mRNA_F-serratus_M_contig919.20581.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig919.20581.1
Unique NamemRNA_F-serratus_M_contig919.20581.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig919.20581.1 vs. uniprot
Match: A0A6H5KVI2_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 8.030e-22
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 2 
Query:    2 LERAKLYMDKDQLVYMRGLIFLHVKKPMSRSQLLQKAESCLQEQGHIFAAFVKMFDRINQP----PPVPV*PTKNKQPGPSSSSGRRQVMPYTSTYALLATVP--EHPGSAHYSS 328
            LERA  YMD+DQLVYMRGL+  ++ KPM+R QLL++AESCLQEQ  IF AFVK+FDRIN P    PPVP+  +  K+P P + +  R V+  + T  +L T    E    A YSS
Sbjct: 1034 LERANAYMDQDQLVYMRGLLITNIHKPMTRDQLLERAESCLQEQPEIFMAFVKVFDRINHPYTDPPPVPLY-SGTKRPTPDTPAEPRSVLRTSFTGRVLPTAGHIESRARASYSS 1147
[Close]
BLAST of mRNA_F-serratus_M_contig919.20581.1 vs. uniprot
Match: D8LCW0_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW0_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.700e-21
Identity = 61/119 (51.26%), Postives = 77/119 (64.71%), Query Frame = 2 
Query:    2 LERAKLYMDKDQLVYMRGLIFLHVKKPMSRSQLLQKAESCLQEQGHIFAAFVKMFDRINQP----PPVPV*PTKNKQPGPSSSSGRRQVMPYTSTYALLATVPEHPGS---AHYSSVPR 337
            LERA  YMD+DQLVYMRGL+  H+ KPM+R+QLL++AESCLQEQ  IF AFVK+FDRIN P     PVP+  +  K+P P + +  R V+  TS    +    +H  S   A YSS  R
Sbjct:  841 LERANAYMDQDQLVYMRGLLVTHIHKPMTRAQLLERAESCLQEQPEIFMAFVKVFDRINHPYTDPHPVPLY-SGTKRPTPDTPAEPRSVL-RTSFSGRVPPTDDHVDSRARASYSSYAR 957
[Close]
BLAST of mRNA_F-serratus_M_contig919.20581.1 vs. uniprot
Match: D7G9E3_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E3_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.110e-19
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 2 
Query:    2 LERAKLYMDKDQLVYMRGLIFLHVKKPMSRSQLLQKAESCLQEQGHIFAAFVKMFDRIN----QPPPVPV*PTKN--KQPGPSSSSGRRQVMPYTSTYALLATVPEHPGSAHYSSVPRSFRGEP 355
            LERA+ Y+D+DQLVYMRGLI  HV+KPM+R+QLL++AESCL EQ  +FAAFVK FDR++    + PPVP  P     +   P S S R ++  +     +    P  P S   ++VPR +   P
Sbjct:  861 LERAQAYLDQDQLVYMRGLILRHVEKPMTRAQLLERAESCLAEQRQVFAAFVKTFDRVDLIHAEAPPVPFYPAMKTARDDPPESVSYRGRMHAHADDGGVQ---PPFPYSRVPAAVPREYAVPP 981
[Close]
BLAST of mRNA_F-serratus_M_contig919.20581.1 vs. uniprot
Match: A0A6H5JX23_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX23_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.860e-19
Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = 2 
Query:    2 LERAKLYMDKDQLVYMRGLIFLHVKKPMSRSQLLQKAESCLQEQGHIFAAFVKMFDRIN----QPPPVPV*PTKN--KQPGPSSSSGRRQVMPYTSTYALLATVPEHPGSAHYSSVPRSF 343
            LE+A+ Y+D+DQLVYMRGLI  HV+KPM+R+QLL++AESCL EQ  +FAAFVK FDR++    + PPVP  P     +   P S S R ++  +          P  P S   ++VPR +
Sbjct: 1066 LEKAQAYLDQDQLVYMRGLILRHVQKPMTRAQLLERAESCLAEQPQVFAAFVKTFDRVDLIHAEAPPVPFYPAMKTARDDPPESVSYRGRIHSHADDGGAR---PPFPYSRVPAAVPREY 1182
[Close]
BLAST of mRNA_F-serratus_M_contig919.20581.1 vs. uniprot
Match: A0A6H5K0T4_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T4_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.560e-17
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 2 
Query:    2 LERAKLYMDKDQLVYMRGLIFLHVKKPMSRSQLLQKAESCLQEQGHIFAAFVKMFDRINQPPPVPV*PTKNKQP 223
            LERA  YMD DQL YM+ LI  H+++PMSR QLL++ +SCL EQ HI+ AFVKMFD ++Q P +P+ P   + P
