mRNA_F-serratus_M_contig918.20580.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig918.20580.1 vs. uniprot
Match: D7G7B6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7B6_ECTSI) HSP 1 Score: 104 bits (260), Expect = 1.480e-23 Identity = 97/111 (87.39%), Postives = 104/111 (93.69%), Query Frame = 2
Query: 260 MLLVLGGKASPSKKDVTTALSAVGMDADEERIDQLIADLEGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFXXXXAGGGDY 592
MLLVLGG ASP+K+DVTTAL+AVG++ DE R+DQLIAD+ GKDI ALIEAGKGKLASFG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFXXXX GGGDY
Sbjct: 1 MLLVLGGNASPTKEDVTTALAAVGIECDEARLDQLIADMAGKDIAALIEAGKGKLASFG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFXXXXEGGGDY 110
BLAST of mRNA_F-serratus_M_contig918.20580.1 vs. uniprot
Match: A0A835ZFT3_9STRA (60s acidic ribosomal protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT3_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.220e-22 Identity = 90/118 (76.27%), Postives = 102/118 (86.44%), Query Frame = 2
Query: 239 MRHLATYMLLVLGGKASPSKKDVTTALSAVGMDADEERIDQLIADLEGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFXXXXAGGGDY 592
MRHLA YM+LVLGG ASPS +DVT ALS+VG++ADE R+ QLIA++EGKD+N ++EAGK KLAS G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+DMGGGMDMF GGDY
Sbjct: 1 MRHLAVYMMLVLGGNASPSAEDVTKALSSVGIEADEARLSQLIAEMEGKDLNEVMEAGKKKLASLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGE--GGDY 116
BLAST of mRNA_F-serratus_M_contig918.20580.1 vs. uniprot
Match: B7GA61_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GA61_PHATC) HSP 1 Score: 91.7 bits (226), Expect = 9.500e-19 Identity = 80/118 (67.80%), Postives = 97/118 (82.20%), Query Frame = 2
Query: 239 MRHLATYMLLVLGGKASPSKKDVTTALSAVGMDADEERIDQLIADLEGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFXXXXAGGGDY 592
M+HLA Y+LL LGG ASP+K D+T ALSAVG++ D +D+++ADLEG+D+ AL+E+G LA+FG XXXXXXXXXXXXXXXXXXXXXXXXXXXXX+D+GGGMDMF GGGDY
Sbjct: 1 MKHLAAYLLLQLGGNASPTKDDITQALSAVGVEVDGADLDRMLADLEGQDLEALLESGNALLATFG---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDLGGGMDMFGAEEGGGGDY 115
BLAST of mRNA_F-serratus_M_contig918.20580.1 vs. uniprot
Match: A0A7R9ZND5_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZND5_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.380e-18 Identity = 79/118 (66.95%), Postives = 97/118 (82.20%), Query Frame = 2
Query: 239 MRHLATYMLLVLGGKASPSKKDVTTALSAVGMDADEERIDQLIADLEGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFXXXXAGGGDY 592
M+H+A Y+L VLGGK +P+K D++ A+S VG++AD+ +D L+ LEGKD+N L+E+GKG LA GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +D+GGGMDMF GGGDY
Sbjct: 1 MKHMAVYLLCVLGGKENPTKDDISKAMSTVGLEADDASVDALLTALEGKDLNELLESGKGLLAKIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMDLGGGMDMFGGD-EGGGDY 117
BLAST of mRNA_F-serratus_M_contig918.20580.1 vs. uniprot
Match: A0A7S1BJ38_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BJ38_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.750e-18 Identity = 84/114 (73.68%), Postives = 93/114 (81.58%), Query Frame = 2
Query: 239 MRHLATYMLLVLGGKASPSKKDVTTALSAVGMDADEERIDQLIADLEGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFXXXXAG 580
M+HLA Y+L VLGG SPS DVTTALSAVG++AD ER+ L+ DLEGKD+N L+ +GKG LA FG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DMGGGMDMF AG
Sbjct: 1 MKHLAAYLLCVLGGNESPSVSDVTTALSAVGVEADSERLATLVKDLEGKDLNELLTSGKGLLAKFG--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADMGGGMDMFGGDEAG 112
BLAST of mRNA_F-serratus_M_contig918.20580.1 vs. uniprot
Match: A0A7S2RFX2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RFX2_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 3.490e-18 Identity = 81/119 (68.07%), Postives = 99/119 (83.19%), Query Frame = 2
Query: 239 MRHLATYMLLVLGGKASPSKKDVTTALSAVGMDADEERIDQLIADLEGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFXXXXAG-GGDY 592
M+H+A Y+LLVLGG ASPS DVT +L++VG++ D+E +D+LI++L+GKD+N ++E+GK LA FG XXXXXXXXXXXXXXXXXXXXXXXXXXXXX DMGGGMDMF AG GGDY
