mRNA_F-serratus_M_contig128.2084.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig128.2084.1
Unique NamemRNA_F-serratus_M_contig128.2084.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig128.2084.1 vs. uniprot
Match: A0A6H5KN12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN12_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.780e-13
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:  547 RIELAAEVVGAVTKAAVGVAVNRAAATVSEKQGIQPRDRPVA----SGAKRKALPGLLSNLVTFLRSNE-ASP 750
            ++ELAAEVVGAVTKA VG AV+RAAATVSE+QG+ PR R  +    +GAKRKAL GLL N V FL++++ ASP
Sbjct:   67 KMELAAEVVGAVTKATVGFAVDRAAATVSEEQGLPPRTRAASQQEWAGAKRKALVGLLGNFVAFLKTDDDASP 139
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig128.2084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KN12_9PHAE4.780e-1364.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig128contigF-serratus_M_contig128:668496..674245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_002060.1
Exons3
Model size803
Cds size672
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig128.2084.1prot_F-serratus_M_contig128.2084.1Fucus serratus malepolypeptideF-serratus_M_contig128 668625..674245 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929213.9923584-UTR-F-serratus_M_contig128:668495..6686241622929213.9923584-UTR-F-serratus_M_contig128:668495..668624Fucus serratus maleUTRF-serratus_M_contig128 668496..668624 +
1690962753.3286169-UTR-F-serratus_M_contig128:668495..6686241690962753.3286169-UTR-F-serratus_M_contig128:668495..668624Fucus serratus maleUTRF-serratus_M_contig128 668496..668624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.0073037-CDS-F-serratus_M_contig128:668624..6690621622929214.0073037-CDS-F-serratus_M_contig128:668624..669062Fucus serratus maleCDSF-serratus_M_contig128 668625..669062 +
1690962753.339827-CDS-F-serratus_M_contig128:668624..6690621690962753.339827-CDS-F-serratus_M_contig128:668624..669062Fucus serratus maleCDSF-serratus_M_contig128 668625..669062 +
1622929214.0221212-CDS-F-serratus_M_contig128:673405..6736001622929214.0221212-CDS-F-serratus_M_contig128:673405..673600Fucus serratus maleCDSF-serratus_M_contig128 673406..673600 +