Sbjct:  971 LERAHAYMDPDQLSYMKSLILAHLRRPMSRDQLLKRVKSCLHEQQHIYTAFVKMFDHVDQTPLMPLFPATRRTP 1044
[Close]
BLAST of mRNA_F-serratus_M_contig919.20581.1 vs. uniprot
Match: A0A6H5JLS8_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS8_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 3.470e-14
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 2 
Query:    2 LERAKLYMDKDQLVYMRGLIFLHVKKPMSRSQLLQKAESCLQEQGHIFAAFVKMFDRIN 178
            LE A  ++DKDQL YM+GLI  HV+KPM+R QLL++A+SCLQ Q  IF AFVK FDRI+
Sbjct: 1031 LEMAHAFIDKDQLRYMKGLITTHVRKPMTRDQLLERADSCLQGQPEIFVAFVKTFDRIS 1089
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig919.20581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KVI2_9PHAE8.030e-2252.17ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LCW0_ECTSI3.700e-2151.26ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G9E3_ECTSI1.110e-1945.97ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JX23_9PHAE3.860e-1945.83BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K0T4_9PHAE1.560e-1755.41BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JLS8_9PHAE3.470e-1464.41ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig919contigF-serratus_M_contig919:42168..43431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons4
Model size517
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig919.20581.1prot_F-serratus_M_contig919.20581.1Fucus serratus malepolypeptideF-serratus_M_contig919 42190..43116 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932661.129363-UTR-F-serratus_M_contig919:42167..421891622932661.129363-UTR-F-serratus_M_contig919:42167..42189Fucus serratus maleUTRF-serratus_M_contig919 42168..42189 +
1690964409.6654477-UTR-F-serratus_M_contig919:42167..421891690964409.6654477-UTR-F-serratus_M_contig919:42167..42189Fucus serratus maleUTRF-serratus_M_contig919 42168..42189 +
1622932661.2543955-UTR-F-serratus_M_contig919:43116..434311622932661.2543955-UTR-F-serratus_M_contig919:43116..43431Fucus serratus maleUTRF-serratus_M_contig919 43117..43431 +
1690964409.7273066-UTR-F-serratus_M_contig919:43116..434311690964409.7273066-UTR-F-serratus_M_contig919:43116..43431Fucus serratus maleUTRF-serratus_M_contig919 43117..43431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932661.1473722-CDS-F-serratus_M_contig919:42189..421981622932661.1473722-CDS-F-serratus_M_contig919:42189..42198Fucus serratus maleCDSF-serratus_M_contig919 42190..42198 +
1690964409.676579-CDS-F-serratus_M_contig919:42189..421981690964409.676579-CDS-F-serratus_M_contig919:42189..42198Fucus serratus maleCDSF-serratus_M_contig919 42190..42198 +
1622932661.1615112-CDS-F-serratus_M_contig919:42387..424531622932661.1615112-CDS-F-serratus_M_contig919:42387..42453Fucus serratus maleCDSF-serratus_M_contig919 42388..42453 +
1690964409.6867208-CDS-F-serratus_M_contig919:42387..424531690964409.6867208-CDS-F-serratus_M_contig919:42387..42453Fucus serratus maleCDSF-serratus_M_contig919 42388..42453 +
1622932661.1880007-CDS-F-serratus_M_contig919:42856..429181622932661.1880007-CDS-F-serratus_M_contig919:42856..42918Fucus serratus maleCDSF-serratus_M_contig919 42857..42918 +