Sbjct: 1 MKHVAAYLLLVLGGNASPSADDVTKSLASVGVEVDKESLDKLISELDGKDVNEIMESGKDMLAKFG---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXADMGGGMDMFGGDEAGDGGDY 116
BLAST of mRNA_F-serratus_M_contig918.20580.1 vs. uniprot
Match: A0A7S2H9R1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H9R1_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.030e-16 Identity = 78/116 (67.24%), Postives = 94/116 (81.03%), Query Frame = 2
Query: 239 MRHLATYMLLVLGGKASPSKKDVTTALSAVGMDADEERIDQLIADLEGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFXXXXAGGG 586
M+HLA Y+LL L G SPS DV+ ALS+VG++AD E +D+LI++++GKDIN ++E+G KLA FG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+GGGMDMF G G
Sbjct: 1 MKHLAVYLLLKLSGNESPSADDVSKALSSVGIEADSESLDKLISEMDGKDINEVLESGNAKLAKFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADIGGGMDMFGGDEGGDG 116
BLAST of mRNA_F-serratus_M_contig918.20580.1 vs. uniprot
Match: A0A4D9D2N6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2N6_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.030e-16 Identity = 85/120 (70.83%), Postives = 95/120 (79.17%), Query Frame = 2
Query: 239 MRHLATYMLLVLGGKASPSKKDVTTALSAVGMDADEERIDQLIADLEGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXI---DMGGGMDMFXXXXAGGGD 589
MRHLATY+LL LGG +PS DVTTALS+VG++ADE R+ L+ DLEGKD+ LIE G LA+FGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+GG MDMF GGGD
Sbjct: 1 MRHLATYLLLKLGGNENPSASDVTTALSSVGVEADEGRLSTLLKDLEGKDVETLIEEGSKLLATFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADLGGAMDMF-----GGGD 115
BLAST of mRNA_F-serratus_M_contig918.20580.1 vs. uniprot
Match: A0A2D4BM79_PYTIN (Ribosomal protein putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BM79_PYTIN) HSP 1 Score: 83.2 bits (204), Expect = 4.830e-16 Identity = 49/118 (41.53%), Postives = 65/118 (55.08%), Query Frame = 2
Query: 239 MRHLATYMLLVLGGKASPSKKDVTTALSAVGMDADEERIDQLIADLEGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFXXXXAGGGDY 592
MR++A Y+L +LGG A+PS DVT LS+VG++ D ER++Q+I++LEGKD+N +I AG KLA FG D+GGGMDMF GG DY
Sbjct: 3 MRYIAAYLLAILGGNAAPSAADVTAILSSVGVEVDAERLNQVISELEGKDVNEIIAAGSKKLAKFG----------------------------EEEEADLGGGMDMF----GGGSDY 88
BLAST of mRNA_F-serratus_M_contig918.20580.1 vs. uniprot
Match: A0A8K1FF81_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FF81_PYTOL) HSP 1 Score: 84.0 bits (206), Expect = 5.110e-16 Identity = 80/118 (67.80%), Postives = 95/118 (80.51%), Query Frame = 2
Query: 239 MRHLATYMLLVLGGKASPSKKDVTTALSAVGMDADEERIDQLIADLEGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFXXXXAGGGDY 592
MR++A Y+L VLGG A+PS DVT LS+VG++ D ER++++I++LEGKDIN +I AG KLA FGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+GGGMDMF GG DY
Sbjct: 1 MRYIAAYLLAVLGGNAAPSADDVTQILSSVGVEVDAERLNKVISELEGKDINEVIAAGSKKLAKFGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--DLGGGMDMFG---GGGSDY 113 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig918.20580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig918.20580.1 >prot_F-serratus_M_contig918.20580.1 ID=prot_F-serratus_M_contig918.20580.1|Name=mRNA_F-serratus_M_contig918.20580.1|organism=Fucus serratus male|type=polypeptide|length=119bp MRHLATYMLLVLGGKASPSKKDVTTALSAVGMDADEERIDQLIADLEGKDback to top mRNA from alignment at F-serratus_M_contig918:337532..340947+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig918.20580.1 ID=mRNA_F-serratus_M_contig918.20580.1|Name=mRNA_F-serratus_M_contig918.20580.1|organism=Fucus serratus male|type=mRNA|length=3416bp|location=Sequence derived from alignment at F-serratus_M_contig918:337532..340947+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig918:337532..340947+ >mRNA_F-serratus_M_contig918.20580.1 ID=mRNA_F-serratus_M_contig918.20580.1|Name=mRNA_F-serratus_M_contig918.20580.1|organism=Fucus serratus male|type=CDS|length=714bp|location=Sequence derived from alignment at F-serratus_M_contig918:337532..340947+ (Fucus serratus male)back to top |