1690962753.3509326-CDS-F-serratus_M_contig128:673405..6736001690962753.3509326-CDS-F-serratus_M_contig128:673405..673600Fucus serratus maleCDSF-serratus_M_contig128 673406..673600 +
1622929214.1277246-CDS-F-serratus_M_contig128:674206..6742451622929214.1277246-CDS-F-serratus_M_contig128:674206..674245Fucus serratus maleCDSF-serratus_M_contig128 674207..674245 +
1690962753.363072-CDS-F-serratus_M_contig128:674206..6742451690962753.363072-CDS-F-serratus_M_contig128:674206..674245Fucus serratus maleCDSF-serratus_M_contig128 674207..674245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig128.2084.1

>prot_F-serratus_M_contig128.2084.1 ID=prot_F-serratus_M_contig128.2084.1|Name=mRNA_F-serratus_M_contig128.2084.1|organism=Fucus serratus male|type=polypeptide|length=224bp
MAIFEKEITAPNPTFRLPFLAKALTAKTPRSGVSVVSRMPRTGPCNLVTL
SLLFMLTVSREDTMAFVSQPFEVPTSSPRSRRGMTRTTPGRGCHNPARLG
WNLDGCGRSTLLPTSERDRPRLGMNAGGEDRHHQSEEEERIELAAEVVGA
VTKAAVGVAVNRAAATVSEKQGIQPRDRPVASGAKRKALPGLLSNLVTFL
RSNEASPGRRQTRDAVRKVQSPHR
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mRNA from alignment at F-serratus_M_contig128:668496..674245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig128.2084.1 ID=mRNA_F-serratus_M_contig128.2084.1|Name=mRNA_F-serratus_M_contig128.2084.1|organism=Fucus serratus male|type=mRNA|length=5750bp|location=Sequence derived from alignment at F-serratus_M_contig128:668496..674245+ (Fucus serratus male)
GCGGTACTGTCAGTTCTCTGTTTACAGCTGCGTCATCCGTGCTTGCGCAG
GATGTTTCCACTCCCATCATTTACTCGCGTGTTGTCCTTGCTTCTGGCAT
CTCTCACCAGGATATGAACCGAATTCTCGATGGCGATATTCGAAAAAGAG
ATAACAGCTCCCAACCCGACATTCCGGCTGCCCTTTCTCGCAAAGGCACT
AACGGCGAAAACACCTCGATCGGGTGTGTCCGTAGTTTCCCGCATGCCTC
GCACGGGGCCTTGCAATCTTGTGACTTTATCTTTGCTTTTTATGCTTACA
GTATCCAGAGAGGATACCATGGCATTTGTTAGCCAGCCCTTCGAGGTCCC
TACGTCGTCGCCGAGATCCCGACGAGGGATGACACGAACGACGCCTGGTA
GGGGTTGTCATAACCCTGCTCGTTTGGGGTGGAATCTGGACGGGTGCGGC
CGGTCGACGTTATTGCCCACATCAGAGCGGGATCGGCCAAGACTGGGCAT
GAATGCTGGTGGCGAGGACCGTCATCATCAATCCGAGGAGGAGGAGAGAA
TAGAGCTTGCCGCCGAGGTTCGAAGCGTTTATATTTACACTGTAGGTTAA
ATGTTGGATAGCTTGGCATTTACAGCTACAAATTACATGAGCCGGTCGCC
CCGGTAGCTCAGAGGTAACCTCGTAACCTTGACACGTGGACGTGAGTTCG
AATCCCGTAAACAGAACTTTTTTCACTAAAAAAAAAAAAATGTCCAACAA
GTGTGTGTGTGTGTGTTTTCTTCCCATCCATTCTGGACATCAATGGACGT
ACCAGCCGGGGTCAGGAGGAAGGTCACACAGGATTTCTCATCCACCTTCC
TTCTGCGGGGCGTGCCTCAATTTTTATCGCGAGAAGGATTCAGCCATTCC
