mRNA_F-serratus_M_contig920.20621.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig920.20621.1 vs. uniprot
Match: A0A6H5JNJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ9_9PHAE) HSP 1 Score: 1009 bits (2608), Expect = 0.000e+0 Identity = 640/968 (66.12%), Postives = 707/968 (73.04%), Query Frame = 3
Query: 6 PPRPWSLLRGGGARGRLGGG---FLHRVSAHALACPANHVSGVRLLAALLPHESPTPLHRLVLPVATAAAXXXXXXXXXXXVGGANVSGGTDDLGRLVGGVHTAAALERSEGLRRQAVVALESRVGEVLRGWDVCIAGDVCHTRRAGSAAARSVDENGGTSGEKESAPGGDDAVDEASDDGDSGEDGDRWGGGA----------------------GWRPELTSNPLLAVTAPEVVNVPAVVVSLCHTASPPLQRRVQELARRAVDVGPMTSRALCAALVRSLIGSIERYIGQSQPLGGRAEKDRESSWEPVCRVLLVMLAVANKPRSAAGRVGLLLGGAVEALMPCLGLPKPEIIRSALEVLCCFVEGPRVAEVRRYSEPACSFGTLATAARNVVAKWHRVDLHVHAWGARLLATLAAQPSCAGVALQALKPRGAEAAGVEAQEGKTTMLLPRLYAGLQKGLEDTGNRYRHRLSLLRGGKAQEQKGLDLDRRVLRLVRAACWAVQVPLALMEEGLVDATVVAGVLSPKGKASPQEEPLFKIKKAAEAFGEMRKIIAETLEVEASRLITSGTGAGEDGASNNAKGASAATPGGGVNGAXXXXXXXXXXXXXXXXXXXXXTDGARSQLASLHATDRYLVALINGTGRLLAACEAVRGTTSSRNTSSKEDSGEGGTGSAEDWFSSPSRRLVATWQAGKGSSWGGAAAVDGNGVGLWEELRPAREAWLEQGPCMGRGQLPAVLSEDGLATALQWRTEPAQLEKVFEYKPVLDKVKATHGHEPVDTSAGRLLKRPRPSFLSIEGDA-------------DTTVRFQARPAARAAGXXXXXXXXXXXXXXXXXXXXXXXXARKRPRDGKGLAFGAGLISR-GGAASMGLPTTLAAMMDLASKDPARFNKIIEENPRLLEHLERKTAAGGGSSVSRVH-PPTPRQS-SGGALGDPRRAADPRRADPXXXXRRRK 2786
PPRPWS LR R GGG FLHRVSAHALACPANH+SG RLL ALLP ESP PLHRLVLPVATAA XXXXXXXXXXX + G +GRLVG VHTAAALE+SEGLRRQAV ALE RV E+L GWDVC+AGD+ ++ A +A A G DGD GGG GWRP L +NP+LAVTAP VVNVPAVV+SLCH+ASP L RV ELARRAV +GPMT+RALCAALVRSLIG IERY+GQS+PL GR++KDRE SWE VCRVL V+LAV++ PRS AGRVGLL+GGA+EALMPCLGLPKPE+IRSALEVLC FVEG RV+EVRRYSEPACSFGTLATAARNVVAKWHRVDLHVHAWGARLLATLAAQPS A ALQALKPRGAEAAGVEAQEGKTTMLLPRLYAGLQKGLEDTGNRY+HRLSLL+GG+ EQKGLDLDRRVLRLVRAACWA+QVPLALMEEGLVDA VVAGVLSPKGKASPQEEPLFKIK AAEAF ++R I ETLE EAS+ + +G AK A XXXXXXXXXXXXXXXXXXXXX G + L L A++RYL L++GTGRL AACEAVRGT++SRN +KE++ G TG+ E WF+S SR++VATWQAGKG A GLWEELR REAWLE+GP MGR +L AV+S++ L AL WRTE A LEKVFEYKPVLDKVKA HG PVDT+AGRL KRPRP+FLS + A + RFQARPAARAAG XXXXXXXXXXXX RKR RD K L FGAGL++R GG A LP TL AMMDLASKDPA F +IIEENPRLLE LERK A+ S S V PP+ RQ +GG GDPRRA DPRRADP RR++