1690964409.7022307-CDS-F-serratus_M_contig919:42856..429181690964409.7022307-CDS-F-serratus_M_contig919:42856..42918Fucus serratus maleCDSF-serratus_M_contig919 42857..42918 +
1622932661.2360451-CDS-F-serratus_M_contig919:43073..431161622932661.2360451-CDS-F-serratus_M_contig919:43073..43116Fucus serratus maleCDSF-serratus_M_contig919 43074..43116 +
1690964409.7145782-CDS-F-serratus_M_contig919:43073..431161690964409.7145782-CDS-F-serratus_M_contig919:43073..43116Fucus serratus maleCDSF-serratus_M_contig919 43074..43116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig919.20581.1

>prot_F-serratus_M_contig919.20581.1 ID=prot_F-serratus_M_contig919.20581.1|Name=mRNA_F-serratus_M_contig919.20581.1|organism=Fucus serratus male|type=polypeptide|length=60bp
MDKDQLVYMRGLIFLHVKKPMSRSQLLQKAESCLQEQGHIFAAFVKMFDR
INQPPPVPV*
back to top

mRNA from alignment at F-serratus_M_contig919:42168..43431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig919.20581.1 ID=mRNA_F-serratus_M_contig919.20581.1|Name=mRNA_F-serratus_M_contig919.20581.1|organism=Fucus serratus male|type=mRNA|length=1264bp|location=Sequence derived from alignment at F-serratus_M_contig919:42168..43431+ (Fucus serratus male)
ATTGGAAAGGGCAAAGTTGTATATGGATAAGGTGATTATTGCACTGGGCG
CCTTTACGCTCAATAAGAAGCTGTCGTTATGACAAATCAAGCACATCTGG
TCCCGAACATTATATGCAAAACCGTGAAGATGCTAGGGACCACCTGAACT
CATTCCACTCAGAGTTCCTATGTTCGACTGATCTTTCGGTTACCGGTGAT
CGTCGCCCACAACACGACAGGATCAGCTCGTTTATATGAGGGGGCTCATC
TTTCTACACGTCAAGAAGCCAATGAGCAGGAGCCAGGTAACTTTAACTGC
GCTCTAAGAAGTCGATTGTCGGTTCCTCTAACGGCAAATATTTTGCGAGA
GTACTGAGCATCACTATGCTACTTCCCAATCATTTTCCACGACGTCCTGT
TCTTCCATTCGACTTTACCCTCCCGTGCTATTTTTAGTAGCTATAGGCAT
CTAAAGAGGAGCTACAAGAGGGGTCGCCAGTCAAAATCCCGGATTGTAAT
TGGTCGGGGCTACTGCTTGTCGCGTCTATGTCGTCCATCCAATCGTTGTG
ACTAAGTTATAAGTGCTGTTACAGTGAGCGTTTAACTCGCCGTTATAGTT
GTGTTATATTCAAACGGATTCGGTTCCCACCACGTCGTCTGTTACATCTT
TACGTCATGGATGTTTGTGCCTATGACTCGCTACAACAGCTACTTCAAAA
GGCCGAGAGCTGCCTACAAGAGCAAGGTCACATCTTCGCCGCCTTCGTCA
AGTAAGCTAGATCTGTCTTGTGTGGGGTGTGATGTGTCCTGTCAGATCCT
GGTCTAAAAGGGTAATCGCCTACAGATACTTGTATTCGGTGTCATCCGTC
GTCGTAGTTCTAACCTCCATTCTCACCACCTCGGCCAACAATGACAATAA
CTGCAGGATGTTCGACCGGATCAATCAACCTCCTCCTGTGCCCGTATAAC
CGACGAAGAACAAGCAACCTGGCCCGAGCTCCAGCTCTGGTCGAAGACAA
GTGATGCCGTATACCTCAACTTACGCCCTCCTTGCTACCGTTCCTGAACA
CCCTGGATCAGCCCATTATTCGTCCGTACCTCGCAGCTTTCGGGGAGAGC
CGGAAGAACATTAGACGGCACCCCCCAGCGACGTCAGCGTTTGCAGTGCA
GACGCCAATCGAAGCCCTCGTGGCCGTACATTTTCATATCCACACCCCAC
CAACGGTATGCCGAGGGGCGGTTGGTACTCACCCCGCCTCGGGGGTAGCG
GCGACGGTTTAGCA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig919:42168..43431+

>mRNA_F-serratus_M_contig919.20581.1 ID=mRNA_F-serratus_M_contig919.20581.1|Name=mRNA_F-serratus_M_contig919.20581.1|organism=Fucus serratus male|type=CDS|length=360bp|location=Sequence derived from alignment at F-serratus_M_contig919:42168..43431+ (Fucus serratus male)
ATGGATAAGATGGATAAGGATCAGCTCGTTTATATGAGGGGGCTCATCTT
TCTACACGTCAAGAAGCCAATGAGCAGGAGCCAGGATCAGCTCGTTTATA
TGAGGGGGCTCATCTTTCTACACGTCAAGAAGCCAATGAGCAGGAGCCAG
CTACTTCAAAAGGCCGAGAGCTGCCTACAAGAGCAAGGTCACATCTTCGC
CGCCTTCGTCAACTACTTCAAAAGGCCGAGAGCTGCCTACAAGAGCAAGG
TCACATCTTCGCCGCCTTCGTCAAGATGTTCGACCGGATCAATCAACCTC
CTCCTGTGCCCGTATAAGATGTTCGACCGGATCAATCAACCTCCTCCTGT
GCCCGTATAA
back to top