TTTCCCTCGTCGACCGTGAAGTCGAATTTTGTGTACTAACGAATTAATCG
TTCTCCACCCGTTGGGCATTTTTATTTTAGTTTTTAGTATTTAGTGAGGA
CAATCCCGTTTGCCGGATTCGAACTCACGTCCCAACGTGTCAGAAGGTTA
CGAGGTACCTCTGAGCTACCGGGGCGACCGGCCTATGTATGTATGGTCAC
ACATATAGCAAGAGTATGGATCAACCTGGTAAGGTTGCCAATCCTGCTCG
TGGTCAGCTGAACAGGGAAAATAATATTCTCCTGTCCGCGTTCGTGCCTG
AGAATTTGGTCTCGCGAGACGGTTTCGGCAGTCCCGTCCCGCGTCAGCCT
GCTCATCTCCATACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTC
CCGAGTTCCGCGGCGGCGTCCATATACTTATATTTTAAACCGCCGTACGC
CATCGGGTAAGTCCCGAGTTTATCGGGTCACGCAATTGCGTACCGATGGC
GCTCACTGCCGAGAGTCCGTCGGCACAGGGCCAGTAAACCTCAAGGTAGT
TCCGAACGAGTGCTGCCTTGGCAGGTCACCATGGACCAATTAATATACGC
CTCTCTTTCCCACGCCCACTATTGGTATGAAGTGGCTATGGCATGTTGAA
AATAACGAAGTAGAGAACGATTAAATCGTTAGTACAGTACACAAAATTCG
ATTTCATGGTCGACGAGGGAAATGAACGACTGAATCCTTCTCGCCAGAAA
AATAAAGGCATGTATCGCAGAAGGAAGGTGGATGAGAAATCTTGTGTGGC
CTTCCTCATGTGTGACTCCGGCTGGTACGTCCAATGAACTTGATGTCCAG
AATAAATGGGAAGAAAATACACACACACACACACACACACACACACACAC
ACACATGTACTTCAAACCGCAGGAGTAGTACCAAACTGGATTTCTGCACA
TGCGTACTTTATTGTTTATCTCACATTAACTGATCCTCTACGAATCCAGC
CGTAGTCACAAAATAGACGGAACCAAACCAAACCAAACTGAGAATACGGT
CTCGGAGGGAAAAAACAACACGGAAAGCCGACAGAAGGAAACGGACTTGA
AAGTGGCCTGCAAAGGATGTCGTCGCCAGAAAAAGCAGACATTAATAGGA
AGACAAGGACAAGAACAACGAATGCTAACGCACGGCGAAAGAAAAACGAA
GGAGCAGGGAAAAGGGGACAGCAATCAGATAAAATGTACCGTAATGATGA
AGTTAACAGGCACAGGGAGAAGCTTCGCGAGGGGTTATTAACAGCTGCCC
ATAAATGAAACAGGAGCAGGGCCCTACGCATACCGGACTCACCTATCGTA
TATCGCAGGAAGAAAACAAATAAAAACATCACCAAGAAGGCAAAACAAAA
CAAAAATCGCACACGTAACTACTGCTGTACGAATCCAGTACCCACGCGCT
GGGGCCGCACGTTTGATTGGCAGAGGTCCGCGCGTTGCCAGGCGTTATCG
ACTGCTTCCGCTACCCTCTCAACCCCCGGTGCCACATGCTCACGTTCTTC
GCAGCAGTCATCCAATCCCGTCCATCCTTGACAACAACTCCGAATGTCAC
CCATTTCCGTCCTGTGCCTTTTCGCGGGATCGCCCCGAAGGCCTCGAGGT
TTTCTCTGGAGGTGGCCCGCCCAAGACGTCGCCGGTCGGCCTCCTCTCGC
CTGGGCCCTTGCACTGCCAGCCGCCCAAGCACGATTCGCTTTGAGAACCT
TGAGTCGCCTTGCCGAATAAAGGCTCCGGGGAACCCAAGTTGACGCTTCC
GAGCTGTCGTTTTGATGCGTTCGGAACCGGTCCTCTCGAGAGCCTCTCCA
TACGATAAACCTTTGCATCCGACACGATCCTTGCGCCGAAAGCCGATGAC
GCGCAAAAGTAGCTTGTGGTGGGCGGTACGCAGGGCTGCCAAAGTCCTGA
GTGTGCACAGTAGTCCACGTGGCACATCCGTACAGCAGCATAGCCTCCAC
CACCTCCGCTTTGGAGCCTTACATTACGTTATCTTGAGCGACAGTGGGTC
GTACAGTTGGGAACTGTATCTTTTGACACTCGCCCAAGAGGCGCCGGTAT
GACGCTTAATCTCGATGTCGAGGTCCGCGCGCCCGCTGATTGCACCACCA