Sbjct: 1519 PPRPWSRLR----RNSGGGGSSSFLHRVSAHALACPANHMSGARLLTALLPPESPAPLHRLVLPVATAAXXXXXXXXXXXXXXXTSDGG---SVGRLVGRVHTAAALEKSEGLRRQAVAALERRVREMLEGWDVCVAGDLFPSKEADAAEA--------------------------------GPDGD--GGGXXXXXXXXXXXXXXXXXXXXXXXGWRPSLETNPVLAVTAPGVVNVPAVVLSLCHSASPVLHGRVLELARRAVSIGPMTARALCAALVRSLIGCIERYVGQSKPLDGRSDKDREVSWESVCRVLAVILAVSDNPRSGAGRVGLLIGGAIEALMPCLGLPKPEVIRSALEVLCSFVEGARVSEVRRYSEPACSFGTLATAARNVVAKWHRVDLHVHAWGARLLATLAAQPSVAADALQALKPRGAEAAGVEAQEGKTTMLLPRLYAGLQKGLEDTGNRYKHRLSLLKGGRVSEQKGLDLDRRVLRLVRAACWAIQVPLALMEEGLVDAAVVAGVLSPKGKASPQEEPLFKIKAAAEAFRDLRTSIVETLEAEASKKLQAG-----------AKTA--------XXXXXXXXXXXXXXXXXXXXXXXXXXAGVHTLLTGLMASERYLAGLVDGTGRLWAACEAVRGTSTSRNPPAKEEN-SGPTGTVEGWFASTSRKIVATWQAGKGEGXXXXXA------GLWEELRQGREAWLERGPSMGRARLSAVMSDERLTAALLWRTEAADLEKVFEYKPVLDKVKAAHGLAPVDTTAGRLFKRPRPAFLSAQAVAGRGAGXXXAADRGEIAPRFQARPAARAAGSGPHAAVXXXXXXXXXXXXAPGVAGRKRARDVKSLPFGAGLMARVGGGAPRVLPATLGAMMDLASKDPAEFTRIIEENPRLLEQLERKAASTTTSGSSGVRLPPSSRQGGTGGPSGDPRRALDPRRADPRRDPRRQR 2419
BLAST of mRNA_F-serratus_M_contig920.20621.1 vs. uniprot
Match: D8LBI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI8_ECTSI) HSP 1 Score: 868 bits (2244), Expect = 1.870e-284 Identity = 567/882 (64.29%), Postives = 635/882 (72.00%), Query Frame = 3
Query: 6 PPRPWSLLRGGGARGRLGGGFLHRVSAHALACPANHVSGVRLLAALLPHESPTPLHRLVLPVATAAAXXXXXXXXXXXVGGANVSGGTDDLGRLVGGVHTAAALERSEGLRRQAVVALESRVGEVLRGWDVCIAGDVCHTRRAGSAAARSVDENGGTSGEKESAPGGDDAVDEASDDGDSGEDGDRWGGGA---------GWRPELTSNPLLAVTAPEVVNVPAVVVSLCHTASPPLQRRVQELARRAVDVGPMTSRALCAALVRSLIGSIERYIGQSQPLGGRAEKDRESSWEPVCRVLLVMLAVANKPRSAAGRVGLLLGGAVEALMPCLGLPKPEIIRSALEVLCCFVEGPRVAEVRRYSEPACSFGTLATAARNVVAKWHRVDLHVHAWGARLLATLAAQPSCAGVALQALKPRGAEAAGVEAQEGKTTMLLPRLYAGLQKGLEDTGNRYRHRLSLLRGGKAQEQKGLDLDRRVLRLVRAACWAVQVPLALMEEGLVDATVVAGVLSPKGKASPQEEPLFKIKKAAEAFGEMRKIIAETLEVEASRLITSGTGAGEDGASNNAKGASAATPGGGVNGAXXXXXXXXXXXXXXXXXXXXXTDGARSQLASLHATDRYLVALINGTGRLLAACEAVRGTTSSRNTSSKEDSGEGGTGSAEDWFSSPSRRLVATWQAGKGSSWGGAAAVDGNGVGLWEELRPAREAWLEQGPCMGRGQLPAVLSEDGLATALQWRTEPAQLEKVFEYKPVLDKVKATHGHEPVDTSAGRLLKRPRPSFLSIEGDADTTVRFQARPAARAAGXXXXXXXXXXXXXXXXXXXXXXXXARKRPRDGKGLAFGAGLISRGGA-ASMGLPTTLAAMMDLASKDPARFNKIIEENPR 2621
