPSLDAAAKAPAGKGFDFAEAAANAAXXXXRAKERRRKMQAAKRRAAELARPKGVDFTCGAVLLSCPARHDNSGEGVAGDDDGVLEGVRQEEEEEKKGAVRLPLWRRWTVTV 307
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig128.2085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KN12_9PHAE6.600e-1746.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig128contigF-serratus_M_contig128:674207..675123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size403
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.1590471-CDS-F-serratus_M_contig128:674206..6744251622929214.1590471-CDS-F-serratus_M_contig128:674206..674425Fucus serratus maleCDSF-serratus_M_contig128 674207..674425 +
1690962753.3773875-CDS-F-serratus_M_contig128:674206..6744251690962753.3773875-CDS-F-serratus_M_contig128:674206..674425Fucus serratus maleCDSF-serratus_M_contig128 674207..674425 +
1622929214.1710272-CDS-F-serratus_M_contig128:674941..6751211622929214.1710272-CDS-F-serratus_M_contig128:674941..675121Fucus serratus maleCDSF-serratus_M_contig128 674942..675121 +
1690962753.396725-CDS-F-serratus_M_contig128:674941..6751211690962753.396725-CDS-F-serratus_M_contig128:674941..675121Fucus serratus maleCDSF-serratus_M_contig128 674942..675121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig128.2085.1prot_F-serratus_M_contig128.2085.1Fucus serratus malepolypeptideF-serratus_M_contig128 674207..675121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig128.2085.1

>prot_F-serratus_M_contig128.2085.1 ID=prot_F-serratus_M_contig128.2085.1|Name=mRNA_F-serratus_M_contig128.2085.1|organism=Fucus serratus male|type=polypeptide|length=133bp
TRDAVRKVQSPHRLKPSSSSTSEEGEATTGVMVNGYWFPSLEAAAEAPAS
NGFDFSEAVEVAASVERERQEHVEAERRRQARATRGVDFSCGAVLLSAPT
PFDAPEVSGDAVAAELGTRTTQPLWRRLAMSVS
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mRNA from alignment at F-serratus_M_contig128:674207..675123+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig128.2085.1 ID=mRNA_F-serratus_M_contig128.2085.1|Name=mRNA_F-serratus_M_contig128.2085.1|organism=Fucus serratus male|type=mRNA|length=917bp|location=Sequence derived from alignment at F-serratus_M_contig128:674207..675123+ (Fucus serratus male)
ACTCGGGATGCTGTCAGAAAGGTGCAAAGCCCCCACCGTTTGAAGCCGTC
CTCCTCATCTACCTCGGAAGAAGGAGAGGCTACCACTGGTGTGATGGTCA
ACGGGTACTGGTTCCCGTCCCTGGAGGCTGCCGCCGAGGCTCCGGCCAGC
AACGGTTTTGATTTTTCAGAAGCAGTCGAAGTTGCCGCAAGTGTCGAACG
AGAGCGGCAGGAACATGTGGTGAGTGGAATAGAGAGACCGGGTGCGGGTG
GGCGGCCCAAAGAAGAAACGCCTGCGGTCGGTGCGACGCGATCTCGGATC
GGTACCGAGACTTGAGAAAAAAGTCGTCGTCACGGGTGTAGTAGTTTTGT
AACACATTCCGCTATCTCGACCGTACTCTATTGTAGTGAGTATCAGCTGG
GCTCCTGGCACTGTCTCCCGAGTTGTCAGGGGTTTGGTGGACACTACGCC
ACTACCGCACGGTGTCCGAGAGACTTGTCATTTGATTCGTGATCGGCGAA
GAAGAAAACGAAGAGACTTGTCATTTTATGACTATATGACCCCAAAACAA
TATCTCTTAAGGCGGTGTGGGGGAAAACGATCAAATGTCCACCATCTGCG
TTCGGTACTCTCATTGCCTCTCCTCTGTCCCTTTACTAAATCTGATCTAA
AAGCCTTCGTTCTCTTGTACAACTCTCTCTCTCTTTCCTCTCTCTTTCCC
CCTCTAAATAACGATATAATTATAACATTTTATAGGAGGCGGAGAGGCGA
CGGCAAGCGAGGGCTACCCGAGGAGTAGATTTCTCGTGCGGCGCTGTGTT
ACTCTCCGCGCCGACGCCCTTCGACGCCCCAGAAGTCTCCGGCGATGCCG
TCGCCGCGGAGCTTGGGACAAGGACGACGCAGCCATTGTGGCGGCGCCTG
GCCATGAGCGTGTCGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig128:674207..675123+

>mRNA_F-serratus_M_contig128.2085.1 ID=mRNA_F-serratus_M_contig128.2085.1|Name=mRNA_F-serratus_M_contig128.2085.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig128:674207..675123+ (Fucus serratus male)
ACTCGGGATGCTGTCAGAAAGGTGCAAAGCCCCCACCGTTTGAAGCCGTC
CTCCTCATCTACCTCGGAAGAAGGAGAGGCTACCACTGGTGTGATGGTCA
ACGGGTACTGGTTCCCGTCCCTGGAGGCTGCCGCCGAGGCTCCGGCCAGC
AACGGTTTTGATTTTTCAGAAGCAGTCGAAGTTGCCGCAAGTGTCGAACG
AGAGCGGCAGGAACATGTGACTCGGGATGCTGTCAGAAAGGTGCAAAGCC
CCCACCGTTTGAAGCCGTCCTCCTCATCTACCTCGGAAGAAGGAGAGGCT
ACCACTGGTGTGATGGTCAACGGGTACTGGTTCCCGTCCCTGGAGGCTGC
CGCCGAGGCTCCGGCCAGCAACGGTTTTGATTTTTCAGAAGCAGTCGAAG
TTGCCGCAAGTGTCGAACGAGAGCGGCAGGAACATGTGGAGGCGGAGAGG
CGACGGCAAGCGAGGGCTACCCGAGGAGTAGATTTCTCGTGCGGCGCTGT
GTTACTCTCCGCGCCGACGCCCTTCGACGCCCCAGAAGTCTCCGGCGATG
CCGTCGCCGCGGAGCTTGGGACAAGGACGACGCAGCCATTGTGGCGGCGC
CTGGCCATGAGCGTGTCGGAGGCGGAGAGGCGACGGCAAGCGAGGGCTAC
CCGAGGAGTAGATTTCTCGTGCGGCGCTGTGTTACTCTCCGCGCCGACGC
CCTTCGACGCCCCAGAAGTCTCCGGCGATGCCGTCGCCGCGGAGCTTGGG
ACAAGGACGACGCAGCCATTGTGGCGGCGCCTGGCCATGAGCGTGTCG
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