AGGTACACGCACTCGGTTGTCTGTTTGTACCGTTGGCCTGCCGCCTCATT
TCGCAGCGCGCTCGACGCTGTGCCGGGGTCATCGGACGACACATGCATGG
CCTCAGTTTTCTTCTCCGAAACTGTCAGTCCCAATTCCTGACACGCGGCA
ACTATAACGTCCATCGTCTTGGCAGGCCCACGCGGAGATGTCGACAACAC
TCCCGCATTGTCTGCGTACAGCATCCCCCGCTCCGCTCGCCGAACCATTT
CTAACGTTCCGTCCTCCCTGGGCCTGCCATCCACACCCTTTGGCGCACCA
TCGAGGTGTACATCAAGTGCGAGACGATCACCGGATCCGCCGCGAACCGC
TGCAGAACCACTATGATGGCTGCCGCAGATATATATTGAACGATAGCGGC
GACATCACACATCATTGCCGGAAGCCCTGGCAAATATTGAACCAAGCCGA
GAAGTCTCCATCATCCAGCTGTACGCGAGCCCGTATACCATCGTGGAACA
TGCGGATGACCTTGATCATGCGGGGCGGGACTCCGTAGTATATACGACCA
CCTTGAGTACGATAATATCACTATTATAATATGCCTCCCATTGGCTGCCT
CTCATCTCATTGGCTGCATCCCATTGGCTGGGTCAGTCCGGCCTCTTTAC
TGAAGCGACAAGGGAACGAATCGAAGGCACCTGGCAGTAACTTCTTGCTG
CAGGAAATATAATGGTTTCCCGGCGTGCCGTTCAGCTGTCGCAGCTGTTC
TGCAATGTGCGAAGATCGGTTGAAAAAGTTCTTACACTCTGTGCAATGTA
CGTTATTAATGTTCATAGTAGTGTACAGCAGTACCTATCAAAAGCTATTT
CGCGGCCTTCTTACTATTACTACTATTTACAGCAGAACTAATGGGAATGT
GGTTTGCGTATCGTCGATTCTATTGGACGAGTGCCCGTACCCTGGCCTCG
TTCTCGCCTAAACTTGACATGTCGTCATGTGAAATAAGATGGCGTAAGAT
CGCAGATCTTTACCGGCCGTTGTAAAACCTACAATCGGTATACTTGATGA
AATATCGGCTGACGAACGTCCCCCCCCCCCCTCATCGGAGTTGCATGTAT
TTGTTTGTATCTCACTTaaaACGGCCGATGGGCCTGAACATGCTAGATTG
CCAGTCCCACCGTCTGCAACGTTTGCCATCCAGCCGGTGGTCACGAAGGA
TCTTCCCATCTCTCTCCCGGAGGCTCTCCCCTACCATTTTTTATCGCGAT
GCAAGTTCAGCACTCTTAAAACCGCTGCAAATGATTGGTTAAATATATAT
ATATTTTCCACCTACTCTCACGCTTTCCGTTACGGGAACTAGAATAAAAG
AAAGCATCCCGTCAAGAATCGAACTCCCGAAACCCGCAATAGTGAACTGC
GGGGTTATCCACTACTCCGTTCGGGCGAGCAGATATTGCTCGATCGTACG
TCTGAAAACACTACGTGGTCGCCCGAGTGGTCTAGTAGGTAACCTGCATA
CCTGCTATTAATAGTGCGGAAGTCGCGAGTTCGATTCTTACCAAAGTAGG
ACTTGTGTTATTTCTTTCGTAACGGAAAGCGTGGGAACGTGAGTAAGTAA
AATTCAACCATTGGTTGACCAGTTGTAAGATTGCTGAACTTGCATCGCTA
TAAAAAATCGTAAGGCGTGAACCGGGGAGAGATGGGAAAATCCTTAGTGA
GACCACAGGCAGGATGGTAATGATGAGGTCCATCGGCTATAAGTGAGATT
AAAAAAGAAAAAGAAAAGAAAAGTGTGCAATGTACGTGGAAACTCTAAGG
CATTTGATGCTAAGCTCTTGACCTCGTCCCGACTCTTACAACGATTTCGC
GCGGTCGCAGGTGGTGGGGGCAGTTACGAAGGCCGCGGTTGGCGTTGCCG
TGAATCGCGCGGCGGCGACGGTATCGGAAAAGCAGGGGATCCAGCCGCGT
GACAGGCCGGTCGCATCAGGAGCCAAGCGAAAAGCGCTGCCTGGGCTCCT
GAGTAACCTGGTGACCTTTCTTCGGTCAAACGAAGCGAGTCCCGGACGAA
GACAGGTGTGCGCAATCACGTTATAGTCCGTTGAAAGCCCCTTCTAAGCT
GTACGAGGTTTAGTGAAGCTACCTCTGGGAAAATAGGGGACCGGTAGCTG
CTAGGCGTCGAGAAACTCCGAAGTACAACATCGACAGCACTTTTTTCATG
GGTGTTCCACCACCACAAACCAGGCATTTTTACACCCTCGACGTTCCTCC