PPRPWS LR G FLHRVSAHALACPANH+SG RLL ALLP ESP LHRLVLPVATA XXXXXXXXXXX + G +GRLVG VHTAAALE+SEG RRQAV ALE RV E+L+ WDVC+AGD+ + A +A A D +GG +GE+ + GD+ G GA WRP L +NP+LAVTAP VVNVPAVV+SLCH+ASP L RV ELARRAV +GPMT+RALCA+LVRSLIG IERY+GQSQPL GR++KDRE SWE VCRVL V+LAV++ P S AGRVGLLLGG +EALMPCLGLPKPE+IRSALEVLC FVEG RV+EVRRYSEPACSFGTLATAARNVVAKWHRVDLHVHAWGARLLATLAAQPS A ALQALKPRGAEAAGVEAQEGKTTMLLPRLYAGLQKGLEDTGNRY+HRLSLL+GG+ EQKGLDLDRRVLRLVRAACWA+QVPLALMEEGLVDA VVAGVLSPKGKASPQEEPLFKIK AAEAF ++RK I +TLE EAS+ + +G +A TP XXXXXXXXXXXXXXXXXX G + L L A++RYLV L++GTGRL AACEAVRGT+++RN K+++ G TG+AE+WF S SR++VATWQAGKG A GLWEELR REAWLE+GPCMGR +L AV+S++ L AL WRTE A+LEK AGR XXXXXXXXXXXXXXXXXXXXXXXX KRPRDGK L FGAGL++RGG A LP TL AMMDLASKDPA F + + +N R
Sbjct: 1435 PPRPWSRLRRNGXXXXXXXSFLHRVSAHALACPANHMSGARLLTALLPPESPAALHRLVLPVATAXXXXXXXXXXXXXXXXXSDGG---SVGRLVGRVHTAAALEQSEGFRRQAVAALERRVREMLKRWDVCVAGDLFPLKEAAAAEA-GPDVDGGGAGEEGT--------------------GDKSGNGAFDGXXXXXXXWRPSLETNPVLAVTAPGVVNVPAVVLSLCHSASPVLHGRVLELARRAVGIGPMTARALCASLVRSLIGCIERYMGQSQPLDGRSDKDREVSWESVCRVLTVILAVSDNPHSGAGRVGLLLGGVIEALMPCLGLPKPEVIRSALEVLCSFVEGARVSEVRRYSEPACSFGTLATAARNVVAKWHRVDLHVHAWGARLLATLAAQPSVAADALQALKPRGAEAAGVEAQEGKTTMLLPRLYAGLQKGLEDTGNRYKHRLSLLKGGRVSEQKGLDLDRRVLRLVRAACWAIQVPLALMEEGLVDAAVVAGVLSPKGKASPQEEPLFKIKAAAEAFRDLRKSIVDTLEAEASKKLQAGA-------------KTATTP---------SXXXXXXXXXXXXXXXXXXGTGVHALLTGLMASERYLVGLVDGTGRLWAACEAVRGTSTNRNPPVKDEN-SGPTGTAEEWFGSTSRKIVATWQAGKGEGXXXXXA------GLWEELRQGREAWLERGPCMGRARLSAVMSDERLTAALLWRTEAAELEKAV---------------------AGRXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRPRDGKSLPFGAGLMARGGGGAPRVLPATLGAMMDLASKDPAEFTREMNDNKR 2237
BLAST of mRNA_F-serratus_M_contig920.20621.1 vs. uniprot
Match: A0A835ZHG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHG1_9STRA) HSP 1 Score: 291 bits (745), Expect = 1.430e-77 Identity = 270/720 (37.50%), Postives = 341/720 (47.36%), Query Frame = 3
