mRNA_F-serratus_M_contig128.2078.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig128.2078.1 vs. uniprot
Match: A0A6H5K749_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K749_9PHAE) HSP 1 Score: 402 bits (1032), Expect = 1.000e-117 Identity = 399/1145 (34.85%), Postives = 516/1145 (45.07%), Query Frame = 1
Query: 73 WPRAAVFALGIAGGSLSG-SPPHLPRGWTVHYHQGTPYFYNEFTGETTWVQPV-PTFPPPEESRNEELSSGGWPR------RDQPRERSSIPEENSA--------------GVGIPTGKRGWFGF-----GKGTTKRQQQDVEGQRSPPRLWENRGTTVSP---TSTSEYGSPEGRGGRGSPQQRVGEGRSVGADIQFGDERAP------------------------AYDPRREEPGSVASIWGD---GGGGGTTEPW--GVLDEFSV-----PGVEAQPL--------------------VPPEDPGTGTHEGTQQ---GGLTEAEGRDARVRPDVAPVAFGLDPVSDNTEAP----FSQSDGHGDWPTGASRNGDPEVWVDDIRGA-GAPVLDDKNAGMGTGQGGTTDAEGAIARAHNQGKKTDDSTEEGTQATMTHQPETATAEAGGEGEPTPSHAAPNILATEEKTTGTSEGFSPPPPTDSLLDDVASSLWGKDVIGPDVFVGRQQGNDNTVPAGERDLDADASQASYAPPSRAVGAYTAIGAWSAGETDATPGQQEE---------DGKATRQDAEWWDWADPWGQMAVWGAPAF--GTDHNDAV-------PTPDALPKGDVH----LPAQPPGGNEGASGW---------------KVVSGQIEVGVQCTETSTLGDPDAVTVASRRQELEELAQALTEKRKELED--AREVEEALRSALREQEEARASAAVXXXXXXXXXXXXXXLMKQRAEEAKENATAVGQWLMTLGLEQQNLKDQLAAAQSSSTLLTKELEDLREVSRKAEHRASSSEAKLKVALEDVAVLDEGLKQYMDGEGQ--QISLRPSSTIWRRVSEAYLRPLLPSKLKTPSPEELEAVQLNRSLGRAQENNTALAEAVRSKDDLVKDLNSRIKQFQLQAVRRKKGYHALKLGLADLTREVKAKESMVIIMVVAMVRAGLILDQMSAAIRAQREALESLASLSRDSQENVDSLSLEVEQGTTCLAQLQESLHKADSAMCAIANSLGAGEGCVQRWKDAT----------DQEMGENMSKDS-LMELVREIQAAATNKFVNPLGLEPTTGAITVAVPRTVSGQTD--------IHGVVRRQKT---FWGRLVDVICCRR 3042
WPRAA AL +AGG LSG +PP +P GWTVH+ Q TPYFYNE TGETTW QP T P + +S P ++PR SS + S+ FG W++RG T + E + +G R G G G ER P A + R E P A WGD GG +EP G F P V+A P PEDP +G + GG EA R D G+ ++ +T + ++ GD G S G D + GA GA + A GT + + TD+ L ++E T S PP D L G GP +VG G+ AG D + ++ A G W +G +P Q DG DA+W DWADPWGQ A WGAP + G + + P P + K ++ + + P G SGW KV +G AR+V+ LR+AL+++EE +A+A XXXXX ++AE AKENATA GQWL++LGLE++ LK QLAAAQ++ST L +EL L+E + +AE RA+SSE KL++A+ED+ VLDEGLK +MDG+GQ Q S R WRRVS+AYLRPLLPSKLK P+PEELEA++LNRSLGRA ENNTALAEAV SKDDLVK+LNSRIKQFQL AVRRKKGY ALKLGLA+LT EV+AKE+M+ I+ V M+ IL+ M A++ AQR + +A + RD +E V+ L++EVE GT CL LQ SLHK +SA+ A+A SLGA E CVQRWKDA +E G++ + L +L+ EI AAA FV+PLGLEP+TGAIT+AVPR + G+ V R K+ FW + D++ CRR
Sbjct: 12 WPRAAALALSLAGGCLSGVAPPSVPPGWTVHFQQDTPYFYNEKTGETTWEQPRRTTTADPATAVAPSAASAATPGYLAAAGTNEPRSPSSSHRDFSSQPXXXXXXXXXXXXXXXXXXXXXXXFGLRXXXXXXXXXXXXXXXXXXXXXXXXXWQSRGATPAGGRGALREERSQEQWQGARDRGWSHSGRG---GXXXXXRHERLPDDPQAFXXXXXXXXXXXXXXXXXGASNERWEGP--QAKGWGDEEESAAGGCSEPSRAGSSSSFGAGGLAGPAVQAPPTGVGPEGGVAGXXXXXXXXXXXAPEDPSGAQSDGVEGDVGGGALEATDEQQRRAGDQDQWWTGVSVIAPSTASAGAGRIAELGTTGDGLAGQSEGGGRIGKHDGVLGAAGAGADQARLAASGTDEIIAAEKXXXXXXXXXXXXXTDEW----------------------------------FLVSQEPQTREEHPASSSPPAWEGHDGDEGVLPGGG--GPAGYVGTATGSTG---AGGTDGQSPSTMAQKR------------GLWGSG----SPSQHXXXXXXXXYGYDGMG-HGDADW-DWADPWGQGASWGAPGWAPGAERTQEIQPGGSPPPAPSPIFKEELDGGHPIGSVPDGTGVAGSGWGRHHSGGGERPGVASKVAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARQVQAELRAALKKEEEGKAAALAAATXXXXXTEKAEAFALRQAESAKENATAAGQWLVSLGLEREELKGQLAAAQTNSTSLLEELSALKESAVEAELRANSSETKLRMAMEDIEVLDEGLKLFMDGDGQPRQQSSRAGPLSWRRVSDAYLRPLLPSKLKAPTPEELEALKLNRSLGRALENNTALAEAVSSKDDLVKELNSRIKQFQLHAVRRKKGYRALKLGLAELTNEVQAKETMMTILTVCMLGTSSILEGMYASLEAQRANIAEIAEVLRDREERVEELTVEVENGTACLTDLQTSLHKTESALSAVAVSLGAEEECVQRWKDAVAAAALGRATPGEEPGDDDDGEGPLGQLLHEIHAAAAKTFVSPLGLEPSTGAITIAVPRPLDGEAGGXXXXXXXXXXVDRGTKSPGGFWAGVFDLLFCRR 1094