ATGCAACCAACGGCAACCAAACCACTTGGTAGTGTGTGTATCATACGATA
CCACCGCGGGTGTATAGCGCCTTCTGTTCAGCGTGAAACGCGTACGGTAC
GCTTCCTGCTCGCGTCGGCAGTCTATGATTGTCTTTCGAGGCGAACGCGC
GGGAAGCTTTCGTAGAGCCAAAAAGGCCCGAGCATGCCGGGGAGCGGGCA
GGAGGCGACCTCGGCAGGTGTTGAAGCTGGTTAGAATTAGTCATTCGCCT
CATGCTTTGTAATAGCCGTATAGCATAGGTGTATACTTTCAGCTGCGCGA
GGGTTGGGGTTGTCAGGAGTCCCCGTTCATCACCGTGGTAAGAGATCTTT
TGGGTGTGCCCCGACTGTTCCCTCTTGCTCGCCTAACCGGTGCGATGCGG
CCTGGGGAAAGACTCGGGATGCTGTCAGAAAGGTGCAAAGCCCCCACCGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig128:668496..674245+

>mRNA_F-serratus_M_contig128.2084.1 ID=mRNA_F-serratus_M_contig128.2084.1|Name=mRNA_F-serratus_M_contig128.2084.1|organism=Fucus serratus male|type=CDS|length=1344bp|location=Sequence derived from alignment at F-serratus_M_contig128:668496..674245+ (Fucus serratus male)
ATGGCGATATTCGAAAAAGAGATAACAGCTCCCAACCCGACATTCCGGCT
GCCCTTTCTCGCAAAGGCACTAACGGCGAAAACACCTCGATCGGGTGTGT
CCGTAGTTTCCCGCATGCCTCGCACGGGGCCTTGCAATCTTGTGACTTTA
TCTTTGCTTTTTATGCTTACAGTATCCAGAGAGGATACCATGGCATTTGT
TAGCCAGCCCTTCGAGGTCCCTACGTCGTCGCCGAGATCCCGACGAGGGA
TGACACGAACGACGCCTGGTAGGGGTTGTCATAACCCTGCTCGTTTGGGG
TGGAATCTGGACGGGTGCGGCCGGTCGACGTTATTGCCCACATCAGAGCG
GGATCGGCCAAGACTGGGCATGAATGCTGGTGGCGAGGACCGTCATCATC
AATCCGAGGAGGAGGAGAGAATAGAGCTTGCCGCCGAGATGGCGATATTC
GAAAAAGAGATAACAGCTCCCAACCCGACATTCCGGCTGCCCTTTCTCGC
AAAGGCACTAACGGCGAAAACACCTCGATCGGGTGTGTCCGTAGTTTCCC
GCATGCCTCGCACGGGGCCTTGCAATCTTGTGACTTTATCTTTGCTTTTT
ATGCTTACAGTATCCAGAGAGGATACCATGGCATTTGTTAGCCAGCCCTT
CGAGGTCCCTACGTCGTCGCCGAGATCCCGACGAGGGATGACACGAACGA
CGCCTGGTAGGGGTTGTCATAACCCTGCTCGTTTGGGGTGGAATCTGGAC
GGGTGCGGCCGGTCGACGTTATTGCCCACATCAGAGCGGGATCGGCCAAG
ACTGGGCATGAATGCTGGTGGCGAGGACCGTCATCATCAATCCGAGGAGG
AGGAGAGAATAGAGCTTGCCGCCGAGGTGGTGGGGGCAGTTACGAAGGCC
GCGGTTGGCGTTGCCGTGAATCGCGCGGCGGCGACGGTATCGGAAAAGCA
GGGGATCCAGCCGCGTGACAGGCCGGTCGCATCAGGAGCCAAGCGAAAAG
CGCTGCCTGGGCTCCTGAGTAACCTGGTGACCTTTCTTCGGTCAAACGAA
GCGAGTCCCGGACGAAGACAGGTGGTGGGGGCAGTTACGAAGGCCGCGGT
TGGCGTTGCCGTGAATCGCGCGGCGGCGACGGTATCGGAAAAGCAGGGGA
TCCAGCCGCGTGACAGGCCGGTCGCATCAGGAGCCAAGCGAAAAGCGCTG
CCTGGGCTCCTGAGTAACCTGGTGACCTTTCTTCGGTCAAACGAAGCGAG
TCCCGGACGAAGACAGACTCGGGATGCTGTCAGAAAGGTGCAAAGCCCCC
ACCGTACTCGGGATGCTGTCAGAAAGGTGCAAAGCCCCCACCGT
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