Query: 87 HALACPANHVSGVRLLAALLPHESPTPLHRLVLPVATAAAXXXXXXXXXXXVGGANVSGGTDDLGRLVGGVHTAAALERSEGLRRQAVVALESRVGEVLRGWDVCIAGDVCHTRRAGSAAARSVDENGGTSGEKESAPGGDDAVDEASDDGDSGEDGDRWGGGAGWRPELTSNPLLAVTAPEVVNVPAVVVSLCHTASPPLQRRVQELARRAVDVGPMTSRALCAALVRSLIGSIERYIG-----QSQPLGGRAEKDRESSWEPVCRVLLVMLAVANKPRSAAGRVGLLLGGAVEALMPCLGLPKPEIIRSALEVLCCFVEGP-RVAEVRRYSEPACSFGTLATAARNVVAKWHRVDLHVHAWGARLLATLAAQPSCAGVALQALKPRGAEAAGVEAQEGKTTMLLPRLYAGLQKGLEDTGNRYRHRLSLLR-------------------GGKAQEQKGLDLDRRVLRLVRAACWAVQVPLALMEEGLVDATVVAGVLSPKGKASPQEEPLFKIKKAAEAFGEMRKIIAETLEVEASRLITSGTGAGEDGASNNAKGASAATPGGGVNGAXXXXXXXXXXXXXXXXXXXXXTDGARSQLASLHATDRYLVALINGTGRLLAACEAVRGTTSSRNTSSKEDSGEGGTGSA-----EDWFSSPSRRLVATWQAGKGSSWGGAAAVDGNGVGLWEELRPAREAWLEQGPCMGRGQLPAVLSE 2156
HALA PA+H+ +RLL ALLP P PLHRL + + L V AAA+ER +GLR A+ +E + L WD+ + A S AA S D A A ++ A+ ++CH++SP ++ ++A RA G T+R + AAL+ L ++ Y+ + W PVCR L + A+A+ AA RV LLL GA+ AL+PCLGLP+PE IR+AL L F G R AE RR+ P SFG +ATAARNV+ KWHRVDL VHA GA+LLA LAA PSCA L AL+PRGAEAAG EGKTTMLLPRLY+GL KGLED +YR R +L ++G D+D RVL + RAACWAV PLALM EGLVDA VA VL P G P EPL K+K AAEAF ++A +E A++++ A P A XXXXXXXXXXXXXXXXXXXX A + + L +T +YL L + L AACE R SS + + D+ +A E WF+ R LVA GGA G+ EE R R +E G C G +L V+ E
Sbjct: 1326 HALAAPAHHLGALRLLHALLPPAVPPPLHRLPASLP--------------------------ERDELAARVRLAAAVERKDGLREAALDEVERHMAWHLHCWDLALT----PAAAAASVAAASAD--------------------------------------GXXXXXXXXXXXGAPRASSDGSIGALTAAMCHSSSPQVRALAADVAARAAGAGAATARGVTAALLADLQRCVDTYLAGPAAXXXXXXXXXXXXXXAAPWLPVCRALQAVHALADADGGAA-RVALLLQGALAALLPCLGLPRPEPIRAALCALRPFCSGSGRAAEARRHGAPPTSFGVVATAARNVMGKWHRVDLRVHADGAQLLAALAAVPSCAAHVLGALRPRGAEAAGAAVGEGKTTMLLPRLYSGLVKGLEDAQFKYRARAALAXXXXXXXXXXXXXXXXXXXXSAGTDARRGDDIDARVLLVARAACWAVLAPLALMTEGLVDAAEVAAVLIPAG-TQPGAEPLTKLKAAAEAFVAQFVVVAPQVEALAAQVL-------------------AERPA-----AAXXXXXXXXXXXXXXXXXXXXXXXAEASVLRLLSTRQYLTVLQDAVAHLHAACEGARRQRSSADVRAALDAAAAAADAAAPQPLEAWFAQ--RPLVAE---------GGAPG------GVLEETRSGRRILMESGGCFGCEELAEVIGE 1934
BLAST of mRNA_F-serratus_M_contig920.20621.1 vs. uniprot
Match: A0A8J2SEC1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEC1_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 2.290e-7 Identity = 86/338 (25.44%), Postives = 129/338 (38.17%), Query Frame = 3