BLAST of mRNA_F-serratus_M_contig128.2078.1 vs. uniprot
Match: D7FUP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP1_ECTSI) HSP 1 Score: 294 bits (753), Expect = 2.010e-85 Identity = 206/420 (49.05%), Postives = 254/420 (60.48%), Query Frame = 1
Query: 1519 WDWADPWGQMAVWGAPAFGTDHNDAVPTPDALPKGDVH----------------LPAQPPGGNEGASGW--KVVSGQIEVGVQCTETS--TLG-----DPDAVTVASRRQE--LEELAQALTEKRKELEDAREVEEALR------------------------SALREQEEARASAAVXXXXXXXXXXXXXXLMKQRAEEAKENATAVGQWLMTLGLEQQNLKDQLAAAQSSSTLLTKELEDLREVSRKAEHRASSSEAKLKVALEDVAVLDEGLKQYMDGEGQ--QISLRPSSTIWRRVSEAYLRPLLPSKLKTPSPEELEAVQLNRSLGRAQENNTALAEAVRSKDDLVKDLNSRIKQFQLQAVRRKKGYHALKLGLADLTREVKAKESMVIIMVVAMVRAGLILDQMSAAIRAQREA 2619
WDWADPWGQ A WGAP + A TP++ P G + + P G SGW G GV T + LG DA + R E + ELA+A LE+AR+V+ LR +AL+E+EE +A+A ++AE AKENATA GQWL++LGLE++ LK QLAAAQ++ST L +EL L+E + +AE RA+SSEAKL++A+ED+ VLDEGLK +MDG+GQ Q S R WRRVSEAYLRPLLPSKLK P+PEELEA++LNRSLGRA ENNTALAEAV SKDDLVK+LNSRIKQFQL AVRRKKGY ALKLGLA+LT EV+AKE+M+ I+ V M+ IL+ M A + AQ EA
Sbjct: 8 WDWADPWGQGASWGAPGWAPG---AERTPESQPGGSPPPAPSHTSKEELDGGHPIGSVPDGAGVAGSGWGRHHSGGGERPGVAPTVAAGAALGAGGEATADAAEKGATRNEGGVTELARAXXXXXXXLEEARKVQAELRQPTRRALPASRAPWFVRSVVPGKRTALKEEEEGKAAALAAATAAEEKTEKAEAFALRQAESAKENATAAGQWLVSLGLEREELKGQLAAAQTNSTSLLEELSALKESAVEAELRANSSEAKLRMAMEDIEVLDEGLKLFMDGDGQPRQQSSRAGPLSWRRVSEAYLRPLLPSKLKAPTPEELEALKLNRSLGRALENNTALAEAVSSKDDLVKELNSRIKQFQLHAVRRKKGYRALKLGLAELTNEVQAKETMMTILTVCMLGTSSILEGMDATLDAQAEA 424 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig128.2078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig128.2078.1 >prot_F-serratus_M_contig128.2078.1 ID=prot_F-serratus_M_contig128.2078.1|Name=mRNA_F-serratus_M_contig128.2078.1|organism=Fucus serratus male|type=polypeptide|length=1009bp MTGCYRRPRWPRAAVFALGIAGGSLSGSPPHLPRGWTVHYHQGTPYFYNEback to top mRNA from alignment at F-serratus_M_contig128:519815..538820+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig128.2078.1 ID=mRNA_F-serratus_M_contig128.2078.1|Name=mRNA_F-serratus_M_contig128.2078.1|organism=Fucus serratus male|type=mRNA|length=19006bp|location=Sequence derived from alignment at F-serratus_M_contig128:519815..538820+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig128:519815..538820+ >mRNA_F-serratus_M_contig128.2078.1 ID=mRNA_F-serratus_M_contig128.2078.1|Name=mRNA_F-serratus_M_contig128.2078.1|organism=Fucus serratus male|type=CDS|length=6054bp|location=Sequence derived from alignment at F-serratus_M_contig128:519815..538820+ (Fucus serratus male)back to top |