mRNA_F-serratus_M_contig920.20609.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig920.20609.1 vs. uniprot
Match: D8LBH7_ECTSI (Chitin synthase 1, chs-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH7_ECTSI) HSP 1 Score: 360 bits (923), Expect = 7.120e-118 Identity = 182/309 (58.90%), Postives = 225/309 (72.82%), Query Frame = 1
Query: 286 DAMWEWSGPVEERNRPWRHSLSLNGGIGEQGIQQTPSSQPWREHGKSDISGGVHVLVCXXXXXXXELKVMLSTFRSDKNFPCRVRLTFIVETPGYSPGDFTTRSETYEVLKQLLRVEEETDNESFGDRGYIEHSGVLDKTFVTYDLIVKGPRMPRGKRSSLLVFFNEILPIKIACGQAEEPDVVYILDADSGHPEMGLMEVELMWRLLMSEPETACLTCPVRPVNPFESLLASSQYLEQAAVWDHVGESYFALQTTCRGAQCMLKYKCLVEDRRLAQPPRGEGAMPPVLDSLDKTAAAIPSLILLDTSP 1212
+ MWEW GP ER RP + S GE+G+ P S WREHGK GG+H++VC ELKVMLSTFR+D C VR++F++E G + SET EVLK+LLRV +E+ E G I HSG LDKT + +DL VKGP +P GKR+SL+ FFN+ILP+K++ G+A EPDVVY+LDADSGHP GL ++E MWRLLM+E E AC+TCPVRPV+P ES LA+SQ LE A+WD+VGES+F +QTTCRGAQCM KY+CLVED RLAQPP GEGAMPP+L+S KTAA +P+LILLD+SP
Sbjct: 3 ETMWEWDGPESERLRPRARNNSDEDDDGERGMPLPPMSPLWREHGKGQGGGGIHIVVCCCNETQEELKVMLSTFRTDATASCPVRISFVLEPRGAAEAS----SETDEVLKRLLRVTDESATEV---SGCIHHSGTLDKTLIPFDLYVKGPSLPVGKRNSLVTFFNDILPVKMSRGEAVEPDVVYLLDADSGHPVNGLEDLESMWRLLMAEEEVACVTCPVRPVHPMESFLAASQSLE-FALWDNVGESHFGVQTTCRGAQCMFKYRCLVEDGRLAQPPVGEGAMPPLLNSFSKTAAGLPALILLDSSP 303
BLAST of mRNA_F-serratus_M_contig920.20609.1 vs. uniprot
Match: A0A6H5KP28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP28_9PHAE) HSP 1 Score: 338 bits (868), Expect = 6.960e-101 Identity = 175/315 (55.56%), Postives = 218/315 (69.21%), Query Frame = 1
Query: 271 MTEVEDAMWEWSGPVEERNRPWRHSLSLNGGIGEQGIQQTPSSQPWREHGKSDISGGVHVLVCXXXXXXXELKVMLSTFRSDKNFPCRVRLTFIVETPGYSPGDFTTRSETYEVLKQLLRVEEETDNESFGDRGYIEHSGVLDKTFVTYDLIVKGPRMPRGKRSSLLVFFNEILPIKIACGQAEEPDVVYILDADSGHPEMGLMEVELMWRLLMSEPETACLTCPVRPVNPFESLLASSQYLEQAAVWDHVGESYFALQTTCRGAQCMLKYKCLVEDRRLAQPPRGEGAMPPVLDSLDKTAAAIPSLILLDTSPS 1215
MTE MWEW GP ER +G+ S WREHGK GG+H++VC ELKVMLSTFR D C VR++F+++ G + SET +VLK+LLRV +E+ E FG I HSG LDKT + +DL VKGP +P GKR+SL+ FFN+ILP+K++ G+A EPD VY+LDADSGHP GL ++E MWRLLM+E E AC+TCPVRPV+P S LA+SQ LE A+WD+VGES+F +QTTCRGAQCM KY+CLVED RLA+PP GEGAMPP+L+ KTAA +P+LILLD+SPS
Sbjct: 1 MTET---MWEWDGPESERLXXXXXXXXXXXXXXXRGMPLPLMSPLWREHGKGQGGGGIHIVVCCCNETQEELKVMLSTFRIDATASCLVRISFVLDPRGPAQAS----SETDKVLKRLLRVTDESATEVFG---CIHHSGTLDKTLIPFDLYVKGPSLPVGKRNSLVTFFNDILPVKMSRGEAVEPDAVYLLDADSGHPVNGLQDLESMWRLLMAEEEVACVTCPVRPVHPMGSFLAASQSLE-FALWDNVGESHFGVQTTCRGAQCMFKYRCLVEDGRLAEPPIGEGAMPPLLNPFSKTAAGLPALILLDSSPS 304 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig920.20609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig920.20609.1 >prot_F-serratus_M_contig920.20609.1 ID=prot_F-serratus_M_contig920.20609.1|Name=mRNA_F-serratus_M_contig920.20609.1|organism=Fucus serratus male|type=polypeptide|length=315bp MTEVEDAMWEWSGPVEERNRPWRHSLSLNGGIGEQGIQQTPSSQPWREHGback to top mRNA from alignment at F-serratus_M_contig920:31568..58453+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig920.20609.1 ID=mRNA_F-serratus_M_contig920.20609.1|Name=mRNA_F-serratus_M_contig920.20609.1|organism=Fucus serratus male|type=mRNA|length=26886bp|location=Sequence derived from alignment at F-serratus_M_contig920:31568..58453+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig920:31568..58453+ >mRNA_F-serratus_M_contig920.20609.1 ID=mRNA_F-serratus_M_contig920.20609.1|Name=mRNA_F-serratus_M_contig920.20609.1|organism=Fucus serratus male|type=CDS|length=1890bp|location=Sequence derived from alignment at F-serratus_M_contig920:31568..58453+ (Fucus serratus male)back to top |