Query: 657 VSLCHTASPPLQRRVQELARRAVDVGPMTSRALCAALVRSLIGSIE-RYIGQSQPLGGRAEKDRES---------SWEPVCRVLLVMLAVANKPRSAAGRVGLLLGGAVEALMPCLGLPKPEIIRSALEVLCCF------------VEGPRVA--------------EVRRYSEPACSFGTLATAARNVVAKWHRVDLHVHAWGARLLATLAAQPSCAGVALQALKPRGAEAAGVEAQEGKTTMLLPRLYAGLQKGLE----------------DTGNRYRHRLSLLRGGKAQEQKGL--DLDRRVLRLVRAACWAVQVPLALMEEGLVDATVVAGVL 1508
V +A+ LQ EL VD+GP++ + L+ +++ ++ RAE D E ++E R ++ V S++GR L GA L+ L LPKPE++R ALE L +E R+A EV A A V+AK+H+ D HVHA AR LA LA + A PR A G + + LL R GL LE DT ++ ++ E++ + L R +L+RAA + + P+AL + D V +L
Sbjct: 1014 VKCLESAAKALQGVGSELVAGLVDLGPVSGAKTASYLLLEARAAVQCGKAKDAKAYAARAETDHEKRAAMFGELENFEAWHRAARLLTGVREACCSSSGRTALFACGAPLVLVDALSLPKPELLRLALESLAALTHDAQERTASDDIEKSRIALDALLAGYPPPERNEVYGSGISTTFLTAFARALAKVLAKYHKADAHVHASTARCLAILARERRNA--------PRVLRALGAASSSSGGSSLLTRAVTGLTTSLEALREGGPGHAPDAPEEDTTEEFKSKI-------LSERREVFEGLASRAAKLLRAAAYCARAPVALAWDARCDPVEVNALL 1336 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig920.20621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig920.20621.1 >prot_F-serratus_M_contig920.20621.1 ID=prot_F-serratus_M_contig920.20621.1|Name=mRNA_F-serratus_M_contig920.20621.1|organism=Fucus serratus male|type=polypeptide|length=684bp MTSRALCAALVRSLIGSIERYIGQSQPLGGRAEKDRESSWEPVCRVLLVMback to top mRNA from alignment at F-serratus_M_contig920:338716..348172- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig920.20621.1 ID=mRNA_F-serratus_M_contig920.20621.1|Name=mRNA_F-serratus_M_contig920.20621.1|organism=Fucus serratus male|type=mRNA|length=9457bp|location=Sequence derived from alignment at F-serratus_M_contig920:338716..348172- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig920:338716..348172- >mRNA_F-serratus_M_contig920.20621.1 ID=mRNA_F-serratus_M_contig920.20621.1|Name=mRNA_F-serratus_M_contig920.20621.1|organism=Fucus serratus male|type=CDS|length=4104bp|location=Sequence derived from alignment at F-serratus_M_contig920:338716..348172- (Fucus serratus male)back to top |